Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18280

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
4,119,873	-		HER17_RS18275	0.85	-1.4
4,119,947	+		HER17_RS18275	0.87	-0.0
4,119,948	-		HER17_RS18275	0.87	+0.9
4,119,976	-		HER17_RS18275	0.87	-1.2
4,120,201	+				-0.8
4,120,202	-				+1.5
4,120,326	+				+0.1
4,120,374	-				-0.1
4,120,392	+				-0.7
4,120,392	+				-1.7
4,120,392	+				-2.1
4,120,419	+				-0.4
4,120,511	+				+2.3
4,120,511	+				+1.7
4,120,512	-				-1.4
4,120,544	-				+0.9
4,120,570	+				+0.4
4,120,571	-				-2.4
4,120,660	+				-0.7
4,120,660	+				-0.9
4,120,660	+				+0.6
4,120,693	-				+0.1
4,120,693	-				+0.9
4,120,719	+				-0.7
4,120,719	+				-0.7
4,120,884	+				+0.1
4,120,884	+				-0.4
4,120,956	-				+0.3
4,120,967	+				+0.7
4,120,967	+				+0.3
4,121,137	+				+1.0
4,121,138	-				-0.3
4,121,171	+		HER17_RS18280	0.10	+1.2
4,121,172	-		HER17_RS18280	0.10	-1.0
4,121,237	+		HER17_RS18280	0.12	+1.0
4,121,238	-		HER17_RS18280	0.12	+0.2
4,121,238	-		HER17_RS18280	0.12	+0.4
4,121,238	-		HER17_RS18280	0.12	+0.7
4,121,246	-		HER17_RS18280	0.12	+1.5
4,121,265	-		HER17_RS18280	0.13	+1.0
4,121,265	-		HER17_RS18280	0.13	+0.7
4,121,270	+		HER17_RS18280	0.13	+0.9
4,121,270	+		HER17_RS18280	0.13	-1.2
4,121,270	+		HER17_RS18280	0.13	+0.5
4,121,270	+		HER17_RS18280	0.13	+0.6
4,121,299	+		HER17_RS18280	0.13	+0.3
4,121,299	+		HER17_RS18280	0.13	+0.3
4,121,300	-		HER17_RS18280	0.13	+1.8
4,121,300	-		HER17_RS18280	0.13	-0.6
4,121,300	-		HER17_RS18280	0.13	-0.7
4,121,300	-		HER17_RS18280	0.13	-2.4
4,121,379	+		HER17_RS18280	0.15	+3.2
4,121,411	+		HER17_RS18280	0.16	-1.7
4,121,412	-		HER17_RS18280	0.16	+0.7
4,121,436	-		HER17_RS18280	0.17	-1.8
4,121,436	-		HER17_RS18280	0.17	+0.5
4,121,436	-		HER17_RS18280	0.17	-0.5
4,121,437	+		HER17_RS18280	0.17	+0.6
4,121,437	+		HER17_RS18280	0.17	-1.2
4,121,438	-		HER17_RS18280	0.17	+0.1
4,121,522	+		HER17_RS18280	0.19	+0.2
4,121,598	+		HER17_RS18280	0.21	-3.6
4,121,654	+		HER17_RS18280	0.22	-1.1
4,121,655	-		HER17_RS18280	0.22	+1.2
4,121,655	-		HER17_RS18280	0.22	+0.9
4,121,671	+		HER17_RS18280	0.23	-0.1
4,121,675	+		HER17_RS18280	0.23	-2.4
4,121,676	-		HER17_RS18280	0.23	+0.3
4,121,755	-		HER17_RS18280	0.25	-0.8
4,121,775	+		HER17_RS18280	0.25	+0.6
4,121,794	+		HER17_RS18280	0.26	-1.1
4,121,794	+		HER17_RS18280	0.26	+0.8
4,121,795	-		HER17_RS18280	0.26	-2.5
4,121,856	-		HER17_RS18280	0.27	+0.1
4,121,876	+		HER17_RS18280	0.28	+0.6
4,121,876	+		HER17_RS18280	0.28	+0.9
4,121,877	-		HER17_RS18280	0.28	-0.1
4,121,879	-		HER17_RS18280	0.28	+0.3
4,121,893	+		HER17_RS18280	0.28	+0.5
4,121,893	+		HER17_RS18280	0.28	-0.7
4,121,894	-		HER17_RS18280	0.28	+0.6
4,121,894	-		HER17_RS18280	0.28	+0.1
4,121,894	-		HER17_RS18280	0.28	+0.2
4,121,894	-		HER17_RS18280	0.28	-0.2
4,121,894	-		HER17_RS18280	0.28	-0.2
4,121,894	-		HER17_RS18280	0.28	-0.2
4,121,897	+		HER17_RS18280	0.28	+0.6
4,121,897	+		HER17_RS18280	0.28	-0.1
4,121,897	+		HER17_RS18280	0.28	+0.9
4,121,897	+		HER17_RS18280	0.28	-0.1
4,121,897	+		HER17_RS18280	0.28	-2.8
4,121,898	-		HER17_RS18280	0.28	-1.4
4,121,898	-		HER17_RS18280	0.28	-0.1
4,121,898	-		HER17_RS18280	0.28	+0.5
4,121,898	-		HER17_RS18280	0.28	-0.3
4,121,898	-		HER17_RS18280	0.28	+0.6
4,121,906	-		HER17_RS18280	0.28	+0.6
4,121,945	+		HER17_RS18280	0.29	+0.3
4,121,945	+		HER17_RS18280	0.29	+0.5
4,121,990	+		HER17_RS18280	0.30	-0.3
4,121,991	-		HER17_RS18280	0.30	+1.1
4,121,991	-		HER17_RS18280	0.30	-0.8
4,121,993	-		HER17_RS18280	0.30	-2.5
4,122,011	+		HER17_RS18280	0.31	-2.6
4,122,011	+		HER17_RS18280	0.31	+0.7
4,122,012	-		HER17_RS18280	0.31	-1.2
4,122,039	+		HER17_RS18280	0.32	+0.2
4,122,040	-		HER17_RS18280	0.32	-0.0
4,122,045	+		HER17_RS18280	0.32	-1.4
4,122,045	+		HER17_RS18280	0.32	-0.6
4,122,045	+		HER17_RS18280	0.32	+0.3
4,122,089	+		HER17_RS18280	0.33	-1.0
4,122,090	-		HER17_RS18280	0.33	-0.4
4,122,090	-		HER17_RS18280	0.33	-0.7
4,122,090	-		HER17_RS18280	0.33	-0.9
4,122,090	-		HER17_RS18280	0.33	-1.4
4,122,090	-		HER17_RS18280	0.33	+0.0
4,122,090	-		HER17_RS18280	0.33	+0.1
4,122,102	+		HER17_RS18280	0.33	-0.0
4,122,103	-		HER17_RS18280	0.33	+0.8
4,122,350	+		HER17_RS18280	0.39	-1.0
4,122,350	+		HER17_RS18280	0.39	-1.5
4,122,350	+		HER17_RS18280	0.39	+1.0
4,122,350	+		HER17_RS18280	0.39	+1.4
4,122,351	-		HER17_RS18280	0.39	+0.1
4,122,351	-		HER17_RS18280	0.39	+0.7
4,122,452	+		HER17_RS18280	0.42	-0.4
4,122,453	-		HER17_RS18280	0.42	+1.1
4,122,453	-		HER17_RS18280	0.42	+1.5
4,122,453	-		HER17_RS18280	0.42	-0.7
4,122,455	+		HER17_RS18280	0.42	+0.5
4,122,455	+		HER17_RS18280	0.42	+0.7
4,122,455	+		HER17_RS18280	0.42	+1.1
4,122,455	+		HER17_RS18280	0.42	+0.9
4,122,455	+		HER17_RS18280	0.42	-0.5
4,122,455	+		HER17_RS18280	0.42	-1.0
4,122,456	-		HER17_RS18280	0.42	-1.2
4,122,456	-		HER17_RS18280	0.42	-0.1
4,122,481	-		HER17_RS18280	0.42	+0.7
4,122,497	+		HER17_RS18280	0.43	+0.5
4,122,497	+		HER17_RS18280	0.43	+1.2
4,122,497	+		HER17_RS18280	0.43	+1.8
4,122,497	+		HER17_RS18280	0.43	+0.6
4,122,497	+		HER17_RS18280	0.43	+0.5
4,122,497	+		HER17_RS18280	0.43	-0.5
4,122,497	+		HER17_RS18280	0.43	-0.4
4,122,498	-		HER17_RS18280	0.43	+1.1
4,122,498	-		HER17_RS18280	0.43	+0.0
4,122,498	-		HER17_RS18280	0.43	+0.7
4,122,498	-		HER17_RS18280	0.43	+0.3
4,122,498	-		HER17_RS18280	0.43	-2.7
4,122,498	-		HER17_RS18280	0.43	+0.3
4,122,498	-		HER17_RS18280	0.43	+0.2
4,122,498	-		HER17_RS18280	0.43	-1.2
4,122,498	-		HER17_RS18280	0.43	+0.5
4,122,498	-		HER17_RS18280	0.43	+0.3
4,122,566	+		HER17_RS18280	0.45	-0.5
4,122,567	-		HER17_RS18280	0.45	+0.1
4,122,615	-		HER17_RS18280	0.46	-1.0
4,122,615	-		HER17_RS18280	0.46	-2.4
4,122,618	+		HER17_RS18280	0.46	+0.8
4,122,619	-		HER17_RS18280	0.46	-0.3
4,122,634	+		HER17_RS18280	0.46	+1.8
4,122,635	-		HER17_RS18280	0.46	+0.5
4,122,686	+		HER17_RS18280	0.47	-0.8
4,122,687	-		HER17_RS18280	0.48	-0.3
4,122,687	-		HER17_RS18280	0.48	+1.3
4,122,695	+		HER17_RS18280	0.48	+1.8
4,122,695	+		HER17_RS18280	0.48	-0.6
4,122,695	+		HER17_RS18280	0.48	-0.2
4,122,695	+		HER17_RS18280	0.48	-0.3
4,122,695	+		HER17_RS18280	0.48	-0.2
4,122,695	+		HER17_RS18280	0.48	+1.0
4,122,696	-		HER17_RS18280	0.48	+0.1
4,122,696	-		HER17_RS18280	0.48	+0.2
4,122,696	-		HER17_RS18280	0.48	+0.1
4,122,696	-		HER17_RS18280	0.48	-1.2
4,122,696	-		HER17_RS18280	0.48	-1.1
4,122,696	-		HER17_RS18280	0.48	-1.8
4,122,737	-		HER17_RS18280	0.49	+0.9
4,122,882	+		HER17_RS18280	0.52	-0.6
4,122,883	-		HER17_RS18280	0.52	-1.3
4,122,903	+		HER17_RS18280	0.53	+2.3
4,122,904	-		HER17_RS18280	0.53	-1.0
4,122,924	+		HER17_RS18280	0.53	+0.5
4,122,924	+		HER17_RS18280	0.53	-0.1
4,122,925	-		HER17_RS18280	0.53	-0.7
4,122,925	-		HER17_RS18280	0.53	-1.0
4,122,933	-		HER17_RS18280	0.54	-0.8
4,122,933	-		HER17_RS18280	0.54	-0.8
4,122,960	+		HER17_RS18280	0.54	+0.2
4,122,968	-		HER17_RS18280	0.54	-1.2
4,122,968	-		HER17_RS18280	0.54	+1.0
4,123,032	+		HER17_RS18280	0.56	-0.5
4,123,032	+		HER17_RS18280	0.56	+1.1
4,123,033	-		HER17_RS18280	0.56	-1.0
4,123,118	+		HER17_RS18280	0.58	+0.6
4,123,193	+		HER17_RS18280	0.60	-0.5
4,123,193	+		HER17_RS18280	0.60	+0.7
4,123,193	+		HER17_RS18280	0.60	+0.2
4,123,194	-		HER17_RS18280	0.60	+0.8
4,123,197	+		HER17_RS18280	0.60	-0.4
4,123,197	+		HER17_RS18280	0.60	-3.0
4,123,198	-		HER17_RS18280	0.60	-0.8
4,123,236	+		HER17_RS18280	0.61	+0.3
4,123,247	+		HER17_RS18280	0.61	+0.3
4,123,317	-		HER17_RS18280	0.63	-0.2
4,123,317	-		HER17_RS18280	0.63	+0.1
4,123,317	-		HER17_RS18280	0.63	-1.2
4,123,352	-		HER17_RS18280	0.64	+0.3
4,123,506	+		HER17_RS18280	0.68	-1.0
4,123,506	+		HER17_RS18280	0.68	-0.7
4,123,507	-		HER17_RS18280	0.68	+0.8
4,123,507	-		HER17_RS18280	0.68	-0.7
4,123,519	+		HER17_RS18280	0.68	-0.9
4,123,520	-		HER17_RS18280	0.68	-0.5
4,123,541	-		HER17_RS18280	0.68	-0.9
4,123,584	-		HER17_RS18280	0.70	-0.7
4,123,620	+		HER17_RS18280	0.70	-0.7
4,123,652	+		HER17_RS18280	0.71	+0.2
4,123,652	+		HER17_RS18280	0.71	+0.5
4,123,653	-		HER17_RS18280	0.71	+0.3
4,123,653	-		HER17_RS18280	0.71	-1.4
4,123,653	-		HER17_RS18280	0.71	+0.6
4,123,653	-		HER17_RS18280	0.71	+0.2
4,123,654	+		HER17_RS18280	0.71	-0.7
4,123,654	+		HER17_RS18280	0.71	+0.5
4,123,654	+		HER17_RS18280	0.71	+0.3
4,123,654	+		HER17_RS18280	0.71	-0.1
4,123,654	+		HER17_RS18280	0.71	+0.1
4,123,654	+		HER17_RS18280	0.71	-1.9
4,123,654	+		HER17_RS18280	0.71	+0.2
4,123,655	-		HER17_RS18280	0.71	+1.7
4,123,655	-		HER17_RS18280	0.71	+1.0
4,123,655	-		HER17_RS18280	0.71	-0.5
4,123,655	-		HER17_RS18280	0.71	+1.3
4,123,655	-		HER17_RS18280	0.71	+0.6
4,123,655	-		HER17_RS18280	0.71	+1.0
4,123,680	+		HER17_RS18280	0.72	+1.5
4,123,713	+		HER17_RS18280	0.73	-0.4
4,123,714	-		HER17_RS18280	0.73	+0.4
4,123,719	-		HER17_RS18280	0.73	-0.1
4,123,884	+		HER17_RS18280	0.77	-0.7
4,123,885	-		HER17_RS18280	0.77	+0.4
4,123,885	-		HER17_RS18280	0.77	+0.7
4,124,045	-		HER17_RS18280	0.81	+1.2
4,124,093	+		HER17_RS18280	0.82	+0.0
4,124,135	+		HER17_RS18280	0.83	-0.1
4,124,135	+		HER17_RS18280	0.83	+0.8
4,124,135	+		HER17_RS18280	0.83	+0.8
4,124,135	+		HER17_RS18280	0.83	-0.9
4,124,135	+		HER17_RS18280	0.83	-0.1
4,124,135	+		HER17_RS18280	0.83	+0.5
4,124,135	+		HER17_RS18280	0.83	+2.0
4,124,136	-		HER17_RS18280	0.83	+0.3
4,124,136	-		HER17_RS18280	0.83	-0.6
4,124,136	-		HER17_RS18280	0.83	+0.3
4,124,140	+		HER17_RS18280	0.83	+0.7
4,124,174	+		HER17_RS18280	0.84	-0.7
4,124,175	-		HER17_RS18280	0.84	-0.7
4,124,175	-		HER17_RS18280	0.84	-0.5
4,124,251	-		HER17_RS18280	0.86	-0.2
4,124,253	+		HER17_RS18280	0.86	-0.0
4,124,253	+		HER17_RS18280	0.86	+1.3
4,124,278	+		HER17_RS18280	0.87	+0.8
4,124,278	+		HER17_RS18280	0.87	-0.2
4,124,278	+		HER17_RS18280	0.87	+1.6
4,124,278	+		HER17_RS18280	0.87	+0.2
4,124,279	-		HER17_RS18280	0.87	+0.0
4,124,279	-		HER17_RS18280	0.87	-1.6
4,124,279	-		HER17_RS18280	0.87	+0.5
4,124,319	+		HER17_RS18280	0.88	-1.4
4,124,334	+		HER17_RS18280	0.88	+0.8
4,124,419	+				-1.1
4,124,419	+				+0.8
4,124,419	+				-0.8
4,124,420	-				+0.7
4,124,572	+				-0.7
4,124,572	+				+1.7
4,124,593	+				+0.3
4,124,593	+				-2.4
4,124,593	+				-0.0
4,124,594	-				-0.6
4,124,597	+				-0.2
4,124,597	+				+0.9
4,124,598	-				-0.5
4,124,598	-				-1.2
4,124,598	-				-1.6
4,124,598	-				+0.4
4,124,598	-				+0.1
4,124,627	+				+0.1
4,124,649	+				-0.1
4,124,649	+				-0.0
4,124,650	-				-0.5
4,124,662	+				-0.3
4,124,663	-				-0.5
4,124,758	+				+0.9
4,124,758	+				+1.2
4,124,822	+				-0.2
4,124,866	+				+0.1
4,124,873	+				+2.0
4,124,873	+				+1.1
4,124,873	+				-0.6
4,124,873	+				+0.7
4,124,874	-				-0.2
4,124,874	-				+0.2
4,124,874	-				-1.0
4,124,969	+		HER17_RS18285	0.13	+0.0
4,124,973	+		HER17_RS18285	0.13	-1.1
4,124,973	+		HER17_RS18285	0.13	+0.1
4,124,973	+		HER17_RS18285	0.13	+1.9
4,124,974	-		HER17_RS18285	0.14	-0.2
4,125,016	+		HER17_RS18285	0.20	+1.2
4,125,031	-		HER17_RS18285	0.23	-0.9
4,125,040	+		HER17_RS18285	0.24	+0.7
4,125,070	-		HER17_RS18285	0.29	-1.3
4,125,107	+		HER17_RS18285	0.35	-0.2
4,125,107	+		HER17_RS18285	0.35	-1.9
4,125,114	+		HER17_RS18285	0.36	-0.1
4,125,114	+		HER17_RS18285	0.36	-0.2
4,125,115	-		HER17_RS18285	0.36	+0.1
4,125,121	-		HER17_RS18285	0.37	-0.7
4,125,121	-		HER17_RS18285	0.37	-0.4
4,125,187	+		HER17_RS18285	0.48	+0.3
4,125,213	+		HER17_RS18285	0.52	+0.3
4,125,239	-		HER17_RS18285	0.56	+1.4
4,125,261	-		HER17_RS18285	0.59	+0.3
4,125,272	+		HER17_RS18285	0.61	+1.1
4,125,303	+		HER17_RS18285	0.66	+0.3
4,125,303	+		HER17_RS18285	0.66	-0.3
4,125,304	-		HER17_RS18285	0.66	-0.1
4,125,304	-		HER17_RS18285	0.66	-1.0
4,125,325	+		HER17_RS18285	0.70	+1.3
4,125,326	-		HER17_RS18285	0.70	-2.9
4,125,326	-		HER17_RS18285	0.70	-1.6
4,125,326	-		HER17_RS18285	0.70	+0.8
4,125,326	-		HER17_RS18285	0.70	-0.0
4,125,348	+		HER17_RS18285	0.73	+1.0
4,125,368	+		HER17_RS18285	0.76	-0.2
4,125,368	+		HER17_RS18285	0.76	+0.4
4,125,368	+		HER17_RS18285	0.76	+0.3
4,125,368	+		HER17_RS18285	0.76	-0.2
4,125,368	+		HER17_RS18285	0.76	-1.7
4,125,369	-		HER17_RS18285	0.77	-2.0
4,125,369	-		HER17_RS18285	0.77	-1.4
4,125,369	-		HER17_RS18285	0.77	-0.4
4,125,369	-		HER17_RS18285	0.77	+2.6
4,125,369	-		HER17_RS18285	0.77	-0.7
4,125,372	+		HER17_RS18285	0.77	-1.5
4,125,372	+		HER17_RS18285	0.77	-0.2
4,125,373	-		HER17_RS18285	0.77	+0.5
4,125,437	+		HER17_RS18285	0.87	+0.1
4,125,438	-		HER17_RS18285	0.88	+0.4
4,125,438	-		HER17_RS18285	0.88	+0.8
4,125,442	+		HER17_RS18285	0.88	-0.6
4,125,529	+				+1.4
4,125,529	+				+0.2
4,125,536	+				-1.8
4,125,536	+				-3.5
4,125,537	-				+0.2
4,125,541	+				-2.0
4,125,541	+				+1.0
4,125,542	-				+0.0
4,125,550	+				-0.2
4,125,552	-				-1.8
4,125,555	+				-1.8
4,125,555	+				-0.6
4,125,556	-				-1.1
4,125,556	-				+0.8
4,125,556	-				+1.9
4,125,564	+				-0.5
4,125,565	-				+0.6
4,125,565	-				-1.5
4,125,596	+				+0.0
4,125,596	+				+1.4
4,125,668	+				-1.1
4,125,683	-		HER17_RS18290	0.11	-1.7
4,125,718	+		HER17_RS18290	0.15	+0.5
4,125,721	-		HER17_RS18290	0.15	-0.7
4,125,735	+		HER17_RS18290	0.16	+0.0
4,125,751	+		HER17_RS18290	0.18	-1.2
4,125,751	+		HER17_RS18290	0.18	+0.2
4,125,751	+		HER17_RS18290	0.18	+0.1
4,125,752	-		HER17_RS18290	0.18	-0.3
4,125,752	-		HER17_RS18290	0.18	-3.0
4,125,752	-		HER17_RS18290	0.18	-0.4
4,125,752	-		HER17_RS18290	0.18	-1.5
4,125,797	+		HER17_RS18290	0.23	+0.0
4,125,802	+		HER17_RS18290	0.23	-0.3
4,125,802	+		HER17_RS18290	0.23	-0.1
4,125,802	+		HER17_RS18290	0.23	+0.2