Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11220

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
2,500,310	-				+1.3
2,500,318	-				+0.8
2,500,353	-				-1.5
2,500,353	-				+0.2
2,500,353	-				-2.0
2,500,354	-				+0.6
2,500,415	-		HER17_RS11215	0.15	+0.4
2,500,495	+		HER17_RS11215	0.26	-0.9
2,500,512	-		HER17_RS11215	0.28	+0.1
2,500,512	-		HER17_RS11215	0.28	+0.6
2,500,513	+		HER17_RS11215	0.28	-0.0
2,500,513	+		HER17_RS11215	0.28	+0.8
2,500,513	+		HER17_RS11215	0.28	+1.2
2,500,514	-		HER17_RS11215	0.29	-0.5
2,500,514	-		HER17_RS11215	0.29	-1.3
2,500,514	-		HER17_RS11215	0.29	-1.6
2,500,514	-		HER17_RS11215	0.29	-0.5
2,500,515	+		HER17_RS11215	0.29	-1.2
2,500,516	-		HER17_RS11215	0.29	-1.1
2,500,516	-		HER17_RS11215	0.29	+0.8
2,500,547	-		HER17_RS11215	0.33	+1.0
2,500,644	+		HER17_RS11215	0.47	+1.3
2,500,647	+		HER17_RS11215	0.47	-1.1
2,500,647	+		HER17_RS11215	0.47	-1.3
2,500,647	+		HER17_RS11215	0.47	-2.7
2,500,648	-		HER17_RS11215	0.47	-0.0
2,500,875	+		HER17_RS11215	0.79	-0.1
2,500,876	-		HER17_RS11215	0.79	+0.0
2,500,890	-		HER17_RS11215	0.81	-2.1
2,500,892	+		HER17_RS11215	0.81	-2.0
2,500,892	+		HER17_RS11215	0.81	-0.9
2,500,893	-		HER17_RS11215	0.81	-1.5
2,500,893	-		HER17_RS11215	0.81	+1.9
2,500,893	-		HER17_RS11215	0.81	-0.1
2,500,968	+				-0.1
2,500,969	-				+0.7
2,500,970	+				+1.5
2,500,971	-				-1.3
2,500,971	-				-2.0
2,500,971	-				+0.6
2,500,985	-				-0.4
2,500,985	-				+0.3
2,500,985	-				-3.1
2,500,985	-				-1.8
2,501,019	+				-3.5
2,501,020	-				+0.9
2,501,020	-				-1.7
2,501,073	+				-0.4
2,501,073	+				-2.0
2,501,074	-				+0.6
2,501,097	+				+0.6
2,501,098	-				-0.8
2,501,099	+				+1.9
2,501,212	+				+0.1
2,501,213	-				+0.8
2,501,227	+				+0.1
2,501,228	-				-0.0
2,501,228	-				+0.8
2,501,232	+				+2.6
2,501,354	-				-1.1
2,501,370	-				-0.7
2,501,370	-				+0.5
2,501,428	-		HER17_RS11220	0.11	-3.5
2,501,539	+		HER17_RS11220	0.18	+1.5
2,501,582	+		HER17_RS11220	0.20	-0.8
2,501,582	+		HER17_RS11220	0.20	-1.0
2,501,726	-		HER17_RS11220	0.30	-1.8
2,501,726	-		HER17_RS11220	0.30	+0.2
2,501,756	+		HER17_RS11220	0.31	+1.6
2,501,756	+		HER17_RS11220	0.31	+0.5
2,501,756	+		HER17_RS11220	0.31	+1.0
2,501,757	-		HER17_RS11220	0.32	-0.7
2,501,757	-		HER17_RS11220	0.32	+0.4
2,501,817	+		HER17_RS11220	0.35	+1.0
2,501,818	-		HER17_RS11220	0.35	+0.7
2,501,839	+		HER17_RS11220	0.37	-0.8
2,501,840	-		HER17_RS11220	0.37	-0.8
2,501,992	+		HER17_RS11220	0.46	-2.7
2,501,992	+		HER17_RS11220	0.46	+0.2
2,501,993	-		HER17_RS11220	0.46	-1.3
2,501,993	-		HER17_RS11220	0.46	-0.8
2,502,020	-		HER17_RS11220	0.48	+0.2
2,502,078	+		HER17_RS11220	0.52	+0.8
2,502,079	-		HER17_RS11220	0.52	+0.2
2,502,116	+		HER17_RS11220	0.54	+1.6
2,502,166	-		HER17_RS11220	0.57	+2.0
2,502,172	-		HER17_RS11220	0.58	-1.1
2,502,254	-		HER17_RS11220	0.63	+0.3
2,502,405	-		HER17_RS11220	0.73	-0.7
2,502,405	-		HER17_RS11220	0.73	+0.1
2,502,446	+		HER17_RS11220	0.75	+0.2
2,502,447	-		HER17_RS11220	0.75	-1.7
2,502,503	+		HER17_RS11220	0.79	-0.3
2,502,504	-		HER17_RS11220	0.79	-0.7
2,502,643	-		HER17_RS11220	0.88	+0.3
2,502,667	+		HER17_RS11220	0.89	+0.0
2,502,680	+		HER17_RS11220	0.90	+0.1
2,502,681	-				+1.1
2,502,710	+				-0.3
2,502,710	+				+0.4
2,502,711	-				-1.3
2,502,711	-				-0.3
2,502,836	+				-0.4
2,502,837	-				-0.1
2,502,850	+				+1.0
2,502,850	+				+0.1
2,502,850	+				+0.7
2,502,852	+				+1.0
2,502,855	+				+0.9
2,502,855	+				+0.5
2,502,856	-				+0.8
2,502,933	+				+0.2
2,502,938	-				-0.2
2,502,943	+				+0.7
2,502,949	+				-0.7
2,502,993	+				+0.4
2,503,006	+				+0.9
2,503,016	+				-0.3
2,503,017	-				+0.2
2,503,026	+				-1.7
2,503,026	+				-0.1
2,503,032	+				-0.0
2,503,142	+		HER17_RS11225	0.21	-3.3
2,503,143	-		HER17_RS11225	0.21	-2.9
2,503,143	-		HER17_RS11225	0.21	-4.8
2,503,143	-		HER17_RS11225	0.21	-1.3
2,503,164	+		HER17_RS11225	0.25	-5.2
2,503,164	+		HER17_RS11225	0.25	-3.3
2,503,164	+		HER17_RS11225	0.25	-5.0
2,503,165	-		HER17_RS11225	0.25	-2.5
2,503,206	+		HER17_RS11225	0.33	-4.1
2,503,206	+		HER17_RS11225	0.33	-3.3
2,503,206	+		HER17_RS11225	0.33	-2.7
2,503,265	+		HER17_RS11225	0.44	-3.7
2,503,266	-		HER17_RS11225	0.44	-3.1
2,503,266	-		HER17_RS11225	0.44	-3.9
2,503,267	+		HER17_RS11225	0.44	-2.7
2,503,267	+		HER17_RS11225	0.44	-3.3
2,503,267	+		HER17_RS11225	0.44	-3.6
2,503,267	+		HER17_RS11225	0.44	-3.7
2,503,267	+		HER17_RS11225	0.44	-2.5
2,503,267	+		HER17_RS11225	0.44	-2.7
2,503,267	+		HER17_RS11225	0.44	-3.1
2,503,267	+		HER17_RS11225	0.44	-2.7
2,503,267	+		HER17_RS11225	0.44	-3.9
2,503,267	+		HER17_RS11225	0.44	-3.9
2,503,268	-		HER17_RS11225	0.44	-2.0
2,503,268	-		HER17_RS11225	0.44	-2.0
2,503,268	-		HER17_RS11225	0.44	-4.3
2,503,268	-		HER17_RS11225	0.44	-3.0
2,503,268	-		HER17_RS11225	0.44	-3.6
2,503,268	-		HER17_RS11225	0.44	-3.7
2,503,268	-		HER17_RS11225	0.44	-0.7
2,503,276	+		HER17_RS11225	0.46	-3.8
2,503,276	+		HER17_RS11225	0.46	-3.4
2,503,277	-		HER17_RS11225	0.46	-4.4
2,503,312	-		HER17_RS11225	0.53	-3.9
2,503,489	+		HER17_RS11225	0.86	-3.7
2,503,490	-		HER17_RS11225	0.86	-2.0
2,503,565	+				-0.9
2,503,566	-				-0.7
2,503,603	-				-0.7
2,503,628	-				-0.1
2,503,654	+				+0.1
2,503,655	-				-1.0
2,503,655	-				-0.1
2,503,655	-				-0.5
2,503,659	-		HER17_RS11230	0.11	-3.5
2,503,792	+		HER17_RS11230	0.78	-0.4