Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08030

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
1,767,098	+				+1.0
1,767,203	-				+0.8
1,767,203	-				+0.2
1,767,218	+				+0.8
1,767,218	+				-0.3
1,767,218	+				-2.5
1,767,219	-				+1.9
1,767,289	-				-0.7
1,767,297	+				-2.8
1,767,298	-				-0.1
1,767,298	-				+1.0
1,767,301	+				-0.5
1,767,302	-				-1.5
1,767,302	-				+1.0
1,767,302	-				+0.2
1,767,304	+				-0.3
1,767,304	+				-0.8
1,767,305	-				+0.0
1,767,322	+				+0.9
1,767,323	-				-1.6
1,767,382	+		HER17_RS08025	0.17	+1.6
1,767,405	+		HER17_RS08025	0.23	+0.1
1,767,406	-		HER17_RS08025	0.23	+0.4
1,767,463	+		HER17_RS08025	0.38	+1.4
1,767,463	+		HER17_RS08025	0.38	-0.5
1,767,464	-		HER17_RS08025	0.38	-1.8
1,767,464	-		HER17_RS08025	0.38	-0.2
1,767,464	-		HER17_RS08025	0.38	-0.4
1,767,472	+		HER17_RS08025	0.40	+0.6
1,767,472	+		HER17_RS08025	0.40	+0.5
1,767,475	+		HER17_RS08025	0.41	+0.9
1,767,475	+		HER17_RS08025	0.41	-1.0
1,767,475	+		HER17_RS08025	0.41	+0.3
1,767,475	+		HER17_RS08025	0.41	+0.6
1,767,476	-		HER17_RS08025	0.41	-1.7
1,767,476	-		HER17_RS08025	0.41	+0.3
1,767,499	-		HER17_RS08025	0.47	-1.0
1,767,506	+		HER17_RS08025	0.49	-0.0
1,767,506	+		HER17_RS08025	0.49	-0.8
1,767,506	+		HER17_RS08025	0.49	+0.7
1,767,529	+		HER17_RS08025	0.55	-1.3
1,767,537	+		HER17_RS08025	0.57	+1.0
1,767,538	-		HER17_RS08025	0.57	-0.5
1,767,622	+		HER17_RS08025	0.79	-2.0
1,767,660	+		HER17_RS08025	0.89	+0.3
1,767,661	-		HER17_RS08025	0.89	+0.4
1,767,665	-				+0.1
1,767,665	-				+0.5
1,767,665	-				+1.6
1,767,665	-				+0.1
1,767,665	-				+0.2
1,767,689	+				-2.9
1,767,718	+				-1.0
1,767,718	+				+1.0
1,767,719	-				-1.1
1,767,719	-				-2.0
1,767,719	-				-0.4
1,767,761	+				-0.6
1,767,761	+				+0.4
1,767,761	+				-1.7
1,767,881	+		HER17_RS21945	0.12	-0.4
1,767,882	-		HER17_RS21945	0.13	-0.6
1,767,882	-		HER17_RS21945	0.13	+0.0
1,767,900	+		HER17_RS21945	0.29	-0.7
1,767,901	-		HER17_RS21945	0.30	-1.9
1,767,933	+		HER17_RS21945	0.59	-1.3
1,767,933	+		HER17_RS21945	0.59	+0.2
1,767,933	+		HER17_RS21945	0.59	+0.0
1,767,933	+		HER17_RS21945	0.59	+1.1
1,767,933	+		HER17_RS21945	0.59	+0.1
1,767,933	+		HER17_RS21945	0.59	+0.3
1,767,933	+		HER17_RS21945	0.59	+1.0
1,767,933	+		HER17_RS21945	0.59	-3.0
1,767,934	-		HER17_RS21945	0.59	-0.1
1,767,934	-		HER17_RS21945	0.59	-1.1
1,767,934	-		HER17_RS21945	0.59	+0.9
1,767,934	-		HER17_RS21945	0.59	-0.3
1,767,934	-		HER17_RS21945	0.59	-0.7
1,767,934	-		HER17_RS21945	0.59	+0.4
1,767,993	+				-0.4
1,768,004	+				+0.4
1,768,086	+				-1.4
1,768,090	+				+0.4
1,768,118	-				+0.8
1,768,126	+		HER17_RS08030	0.11	-0.1
1,768,126	+		HER17_RS08030	0.11	+1.8
1,768,126	+		HER17_RS08030	0.11	-0.2
1,768,127	-		HER17_RS08030	0.11	-0.1
1,768,127	-		HER17_RS08030	0.11	+2.0
1,768,127	-		HER17_RS08030	0.11	-1.0
1,768,127	-		HER17_RS08030	0.11	-2.4
1,768,127	-		HER17_RS08030	0.11	+1.0
1,768,186	-		HER17_RS08030	0.22	+0.4
1,768,189	+		HER17_RS08030	0.22	+0.6
1,768,193	-		HER17_RS08030	0.23	+0.6
1,768,216	+		HER17_RS08030	0.27	+0.4
1,768,217	-		HER17_RS08030	0.27	+1.2
1,768,217	-		HER17_RS08030	0.27	+0.3
1,768,250	+		HER17_RS08030	0.34	-0.1
1,768,250	+		HER17_RS08030	0.34	-0.1
1,768,250	+		HER17_RS08030	0.34	+0.6
1,768,251	-		HER17_RS08030	0.34	-0.6
1,768,251	-		HER17_RS08030	0.34	+0.6
1,768,322	+		HER17_RS08030	0.47	+0.4
1,768,323	-		HER17_RS08030	0.47	+0.9
1,768,388	+		HER17_RS08030	0.59	-2.6
1,768,391	+		HER17_RS08030	0.59	-0.2
1,768,391	+		HER17_RS08030	0.59	+0.6
1,768,391	+		HER17_RS08030	0.59	+1.9
1,768,392	-		HER17_RS08030	0.60	-0.3
1,768,392	-		HER17_RS08030	0.60	+0.8
1,768,392	-		HER17_RS08030	0.60	+0.7
1,768,397	+		HER17_RS08030	0.60	+0.7
1,768,448	-		HER17_RS08030	0.70	+1.3
1,768,448	-		HER17_RS08030	0.70	+2.0
1,768,484	+		HER17_RS08030	0.76	-0.1
1,768,488	-		HER17_RS08030	0.77	-0.1
1,768,561	-				+0.6
1,768,599	-				+0.9
1,768,673	+				+1.8
1,768,676	+				-0.8
1,768,682	+				-0.8
1,768,686	-				+0.1
1,768,724	+				-0.1
1,768,724	+				+2.0
1,768,724	+				+1.1
1,768,725	-				-0.4
1,768,725	-				-0.2
1,768,725	-				+0.9
1,768,725	-				+0.1
1,768,725	-				-0.6
1,768,726	+				+1.5
1,768,726	+				+0.2
1,768,726	+				+0.6
1,768,727	-				-0.9
1,768,727	-				-0.8
1,768,727	-				-0.7
1,768,727	-				-0.1
1,768,727	-				-0.5
1,768,727	-				-1.6
1,768,727	-				+0.5
1,768,727	-				-0.3
1,768,727	-				-1.0
1,768,727	-				+0.6
1,768,779	+				+2.1
1,768,780	-				+0.3
1,768,928	+		HER17_RS08035	0.18	-0.5
1,768,954	+		HER17_RS08035	0.20	+0.6
1,768,954	+		HER17_RS08035	0.20	+0.2
1,768,954	+		HER17_RS08035	0.20	-0.8
1,768,955	-		HER17_RS08035	0.20	-0.3
1,768,958	+		HER17_RS08035	0.20	+0.7
1,768,958	+		HER17_RS08035	0.20	-2.2
1,769,008	+		HER17_RS08035	0.24	+0.1
1,769,008	+		HER17_RS08035	0.24	-0.1
1,769,145	+		HER17_RS08035	0.33	-2.2
1,769,292	+		HER17_RS08035	0.43	+1.1
1,769,313	+		HER17_RS08035	0.45	+0.0
1,769,314	-		HER17_RS08035	0.45	-0.9
1,769,314	-		HER17_RS08035	0.45	+0.2
1,769,314	-		HER17_RS08035	0.45	+0.7
1,769,333	-		HER17_RS08035	0.46	+0.1
1,769,333	-		HER17_RS08035	0.46	+0.4
1,769,338	+		HER17_RS08035	0.46	-0.7
1,769,339	-		HER17_RS08035	0.46	+0.4
1,769,343	+		HER17_RS08035	0.47	-2.9
1,769,344	-		HER17_RS08035	0.47	-0.1
1,769,344	-		HER17_RS08035	0.47	-0.8
1,769,402	-		HER17_RS08035	0.51	+0.0
1,769,465	+		HER17_RS08035	0.55	+1.1
1,769,465	+		HER17_RS08035	0.55	-2.6
1,769,466	-		HER17_RS08035	0.55	-0.2
1,769,466	-		HER17_RS08035	0.55	-0.0
1,769,467	+		HER17_RS08035	0.55	+0.1
1,769,550	-		HER17_RS08035	0.61	-0.8
1,769,573	-		HER17_RS08035	0.62	-1.6
1,769,596	-		HER17_RS08035	0.64	+0.1
1,769,596	-		HER17_RS08035	0.64	-1.0
1,769,596	-		HER17_RS08035	0.64	-0.3
1,769,596	-		HER17_RS08035	0.64	-1.2