Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04235

Experiment: M9+glucose+arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04230 and HER17_RS04235 are separated by 289 nucleotidesHER17_RS04235 and HER17_RS04240 overlap by 1 nucleotides HER17_RS04230: HER17_RS04230 - PilZ domain-containing protein, at 965,828 to 967,552 _RS04230 HER17_RS04235: HER17_RS04235 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 967,842 to 969,671 _RS04235 HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404 _RS04240 Position (kb) 967 968 969 970Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 966.882 kb on + strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.933 kb on + strand, within HER17_RS04230at 966.933 kb on + strand, within HER17_RS04230at 966.994 kb on + strand, within HER17_RS04230at 966.994 kb on + strand, within HER17_RS04230at 967.053 kb on + strand, within HER17_RS04230at 967.062 kb on + strand, within HER17_RS04230at 967.062 kb on + strand, within HER17_RS04230at 967.063 kb on - strand, within HER17_RS04230at 967.205 kb on - strand, within HER17_RS04230at 967.228 kb on + strand, within HER17_RS04230at 967.228 kb on + strand, within HER17_RS04230at 967.268 kb on + strand, within HER17_RS04230at 967.269 kb on - strand, within HER17_RS04230at 967.286 kb on + strand, within HER17_RS04230at 967.286 kb on + strand, within HER17_RS04230at 967.287 kb on - strand, within HER17_RS04230at 967.287 kb on - strand, within HER17_RS04230at 967.287 kb on - strand, within HER17_RS04230at 967.291 kb on + strand, within HER17_RS04230at 967.292 kb on - strand, within HER17_RS04230at 967.310 kb on + strand, within HER17_RS04230at 967.310 kb on + strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.355 kb on + strand, within HER17_RS04230at 967.387 kb on + strandat 967.393 kb on + strandat 967.448 kb on - strandat 967.453 kb on + strandat 967.664 kb on + strandat 967.694 kb on + strandat 967.695 kb on - strandat 967.711 kb on + strandat 967.711 kb on + strandat 967.711 kb on + strandat 967.711 kb on + strandat 967.714 kb on + strandat 967.731 kb on + strandat 967.738 kb on + strandat 967.778 kb on + strandat 967.778 kb on + strandat 967.779 kb on - strandat 967.796 kb on + strandat 967.797 kb on - strandat 967.847 kb on + strandat 967.848 kb on - strandat 967.895 kb on - strandat 967.956 kb on + strandat 968.047 kb on + strand, within HER17_RS04235at 968.167 kb on - strand, within HER17_RS04235at 968.337 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.865 kb on + strand, within HER17_RS04235at 968.865 kb on + strand, within HER17_RS04235at 968.866 kb on - strand, within HER17_RS04235at 968.958 kb on - strand, within HER17_RS04235at 969.033 kb on + strand, within HER17_RS04235at 969.034 kb on - strand, within HER17_RS04235at 969.039 kb on - strand, within HER17_RS04235at 969.106 kb on - strand, within HER17_RS04235at 969.106 kb on - strand, within HER17_RS04235at 969.142 kb on - strand, within HER17_RS04235at 969.201 kb on - strand, within HER17_RS04235at 969.281 kb on + strand, within HER17_RS04235at 969.281 kb on + strand, within HER17_RS04235at 969.336 kb on - strand, within HER17_RS04235at 969.347 kb on + strand, within HER17_RS04235at 969.384 kb on + strand, within HER17_RS04235at 969.385 kb on - strand, within HER17_RS04235at 969.450 kb on + strand, within HER17_RS04235at 969.451 kb on - strand, within HER17_RS04235at 969.519 kb on + strandat 969.519 kb on + strandat 969.519 kb on + strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.520 kb on - strandat 969.542 kb on + strandat 969.580 kb on + strandat 969.580 kb on + strandat 969.580 kb on + strandat 969.652 kb on - strandat 969.666 kb on + strandat 969.666 kb on + strandat 969.666 kb on + strandat 969.666 kb on + strandat 969.666 kb on + strandat 969.667 kb on - strandat 969.667 kb on - strandat 969.667 kb on - strandat 969.667 kb on - strandat 969.684 kb on - strandat 969.720 kb on + strandat 969.720 kb on + strandat 969.721 kb on - strandat 969.721 kb on - strandat 969.840 kb on + strandat 969.856 kb on + strand, within HER17_RS04240at 969.856 kb on + strand, within HER17_RS04240at 969.857 kb on - strand, within HER17_RS04240at 969.860 kb on + strand, within HER17_RS04240at 969.860 kb on + strand, within HER17_RS04240at 969.861 kb on - strand, within HER17_RS04240at 970.014 kb on - strand, within HER17_RS04240at 970.014 kb on - strand, within HER17_RS04240at 970.018 kb on + strand, within HER17_RS04240at 970.053 kb on - strand, within HER17_RS04240at 970.102 kb on + strand, within HER17_RS04240at 970.102 kb on + strand, within HER17_RS04240at 970.103 kb on - strand, within HER17_RS04240at 970.103 kb on - strand, within HER17_RS04240at 970.103 kb on - strand, within HER17_RS04240at 970.159 kb on + strand, within HER17_RS04240at 970.160 kb on - strand, within HER17_RS04240at 970.160 kb on - strand, within HER17_RS04240at 970.160 kb on - strand, within HER17_RS04240at 970.199 kb on + strand, within HER17_RS04240at 970.199 kb on + strand, within HER17_RS04240at 970.199 kb on + strand, within HER17_RS04240at 970.200 kb on - strand, within HER17_RS04240at 970.250 kb on + strand, within HER17_RS04240at 970.251 kb on - strand, within HER17_RS04240at 970.319 kb on + strand, within HER17_RS04240at 970.319 kb on + strand, within HER17_RS04240at 970.320 kb on - strand, within HER17_RS04240at 970.320 kb on - strand, within HER17_RS04240at 970.514 kb on + strand, within HER17_RS04240at 970.514 kb on + strand, within HER17_RS04240at 970.515 kb on - strand, within HER17_RS04240at 970.532 kb on - strand, within HER17_RS04240at 970.595 kb on - strand, within HER17_RS04240

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose+arginine
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966,882 + HER17_RS04230 0.61 -0.2
966,883 - HER17_RS04230 0.61 -0.1
966,883 - HER17_RS04230 0.61 +0.5
966,883 - HER17_RS04230 0.61 -0.0
966,883 - HER17_RS04230 0.61 -0.8
966,933 + HER17_RS04230 0.64 -0.9
966,933 + HER17_RS04230 0.64 -0.6
966,994 + HER17_RS04230 0.68 +0.5
966,994 + HER17_RS04230 0.68 +0.2
967,053 + HER17_RS04230 0.71 -0.3
967,062 + HER17_RS04230 0.72 -2.3
967,062 + HER17_RS04230 0.72 +0.3
967,063 - HER17_RS04230 0.72 -3.7
967,205 - HER17_RS04230 0.80 +0.5
967,228 + HER17_RS04230 0.81 +0.9
967,228 + HER17_RS04230 0.81 +0.2
967,268 + HER17_RS04230 0.83 +0.4
967,269 - HER17_RS04230 0.84 +0.7
967,286 + HER17_RS04230 0.85 +0.6
967,286 + HER17_RS04230 0.85 +0.2
967,287 - HER17_RS04230 0.85 +0.8
967,287 - HER17_RS04230 0.85 -0.2
967,287 - HER17_RS04230 0.85 +0.3
967,291 + HER17_RS04230 0.85 +0.2
967,292 - HER17_RS04230 0.85 +0.2
967,310 + HER17_RS04230 0.86 -0.2
967,310 + HER17_RS04230 0.86 -0.5
967,311 - HER17_RS04230 0.86 +0.3
967,311 - HER17_RS04230 0.86 +1.1
967,311 - HER17_RS04230 0.86 +0.7
967,311 - HER17_RS04230 0.86 +0.2
967,355 + HER17_RS04230 0.89 -0.3
967,387 + -0.8
967,393 + +0.3
967,448 - -0.1
967,453 + -0.4
967,664 + -1.5
967,694 + +0.3
967,695 - -0.4
967,711 + -0.3
967,711 + +0.0
967,711 + -2.4
967,711 + -0.4
967,714 + -0.7
967,731 + +0.3
967,738 + -0.8
967,778 + -0.8
967,778 + -0.2
967,779 - -4.7
967,796 + -0.7
967,797 - -2.2
967,847 + -3.2
967,848 - -2.4
967,895 - -2.5
967,956 + -4.2
968,047 + HER17_RS04235 0.11 -2.9
968,167 - HER17_RS04235 0.18 -3.2
968,337 + HER17_RS04235 0.27 -4.7
968,389 + HER17_RS04235 0.30 -2.1
968,389 + HER17_RS04235 0.30 -2.5
968,389 + HER17_RS04235 0.30 -2.8
968,389 + HER17_RS04235 0.30 -2.3
968,865 + HER17_RS04235 0.56 -3.1
968,865 + HER17_RS04235 0.56 -3.1
968,866 - HER17_RS04235 0.56 -1.2
968,958 - HER17_RS04235 0.61 -3.3
969,033 + HER17_RS04235 0.65 -1.7
969,034 - HER17_RS04235 0.65 -2.3
969,039 - HER17_RS04235 0.65 -2.9
969,106 - HER17_RS04235 0.69 -0.8
969,106 - HER17_RS04235 0.69 -3.3
969,142 - HER17_RS04235 0.71 -2.8
969,201 - HER17_RS04235 0.74 -2.7
969,281 + HER17_RS04235 0.79 -4.3
969,281 + HER17_RS04235 0.79 -4.0
969,336 - HER17_RS04235 0.82 -1.2
969,347 + HER17_RS04235 0.82 -3.0
969,384 + HER17_RS04235 0.84 -2.3
969,385 - HER17_RS04235 0.84 -2.6
969,450 + HER17_RS04235 0.88 -2.8
969,451 - HER17_RS04235 0.88 -2.6
969,519 + -2.4
969,519 + -0.8
969,519 + -3.1
969,520 - -3.2
969,520 - -3.4
969,520 - -3.2
969,520 - -2.8
969,520 - -1.4
969,520 - -2.8
969,520 - -3.4
969,520 - -3.9
969,520 - -3.1
969,542 + -3.0
969,580 + -2.9
969,580 + -1.2
969,580 + -3.2
969,652 - -5.1
969,666 + -2.9
969,666 + -3.9
969,666 + -1.5
969,666 + -2.9
969,666 + -3.6
969,667 - -2.8
969,667 - -2.4
969,667 - -3.1
969,667 - -4.9
969,684 - -1.0
969,720 + -4.5
969,720 + -3.6
969,721 - -2.9
969,721 - -2.6
969,840 + -1.7
969,856 + HER17_RS04240 0.11 -1.9
969,856 + HER17_RS04240 0.11 -4.0
969,857 - HER17_RS04240 0.11 -1.4
969,860 + HER17_RS04240 0.11 -3.8
969,860 + HER17_RS04240 0.11 -2.0
969,861 - HER17_RS04240 0.11 -0.6
970,014 - HER17_RS04240 0.20 -3.3
970,014 - HER17_RS04240 0.20 -2.6
970,018 + HER17_RS04240 0.20 -2.7
970,053 - HER17_RS04240 0.22 -3.9
970,102 + HER17_RS04240 0.25 -3.0
970,102 + HER17_RS04240 0.25 +0.8
970,103 - HER17_RS04240 0.25 -4.6
970,103 - HER17_RS04240 0.25 -1.4
970,103 - HER17_RS04240 0.25 -0.9
970,159 + HER17_RS04240 0.28 -1.9
970,160 - HER17_RS04240 0.28 -2.8
970,160 - HER17_RS04240 0.28 -2.9
970,160 - HER17_RS04240 0.28 -2.2
970,199 + HER17_RS04240 0.30 -3.1
970,199 + HER17_RS04240 0.30 -3.4
970,199 + HER17_RS04240 0.30 -1.1
970,200 - HER17_RS04240 0.31 -1.9
970,250 + HER17_RS04240 0.33 -1.8
970,251 - HER17_RS04240 0.33 -0.4
970,319 + HER17_RS04240 0.37 -3.2
970,319 + HER17_RS04240 0.37 -2.1
970,320 - HER17_RS04240 0.37 -3.0
970,320 - HER17_RS04240 0.37 -2.9
970,514 + HER17_RS04240 0.49 -3.5
970,514 + HER17_RS04240 0.49 -2.7
970,515 - HER17_RS04240 0.49 +0.1
970,532 - HER17_RS04240 0.50 -0.4
970,595 - HER17_RS04240 0.53 -3.6

Or see this region's nucleotide sequence