Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04020 and HER17_RS04025 are separated by 369 nucleotides HER17_RS04025 and HER17_RS04030 are separated by 264 nucleotides
HER17_RS04020: HER17_RS04020 - multifunctional CCA addition/repair protein, at 906,313 to 907,557
_RS04020
HER17_RS04025: HER17_RS04025 - SH3 domain-containing protein, at 907,927 to 908,547
_RS04025
HER17_RS04030: HER17_RS04030 - inorganic triphosphatase, at 908,812 to 910,149
_RS04030
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 907.548 kb on - strand at 907.548 kb on - strand at 907.585 kb on - strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.596 kb on + strand at 907.597 kb on - strand at 907.597 kb on - strand at 907.597 kb on - strand at 907.597 kb on - strand at 907.599 kb on + strand at 907.599 kb on + strand at 907.599 kb on + strand at 907.599 kb on + strand at 907.600 kb on - strand at 907.600 kb on - strand at 907.600 kb on - strand at 907.600 kb on - strand at 907.675 kb on - strand at 907.675 kb on - strand at 907.706 kb on - strand at 907.806 kb on + strand at 907.806 kb on + strand at 907.806 kb on + strand at 907.807 kb on - strand at 907.851 kb on - strand at 907.857 kb on + strand at 907.920 kb on - strand at 907.929 kb on - strand at 907.969 kb on - strand at 908.000 kb on - strand, within HER17_RS04025 at 908.022 kb on - strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.025 kb on + strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.026 kb on - strand, within HER17_RS04025 at 908.055 kb on + strand, within HER17_RS04025 at 908.104 kb on - strand, within HER17_RS04025 at 908.214 kb on + strand, within HER17_RS04025 at 908.215 kb on - strand, within HER17_RS04025 at 908.217 kb on + strand, within HER17_RS04025 at 908.218 kb on - strand, within HER17_RS04025 at 908.218 kb on - strand, within HER17_RS04025 at 908.218 kb on - strand, within HER17_RS04025 at 908.293 kb on - strand, within HER17_RS04025 at 908.293 kb on - strand, within HER17_RS04025 at 908.293 kb on - strand, within HER17_RS04025 at 908.349 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.445 kb on - strand, within HER17_RS04025 at 908.468 kb on + strand, within HER17_RS04025 at 908.469 kb on - strand, within HER17_RS04025 at 908.580 kb on + strand at 908.580 kb on + strand at 908.580 kb on + strand at 908.591 kb on + strand at 908.592 kb on - strand at 908.592 kb on - strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.612 kb on + strand at 908.613 kb on - strand at 908.634 kb on + strand at 908.634 kb on + strand at 908.658 kb on - strand at 908.670 kb on + strand at 908.670 kb on + strand at 908.670 kb on + strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.671 kb on - strand at 908.682 kb on + strand at 908.745 kb on + strand at 908.745 kb on + strand at 908.745 kb on + strand at 908.746 kb on - strand at 908.749 kb on - strand at 908.749 kb on - strand at 908.749 kb on - strand at 908.749 kb on - strand at 908.758 kb on + strand at 908.758 kb on + strand at 908.770 kb on + strand at 908.770 kb on + strand at 908.771 kb on - strand at 908.771 kb on - strand at 908.771 kb on - strand at 908.781 kb on + strand at 908.781 kb on + strand at 908.782 kb on - strand at 908.782 kb on - strand at 908.782 kb on - strand at 908.782 kb on - strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.811 kb on + strand at 908.838 kb on + strand at 908.839 kb on - strand at 908.839 kb on - strand at 908.899 kb on + strand at 908.908 kb on + strand at 908.908 kb on + strand at 908.909 kb on - strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.940 kb on + strand at 908.941 kb on - strand at 908.941 kb on - strand at 908.941 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.945 kb on - strand at 908.962 kb on - strand, within HER17_RS04030 at 908.966 kb on - strand, within HER17_RS04030 at 908.966 kb on - strand, within HER17_RS04030 at 908.966 kb on - strand, within HER17_RS04030 at 908.994 kb on + strand, within HER17_RS04030 at 909.076 kb on + strand, within HER17_RS04030 at 909.077 kb on - strand, within HER17_RS04030 at 909.077 kb on - strand, within HER17_RS04030 at 909.078 kb on + strand, within HER17_RS04030 at 909.078 kb on + strand, within HER17_RS04030 at 909.079 kb on - strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.219 kb on + strand, within HER17_RS04030 at 909.220 kb on - strand, within HER17_RS04030 at 909.224 kb on - strand, within HER17_RS04030 at 909.226 kb on + strand, within HER17_RS04030 at 909.251 kb on + strand, within HER17_RS04030 at 909.252 kb on - strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.315 kb on + strand, within HER17_RS04030 at 909.376 kb on - strand, within HER17_RS04030 at 909.396 kb on + strand, within HER17_RS04030 at 909.397 kb on - strand, within HER17_RS04030 at 909.397 kb on - strand, within HER17_RS04030 at 909.413 kb on - strand, within HER17_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 907,548 - +0.5 907,548 - -2.0 907,585 - -0.1 907,596 + +0.5 907,596 + -0.7 907,596 + -1.2 907,596 + -0.2 907,596 + +0.9 907,596 + -1.4 907,596 + +0.2 907,596 + +1.3 907,596 + +0.1 907,596 + +0.7 907,596 + -2.1 907,597 - +1.2 907,597 - -0.5 907,597 - -0.1 907,597 - +1.6 907,599 + -0.3 907,599 + -3.3 907,599 + -0.7 907,599 + -0.5 907,600 - -0.8 907,600 - -1.5 907,600 - +0.6 907,600 - -3.0 907,675 - -2.8 907,675 - +0.6 907,706 - -2.1 907,806 + +0.4 907,806 + -0.9 907,806 + -0.5 907,807 - +0.6 907,851 - -0.1 907,857 + +0.7 907,920 - +0.0 907,929 - +0.2 907,969 - +0.8 908,000 - HER17_RS04025 0.12 -0.2 908,022 - HER17_RS04025 0.15 -1.0 908,025 + HER17_RS04025 0.16 +2.3 908,025 + HER17_RS04025 0.16 -0.5 908,025 + HER17_RS04025 0.16 -2.7 908,025 + HER17_RS04025 0.16 -0.8 908,025 + HER17_RS04025 0.16 +0.1 908,025 + HER17_RS04025 0.16 -0.1 908,026 - HER17_RS04025 0.16 +0.2 908,026 - HER17_RS04025 0.16 -1.9 908,026 - HER17_RS04025 0.16 +0.9 908,026 - HER17_RS04025 0.16 -2.3 908,026 - HER17_RS04025 0.16 -0.3 908,055 + HER17_RS04025 0.21 +1.3 908,104 - HER17_RS04025 0.29 -0.6 908,214 + HER17_RS04025 0.46 -2.4 908,215 - HER17_RS04025 0.46 -1.3 908,217 + HER17_RS04025 0.47 +1.2 908,218 - HER17_RS04025 0.47 +0.6 908,218 - HER17_RS04025 0.47 +0.7 908,218 - HER17_RS04025 0.47 +1.6 908,293 - HER17_RS04025 0.59 +1.0 908,293 - HER17_RS04025 0.59 -2.0 908,293 - HER17_RS04025 0.59 +1.1 908,349 - HER17_RS04025 0.68 -1.3 908,445 - HER17_RS04025 0.83 -0.9 908,445 - HER17_RS04025 0.83 +0.7 908,445 - HER17_RS04025 0.83 +0.0 908,445 - HER17_RS04025 0.83 -0.0 908,445 - HER17_RS04025 0.83 -0.5 908,468 + HER17_RS04025 0.87 +0.3 908,469 - HER17_RS04025 0.87 -0.7 908,580 + +0.2 908,580 + +0.2 908,580 + -0.1 908,591 + -0.0 908,592 - +0.8 908,592 - +1.7 908,610 + -0.2 908,610 + +0.5 908,611 - +0.0 908,611 - +1.0 908,611 - -1.5 908,612 + -0.9 908,613 - -0.4 908,634 + +1.2 908,634 + +0.3 908,658 - +1.0 908,670 + +0.5 908,670 + +2.0 908,670 + +2.9 908,671 - +0.0 908,671 - +0.4 908,671 - -0.3 908,671 - -0.5 908,671 - -2.4 908,682 + +1.0 908,745 + -2.1 908,745 + +0.9 908,745 + +0.4 908,746 - +1.1 908,749 - -0.3 908,749 - +0.7 908,749 - +0.9 908,749 - -1.1 908,758 + +0.7 908,758 + -0.8 908,770 + -2.3 908,770 + -0.7 908,771 - -0.4 908,771 - +0.3 908,771 - -2.5 908,781 + +0.3 908,781 + -0.9 908,782 - +0.0 908,782 - +0.7 908,782 - +0.7 908,782 - -1.3 908,811 + +1.0 908,811 + -0.3 908,811 + +0.2 908,811 + -0.7 908,838 + -3.0 908,839 - -1.3 908,839 - -0.4 908,899 + -1.1 908,908 + -0.7 908,908 + -1.0 908,909 - -1.0 908,940 + +0.3 908,940 + -1.8 908,940 + +1.5 908,940 + -1.1 908,940 + -1.7 908,940 + -0.5 908,941 - -1.1 908,941 - -0.2 908,941 - -1.2 908,945 - -0.5 908,945 - -0.5 908,945 - -1.2 908,945 - -1.1 908,945 - -2.1 908,945 - -1.3 908,945 - -0.7 908,962 - HER17_RS04030 0.11 +0.1 908,966 - HER17_RS04030 0.12 -2.1 908,966 - HER17_RS04030 0.12 -1.5 908,966 - HER17_RS04030 0.12 -2.3 908,994 + HER17_RS04030 0.14 +0.2 909,076 + HER17_RS04030 0.20 +0.0 909,077 - HER17_RS04030 0.20 -0.7 909,077 - HER17_RS04030 0.20 -1.1 909,078 + HER17_RS04030 0.20 -0.5 909,078 + HER17_RS04030 0.20 -0.4 909,079 - HER17_RS04030 0.20 -0.3 909,219 + HER17_RS04030 0.30 -0.9 909,219 + HER17_RS04030 0.30 -1.9 909,219 + HER17_RS04030 0.30 +1.2 909,219 + HER17_RS04030 0.30 -1.1 909,220 - HER17_RS04030 0.30 -0.6 909,224 - HER17_RS04030 0.31 -1.5 909,226 + HER17_RS04030 0.31 -0.3 909,251 + HER17_RS04030 0.33 -1.7 909,252 - HER17_RS04030 0.33 -0.8 909,315 + HER17_RS04030 0.38 -1.0 909,315 + HER17_RS04030 0.38 -1.0 909,315 + HER17_RS04030 0.38 +0.3 909,315 + HER17_RS04030 0.38 -2.7 909,376 - HER17_RS04030 0.42 -1.4 909,396 + HER17_RS04030 0.44 +0.5 909,397 - HER17_RS04030 0.44 +0.6 909,397 - HER17_RS04030 0.44 -1.5 909,413 - HER17_RS04030 0.45 +0.7
Or see this region's nucleotide sequence