Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS03420

Experiment: M9+glucose+arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS03415 and HER17_RS03420 are separated by 692 nucleotidesHER17_RS03420 and HER17_RS03425 are separated by 45 nucleotidesHER17_RS03425 and HER17_RS03430 are separated by 63 nucleotides HER17_RS03415: HER17_RS03415 - choline trimethylamine-lyase, at 775,528 to 777,903 _RS03415 HER17_RS03420: HER17_RS03420 - SDR family oxidoreductase, at 778,596 to 779,285 _RS03420 HER17_RS03425: HER17_RS03425 - YhcH/YjgK/YiaL family protein, at 779,331 to 779,798 _RS03425 HER17_RS03430: HER17_RS03430 - exo-alpha-sialidase, at 779,862 to 781,049 _RS03430 Position (kb) 778 779 780Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 777.615 kb on + strand, within HER17_RS03415at 777.615 kb on + strand, within HER17_RS03415at 777.703 kb on + strandat 777.780 kb on + strandat 777.834 kb on - strandat 777.834 kb on - strandat 777.843 kb on + strandat 777.843 kb on + strandat 777.843 kb on + strandat 777.843 kb on + strandat 777.844 kb on - strandat 777.844 kb on - strandat 777.844 kb on - strandat 777.844 kb on - strandat 777.847 kb on - strandat 777.863 kb on + strandat 777.885 kb on + strandat 777.886 kb on - strandat 777.886 kb on - strandat 777.886 kb on - strandat 777.895 kb on - strandat 777.913 kb on + strandat 777.914 kb on - strandat 777.919 kb on - strandat 777.967 kb on + strandat 778.085 kb on + strandat 778.085 kb on + strandat 778.085 kb on + strandat 778.086 kb on - strandat 778.086 kb on - strandat 778.086 kb on - strandat 778.088 kb on + strandat 778.089 kb on - strandat 778.089 kb on - strandat 778.089 kb on - strandat 778.089 kb on - strandat 778.106 kb on + strandat 778.259 kb on - strandat 778.261 kb on - strandat 778.285 kb on - strandat 778.332 kb on - strandat 778.338 kb on - strandat 778.347 kb on + strandat 778.347 kb on + strandat 778.348 kb on - strandat 778.501 kb on - strandat 778.536 kb on + strandat 778.537 kb on - strandat 778.552 kb on - strandat 778.552 kb on - strandat 778.552 kb on - strandat 778.552 kb on - strandat 778.794 kb on + strand, within HER17_RS03420at 778.799 kb on + strand, within HER17_RS03420at 778.800 kb on - strand, within HER17_RS03420at 778.800 kb on - strand, within HER17_RS03420at 778.871 kb on - strand, within HER17_RS03420at 778.871 kb on - strand, within HER17_RS03420at 778.871 kb on - strand, within HER17_RS03420at 778.871 kb on - strand, within HER17_RS03420at 778.871 kb on - strand, within HER17_RS03420at 778.871 kb on - strand, within HER17_RS03420at 778.965 kb on + strand, within HER17_RS03420at 778.965 kb on + strand, within HER17_RS03420at 778.966 kb on - strand, within HER17_RS03420at 778.966 kb on - strand, within HER17_RS03420at 779.082 kb on + strand, within HER17_RS03420at 779.114 kb on + strand, within HER17_RS03420at 779.159 kb on - strand, within HER17_RS03420at 779.159 kb on - strand, within HER17_RS03420at 779.354 kb on + strandat 779.489 kb on + strand, within HER17_RS03425at 779.491 kb on + strand, within HER17_RS03425at 779.491 kb on + strand, within HER17_RS03425at 779.491 kb on + strand, within HER17_RS03425at 779.492 kb on - strand, within HER17_RS03425at 779.492 kb on - strand, within HER17_RS03425at 779.504 kb on + strand, within HER17_RS03425at 779.504 kb on + strand, within HER17_RS03425at 779.505 kb on - strand, within HER17_RS03425at 779.757 kb on + strandat 779.798 kb on + strandat 779.799 kb on - strandat 779.799 kb on - strandat 779.864 kb on - strandat 779.920 kb on + strandat 779.921 kb on - strandat 780.005 kb on + strand, within HER17_RS03430at 780.006 kb on - strand, within HER17_RS03430at 780.039 kb on - strand, within HER17_RS03430at 780.139 kb on - strand, within HER17_RS03430at 780.193 kb on + strand, within HER17_RS03430at 780.193 kb on + strand, within HER17_RS03430at 780.193 kb on + strand, within HER17_RS03430at 780.233 kb on + strand, within HER17_RS03430at 780.233 kb on + strand, within HER17_RS03430at 780.233 kb on + strand, within HER17_RS03430at 780.234 kb on - strand, within HER17_RS03430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose+arginine
remove
777,615 + HER17_RS03415 0.88 -0.0
777,615 + HER17_RS03415 0.88 +1.2
777,703 + +0.6
777,780 + +0.3
777,834 - -0.4
777,834 - +1.4
777,843 + +2.1
777,843 + +1.2
777,843 + +0.7
777,843 + +0.3
777,844 - -0.3
777,844 - -1.8
777,844 - +1.1
777,844 - -0.3
777,847 - +0.7
777,863 + -1.3
777,885 + +2.0
777,886 - -0.7
777,886 - +0.7
777,886 - +0.2
777,895 - -2.6
777,913 + -0.4
777,914 - +0.6
777,919 - +0.4
777,967 + +1.7
778,085 + -0.4
778,085 + -1.2
778,085 + +0.0
778,086 - -1.3
778,086 - +0.8
778,086 - +0.3
778,088 + -1.3
778,089 - +0.1
778,089 - -0.0
778,089 - -1.8
778,089 - +0.4
778,106 + -1.1
778,259 - -0.3
778,261 - -3.1
778,285 - -2.1
778,332 - +0.2
778,338 - +0.9
778,347 + +0.1
778,347 + +0.5
778,348 - +1.2
778,501 - +1.1
778,536 + +1.0
778,537 - -0.0
778,552 - +0.3
778,552 - +0.1
778,552 - -0.4
778,552 - -0.1
778,794 + HER17_RS03420 0.29 +1.2
778,799 + HER17_RS03420 0.29 -0.8
778,800 - HER17_RS03420 0.30 +0.3
778,800 - HER17_RS03420 0.30 -0.8
778,871 - HER17_RS03420 0.40 +0.2
778,871 - HER17_RS03420 0.40 -1.3
778,871 - HER17_RS03420 0.40 +0.8
778,871 - HER17_RS03420 0.40 -1.9
778,871 - HER17_RS03420 0.40 +2.3
778,871 - HER17_RS03420 0.40 +0.7
778,965 + HER17_RS03420 0.53 +0.4
778,965 + HER17_RS03420 0.53 +2.0
778,966 - HER17_RS03420 0.54 +0.3
778,966 - HER17_RS03420 0.54 -2.2
779,082 + HER17_RS03420 0.70 +0.1
779,114 + HER17_RS03420 0.75 +1.0
779,159 - HER17_RS03420 0.82 -1.1
779,159 - HER17_RS03420 0.82 -1.5
779,354 + +0.3
779,489 + HER17_RS03425 0.34 -0.3
779,491 + HER17_RS03425 0.34 +1.5
779,491 + HER17_RS03425 0.34 +0.5
779,491 + HER17_RS03425 0.34 -1.3
779,492 - HER17_RS03425 0.34 -0.1
779,492 - HER17_RS03425 0.34 -0.7
779,504 + HER17_RS03425 0.37 -0.5
779,504 + HER17_RS03425 0.37 +0.9
779,505 - HER17_RS03425 0.37 -0.8
779,757 + -0.2
779,798 + +0.8
779,799 - +1.3
779,799 - +1.6
779,864 - +0.7
779,920 + -0.1
779,921 - -0.1
780,005 + HER17_RS03430 0.12 +0.2
780,006 - HER17_RS03430 0.12 -0.4
780,039 - HER17_RS03430 0.15 -0.4
780,139 - HER17_RS03430 0.23 +0.1
780,193 + HER17_RS03430 0.28 -0.6
780,193 + HER17_RS03430 0.28 +0.3
780,193 + HER17_RS03430 0.28 -3.9
780,233 + HER17_RS03430 0.31 -1.4
780,233 + HER17_RS03430 0.31 +1.4
780,233 + HER17_RS03430 0.31 -0.5
780,234 - HER17_RS03430 0.31 +0.2

Or see this region's nucleotide sequence