Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03380 and HER17_RS03385 are separated by 22 nucleotides HER17_RS03385 and HER17_RS03390 are separated by 318 nucleotides HER17_RS03390 and HER17_RS03395 are separated by 56 nucleotides
HER17_RS03380: HER17_RS03380 - PTS sugar transporter subunit IIB, at 769,824 to 770,111
_RS03380
HER17_RS03385: HER17_RS03385 - PTS sugar transporter subunit IIA, at 770,134 to 770,577
_RS03385
HER17_RS03390: HER17_RS03390 - LacI family DNA-binding transcriptional regulator, at 770,896 to 772,086
_RS03390
HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204
_RS03395
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 769.956 kb on - strand, within HER17_RS03380 at 769.995 kb on + strand, within HER17_RS03380 at 769.996 kb on - strand, within HER17_RS03380 at 769.996 kb on - strand, within HER17_RS03380 at 770.048 kb on + strand, within HER17_RS03380 at 770.076 kb on - strand, within HER17_RS03380 at 770.094 kb on + strand at 770.102 kb on + strand at 770.135 kb on + strand at 770.135 kb on + strand at 770.135 kb on + strand at 770.136 kb on - strand at 770.148 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.168 kb on - strand at 770.168 kb on - strand at 770.168 kb on - strand at 770.168 kb on - strand at 770.185 kb on + strand, within HER17_RS03385 at 770.235 kb on + strand, within HER17_RS03385 at 770.236 kb on - strand, within HER17_RS03385 at 770.236 kb on - strand, within HER17_RS03385 at 770.238 kb on + strand, within HER17_RS03385 at 770.250 kb on + strand, within HER17_RS03385 at 770.250 kb on + strand, within HER17_RS03385 at 770.281 kb on + strand, within HER17_RS03385 at 770.281 kb on + strand, within HER17_RS03385 at 770.282 kb on - strand, within HER17_RS03385 at 770.282 kb on - strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.414 kb on + strand, within HER17_RS03385 at 770.414 kb on + strand, within HER17_RS03385 at 770.414 kb on + strand, within HER17_RS03385 at 770.415 kb on - strand, within HER17_RS03385 at 770.441 kb on + strand, within HER17_RS03385 at 770.442 kb on - strand, within HER17_RS03385 at 770.442 kb on - strand, within HER17_RS03385 at 770.456 kb on + strand, within HER17_RS03385 at 770.456 kb on + strand, within HER17_RS03385 at 770.456 kb on + strand, within HER17_RS03385 at 770.457 kb on - strand, within HER17_RS03385 at 770.457 kb on - strand, within HER17_RS03385 at 770.457 kb on - strand, within HER17_RS03385 at 770.493 kb on + strand, within HER17_RS03385 at 770.493 kb on + strand, within HER17_RS03385 at 770.579 kb on - strand at 770.611 kb on + strand at 770.612 kb on - strand at 770.695 kb on + strand at 770.695 kb on + strand at 770.695 kb on + strand at 770.714 kb on - strand at 770.714 kb on - strand at 770.714 kb on - strand at 770.744 kb on + strand at 770.744 kb on + strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.838 kb on - strand at 770.838 kb on - strand at 770.901 kb on + strand at 770.902 kb on - strand at 770.902 kb on - strand at 770.930 kb on + strand at 770.930 kb on + strand at 770.957 kb on + strand at 771.108 kb on - strand, within HER17_RS03390 at 771.229 kb on + strand, within HER17_RS03390 at 771.230 kb on - strand, within HER17_RS03390 at 771.230 kb on - strand, within HER17_RS03390 at 771.233 kb on + strand, within HER17_RS03390 at 771.234 kb on - strand, within HER17_RS03390 at 771.234 kb on - strand, within HER17_RS03390 at 771.403 kb on - strand, within HER17_RS03390 at 771.561 kb on + strand, within HER17_RS03390 at 771.612 kb on - strand, within HER17_RS03390 at 771.637 kb on + strand, within HER17_RS03390 at 771.637 kb on + strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.639 kb on + strand, within HER17_RS03390 at 771.640 kb on - strand, within HER17_RS03390 at 771.651 kb on + strand, within HER17_RS03390 at 771.651 kb on + strand, within HER17_RS03390 at 771.712 kb on + strand, within HER17_RS03390 at 771.736 kb on - strand, within HER17_RS03390 at 771.736 kb on - strand, within HER17_RS03390 at 771.772 kb on + strand, within HER17_RS03390 at 771.791 kb on + strand, within HER17_RS03390 at 771.792 kb on - strand, within HER17_RS03390 at 771.820 kb on - strand, within HER17_RS03390 at 771.820 kb on - strand, within HER17_RS03390 at 771.825 kb on + strand, within HER17_RS03390 at 771.826 kb on - strand, within HER17_RS03390 at 772.084 kb on + strand at 772.085 kb on - strand at 772.120 kb on + strand at 772.121 kb on - strand at 772.121 kb on - strand at 772.144 kb on + strand at 772.144 kb on + strand at 772.145 kb on - strand at 772.145 kb on - strand at 772.166 kb on + strand at 772.167 kb on - strand at 772.167 kb on - strand at 772.417 kb on + strand, within HER17_RS03395 at 772.511 kb on + strand, within HER17_RS03395 at 772.511 kb on + strand, within HER17_RS03395 at 772.512 kb on - strand, within HER17_RS03395 at 772.520 kb on + strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.640 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.661 kb on + strand, within HER17_RS03395 at 772.662 kb on - strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.753 kb on - strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.785 kb on - strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.796 kb on - strand, within HER17_RS03395 at 772.808 kb on + strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.830 kb on + strand, within HER17_RS03395 at 772.831 kb on - strand, within HER17_RS03395 at 772.950 kb on + strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.954 kb on + strand, within HER17_RS03395
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 769,956 - HER17_RS03380 0.46 +1.1 769,995 + HER17_RS03380 0.59 -0.7 769,996 - HER17_RS03380 0.60 -0.4 769,996 - HER17_RS03380 0.60 -0.7 770,048 + HER17_RS03380 0.78 +0.7 770,076 - HER17_RS03380 0.88 -2.1 770,094 + +2.3 770,102 + -0.7 770,135 + +0.4 770,135 + -1.0 770,135 + -0.9 770,136 - -1.7 770,148 + +0.1 770,167 + +1.1 770,167 + -0.0 770,167 + -2.9 770,167 + -1.4 770,167 + +0.8 770,167 + -3.1 770,168 - +0.3 770,168 - -2.6 770,168 - +0.2 770,168 - +0.7 770,185 + HER17_RS03385 0.11 +0.6 770,235 + HER17_RS03385 0.23 +0.2 770,236 - HER17_RS03385 0.23 +0.1 770,236 - HER17_RS03385 0.23 -0.1 770,238 + HER17_RS03385 0.23 +1.3 770,250 + HER17_RS03385 0.26 -1.3 770,250 + HER17_RS03385 0.26 +1.6 770,281 + HER17_RS03385 0.33 -2.3 770,281 + HER17_RS03385 0.33 +1.7 770,282 - HER17_RS03385 0.33 +0.2 770,282 - HER17_RS03385 0.33 +0.1 770,411 + HER17_RS03385 0.62 -1.1 770,411 + HER17_RS03385 0.62 +0.3 770,411 + HER17_RS03385 0.62 -0.3 770,411 + HER17_RS03385 0.62 +0.3 770,411 + HER17_RS03385 0.62 -0.7 770,411 + HER17_RS03385 0.62 +1.8 770,411 + HER17_RS03385 0.62 +0.6 770,411 + HER17_RS03385 0.62 +0.8 770,412 - HER17_RS03385 0.63 +2.5 770,412 - HER17_RS03385 0.63 +1.9 770,412 - HER17_RS03385 0.63 +1.3 770,412 - HER17_RS03385 0.63 +1.3 770,412 - HER17_RS03385 0.63 -1.2 770,412 - HER17_RS03385 0.63 -0.9 770,412 - HER17_RS03385 0.63 +0.9 770,412 - HER17_RS03385 0.63 +0.6 770,412 - HER17_RS03385 0.63 -0.5 770,414 + HER17_RS03385 0.63 +1.1 770,414 + HER17_RS03385 0.63 -1.0 770,414 + HER17_RS03385 0.63 +0.5 770,415 - HER17_RS03385 0.63 +0.1 770,441 + HER17_RS03385 0.69 +0.4 770,442 - HER17_RS03385 0.69 +0.0 770,442 - HER17_RS03385 0.69 +1.4 770,456 + HER17_RS03385 0.73 +0.0 770,456 + HER17_RS03385 0.73 +0.3 770,456 + HER17_RS03385 0.73 +0.4 770,457 - HER17_RS03385 0.73 -1.7 770,457 - HER17_RS03385 0.73 +0.2 770,457 - HER17_RS03385 0.73 +0.8 770,493 + HER17_RS03385 0.81 -0.4 770,493 + HER17_RS03385 0.81 -0.2 770,579 - -2.7 770,611 + -1.3 770,612 - -2.1 770,695 + -1.3 770,695 + +1.0 770,695 + +1.8 770,714 - +0.7 770,714 - -0.7 770,714 - +0.7 770,744 + -1.1 770,744 + +1.2 770,745 - -1.0 770,745 - +0.6 770,745 - +0.5 770,745 - -0.5 770,745 - -3.1 770,745 - +0.0 770,838 - +1.5 770,838 - -2.1 770,901 + +1.7 770,902 - +0.7 770,902 - +1.3 770,930 + +0.2 770,930 + -1.5 770,957 + +0.9 771,108 - HER17_RS03390 0.18 -0.4 771,229 + HER17_RS03390 0.28 +0.2 771,230 - HER17_RS03390 0.28 +0.5 771,230 - HER17_RS03390 0.28 -0.8 771,233 + HER17_RS03390 0.28 +1.2 771,234 - HER17_RS03390 0.28 -0.2 771,234 - HER17_RS03390 0.28 -0.6 771,403 - HER17_RS03390 0.43 +1.2 771,561 + HER17_RS03390 0.56 +0.1 771,612 - HER17_RS03390 0.60 +0.5 771,637 + HER17_RS03390 0.62 -0.3 771,637 + HER17_RS03390 0.62 -0.3 771,638 - HER17_RS03390 0.62 -0.2 771,638 - HER17_RS03390 0.62 +0.5 771,638 - HER17_RS03390 0.62 +0.6 771,639 + HER17_RS03390 0.62 -0.3 771,640 - HER17_RS03390 0.62 -1.1 771,651 + HER17_RS03390 0.63 +0.8 771,651 + HER17_RS03390 0.63 +0.8 771,712 + HER17_RS03390 0.69 +0.8 771,736 - HER17_RS03390 0.71 -1.0 771,736 - HER17_RS03390 0.71 +0.1 771,772 + HER17_RS03390 0.74 +1.1 771,791 + HER17_RS03390 0.75 +0.0 771,792 - HER17_RS03390 0.75 +2.1 771,820 - HER17_RS03390 0.78 +1.2 771,820 - HER17_RS03390 0.78 -2.4 771,825 + HER17_RS03390 0.78 +0.3 771,826 - HER17_RS03390 0.78 +0.7 772,084 + +0.2 772,085 - +2.7 772,120 + -1.3 772,121 - -0.5 772,121 - -1.5 772,144 + -0.4 772,144 + -2.0 772,145 - -2.0 772,145 - -3.3 772,166 + +1.4 772,167 - +1.1 772,167 - +0.6 772,417 + HER17_RS03395 0.26 +1.3 772,511 + HER17_RS03395 0.35 +0.8 772,511 + HER17_RS03395 0.35 -0.6 772,512 - HER17_RS03395 0.35 -1.5 772,520 + HER17_RS03395 0.35 +0.7 772,527 - HER17_RS03395 0.36 +0.1 772,527 - HER17_RS03395 0.36 +2.1 772,527 - HER17_RS03395 0.36 +0.6 772,640 + HER17_RS03395 0.47 +1.3 772,654 + HER17_RS03395 0.48 -0.3 772,654 + HER17_RS03395 0.48 -3.3 772,655 - HER17_RS03395 0.48 -0.4 772,655 - HER17_RS03395 0.48 -1.3 772,655 - HER17_RS03395 0.48 -0.4 772,661 + HER17_RS03395 0.49 +0.7 772,662 - HER17_RS03395 0.49 +0.2 772,752 + HER17_RS03395 0.57 -0.6 772,752 + HER17_RS03395 0.57 -1.1 772,753 - HER17_RS03395 0.57 +0.4 772,784 + HER17_RS03395 0.60 -2.0 772,784 + HER17_RS03395 0.60 -1.7 772,785 - HER17_RS03395 0.60 +0.0 772,795 + HER17_RS03395 0.61 -1.7 772,795 + HER17_RS03395 0.61 +0.4 772,795 + HER17_RS03395 0.61 +0.2 772,795 + HER17_RS03395 0.61 -0.7 772,796 - HER17_RS03395 0.61 -0.5 772,808 + HER17_RS03395 0.63 +0.7 772,809 - HER17_RS03395 0.63 +0.1 772,809 - HER17_RS03395 0.63 -0.1 772,830 + HER17_RS03395 0.65 +0.7 772,831 - HER17_RS03395 0.65 -0.4 772,950 + HER17_RS03395 0.76 +1.4 772,951 - HER17_RS03395 0.76 +0.9 772,951 - HER17_RS03395 0.76 -0.4 772,954 + HER17_RS03395 0.76 -1.6
Or see this region's nucleotide sequence