Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02290

Experiment: M9+glucose+arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS02285 and HER17_RS02290 are separated by 283 nucleotidesHER17_RS02290 and HER17_RS02295 are separated by 31 nucleotides HER17_RS02285: HER17_RS02285 - homoserine O-succinyltransferase, at 505,897 to 506,826 _RS02285 HER17_RS02290: HER17_RS02290 - malate synthase A, at 507,110 to 508,708 _RS02290 HER17_RS02295: HER17_RS02295 - isocitrate lyase, at 508,740 to 510,047 _RS02295 Position (kb) 507 508 509Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 506.154 kb on + strand, within HER17_RS02285at 506.155 kb on - strand, within HER17_RS02285at 506.162 kb on - strand, within HER17_RS02285at 506.179 kb on - strand, within HER17_RS02285at 506.254 kb on + strand, within HER17_RS02285at 506.254 kb on + strand, within HER17_RS02285at 506.301 kb on + strand, within HER17_RS02285at 506.301 kb on + strand, within HER17_RS02285at 506.301 kb on + strand, within HER17_RS02285at 506.301 kb on + strand, within HER17_RS02285at 506.301 kb on + strand, within HER17_RS02285at 506.302 kb on - strand, within HER17_RS02285at 506.312 kb on + strand, within HER17_RS02285at 506.313 kb on - strand, within HER17_RS02285at 506.313 kb on - strand, within HER17_RS02285at 506.313 kb on - strand, within HER17_RS02285at 506.331 kb on - strand, within HER17_RS02285at 506.331 kb on - strand, within HER17_RS02285at 506.331 kb on - strand, within HER17_RS02285at 506.388 kb on - strand, within HER17_RS02285at 506.511 kb on + strand, within HER17_RS02285at 506.512 kb on - strand, within HER17_RS02285at 506.554 kb on + strand, within HER17_RS02285at 506.555 kb on - strand, within HER17_RS02285at 506.574 kb on + strand, within HER17_RS02285at 506.575 kb on - strand, within HER17_RS02285at 506.608 kb on + strand, within HER17_RS02285at 506.609 kb on - strand, within HER17_RS02285at 506.609 kb on - strand, within HER17_RS02285at 506.609 kb on - strand, within HER17_RS02285at 506.609 kb on - strand, within HER17_RS02285at 506.683 kb on + strand, within HER17_RS02285at 506.684 kb on - strand, within HER17_RS02285at 506.684 kb on - strand, within HER17_RS02285at 506.767 kb on + strandat 506.767 kb on + strandat 506.768 kb on - strandat 506.770 kb on + strandat 506.770 kb on + strandat 506.771 kb on - strandat 506.771 kb on - strandat 506.771 kb on - strandat 506.784 kb on + strandat 506.784 kb on + strandat 506.784 kb on + strandat 506.798 kb on + strandat 506.799 kb on - strandat 506.799 kb on - strandat 506.799 kb on - strandat 506.799 kb on - strandat 506.799 kb on - strandat 506.802 kb on + strandat 506.803 kb on - strandat 506.824 kb on + strandat 506.824 kb on + strandat 506.901 kb on + strandat 506.902 kb on - strandat 506.956 kb on - strandat 506.958 kb on + strandat 506.962 kb on - strandat 507.015 kb on - strandat 507.045 kb on + strandat 507.045 kb on + strandat 507.046 kb on - strandat 507.046 kb on - strandat 507.046 kb on - strandat 507.046 kb on - strandat 507.127 kb on - strandat 507.145 kb on + strandat 507.145 kb on + strandat 507.247 kb on - strandat 507.264 kb on + strandat 507.265 kb on - strandat 507.275 kb on - strand, within HER17_RS02290at 507.294 kb on + strand, within HER17_RS02290at 507.295 kb on - strand, within HER17_RS02290at 507.345 kb on + strand, within HER17_RS02290at 507.566 kb on + strand, within HER17_RS02290at 507.701 kb on + strand, within HER17_RS02290at 507.702 kb on - strand, within HER17_RS02290at 507.893 kb on + strand, within HER17_RS02290at 507.900 kb on + strand, within HER17_RS02290at 507.910 kb on + strand, within HER17_RS02290at 507.911 kb on - strand, within HER17_RS02290at 507.911 kb on - strand, within HER17_RS02290at 507.911 kb on - strand, within HER17_RS02290at 507.941 kb on + strand, within HER17_RS02290at 507.942 kb on - strand, within HER17_RS02290at 507.953 kb on + strand, within HER17_RS02290at 507.954 kb on - strand, within HER17_RS02290at 507.966 kb on + strand, within HER17_RS02290at 508.152 kb on + strand, within HER17_RS02290at 508.152 kb on + strand, within HER17_RS02290at 508.152 kb on + strand, within HER17_RS02290at 508.153 kb on - strand, within HER17_RS02290at 508.153 kb on - strand, within HER17_RS02290at 508.156 kb on + strand, within HER17_RS02290at 508.156 kb on + strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.254 kb on + strand, within HER17_RS02290at 508.254 kb on + strand, within HER17_RS02290at 508.323 kb on + strand, within HER17_RS02290at 508.323 kb on + strand, within HER17_RS02290at 508.324 kb on - strand, within HER17_RS02290at 508.324 kb on - strand, within HER17_RS02290at 508.389 kb on - strand, within HER17_RS02290at 508.389 kb on - strand, within HER17_RS02290at 508.389 kb on - strand, within HER17_RS02290at 508.706 kb on + strandat 508.720 kb on - strandat 508.722 kb on + strandat 508.723 kb on - strandat 508.723 kb on - strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.812 kb on - strandat 508.812 kb on - strandat 508.822 kb on - strandat 508.935 kb on + strand, within HER17_RS02295at 508.936 kb on - strand, within HER17_RS02295at 508.940 kb on + strand, within HER17_RS02295at 508.941 kb on - strand, within HER17_RS02295at 508.941 kb on - strand, within HER17_RS02295at 508.975 kb on + strand, within HER17_RS02295at 508.975 kb on + strand, within HER17_RS02295at 508.976 kb on - strand, within HER17_RS02295at 509.008 kb on - strand, within HER17_RS02295at 509.058 kb on + strand, within HER17_RS02295at 509.058 kb on + strand, within HER17_RS02295at 509.058 kb on + strand, within HER17_RS02295at 509.059 kb on - strand, within HER17_RS02295at 509.059 kb on - strand, within HER17_RS02295at 509.077 kb on - strand, within HER17_RS02295at 509.093 kb on - strand, within HER17_RS02295at 509.174 kb on + strand, within HER17_RS02295at 509.174 kb on + strand, within HER17_RS02295at 509.175 kb on - strand, within HER17_RS02295at 509.181 kb on + strand, within HER17_RS02295at 509.181 kb on + strand, within HER17_RS02295at 509.183 kb on + strand, within HER17_RS02295at 509.183 kb on + strand, within HER17_RS02295at 509.184 kb on - strand, within HER17_RS02295at 509.184 kb on - strand, within HER17_RS02295at 509.240 kb on + strand, within HER17_RS02295at 509.241 kb on - strand, within HER17_RS02295at 509.347 kb on + strand, within HER17_RS02295at 509.347 kb on + strand, within HER17_RS02295at 509.425 kb on + strand, within HER17_RS02295at 509.426 kb on - strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.485 kb on - strand, within HER17_RS02295at 509.534 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.578 kb on - strand, within HER17_RS02295at 509.586 kb on + strand, within HER17_RS02295at 509.626 kb on + strand, within HER17_RS02295at 509.688 kb on + strand, within HER17_RS02295at 509.688 kb on + strand, within HER17_RS02295at 509.689 kb on - strand, within HER17_RS02295

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose+arginine
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506,154 + HER17_RS02285 0.28 -3.3
506,155 - HER17_RS02285 0.28 -2.1
506,162 - HER17_RS02285 0.28 -3.5
506,179 - HER17_RS02285 0.30 -2.7
506,254 + HER17_RS02285 0.38 -4.1
506,254 + HER17_RS02285 0.38 -3.8
506,301 + HER17_RS02285 0.43 -2.2
506,301 + HER17_RS02285 0.43 -2.0
506,301 + HER17_RS02285 0.43 -2.1
506,301 + HER17_RS02285 0.43 -3.7
506,301 + HER17_RS02285 0.43 -0.1
506,302 - HER17_RS02285 0.44 -3.4
506,312 + HER17_RS02285 0.45 -3.0
506,313 - HER17_RS02285 0.45 -0.5
506,313 - HER17_RS02285 0.45 -2.2
506,313 - HER17_RS02285 0.45 -6.1
506,331 - HER17_RS02285 0.47 -1.3
506,331 - HER17_RS02285 0.47 -5.6
506,331 - HER17_RS02285 0.47 -3.6
506,388 - HER17_RS02285 0.53 -3.1
506,511 + HER17_RS02285 0.66 -4.4
506,512 - HER17_RS02285 0.66 -4.1
506,554 + HER17_RS02285 0.71 -4.8
506,555 - HER17_RS02285 0.71 -3.6
506,574 + HER17_RS02285 0.73 -2.8
506,575 - HER17_RS02285 0.73 -3.4
506,608 + HER17_RS02285 0.76 -3.8
506,609 - HER17_RS02285 0.77 -4.3
506,609 - HER17_RS02285 0.77 -3.6
506,609 - HER17_RS02285 0.77 -3.9
506,609 - HER17_RS02285 0.77 -2.3
506,683 + HER17_RS02285 0.85 -0.8
506,684 - HER17_RS02285 0.85 -3.1
506,684 - HER17_RS02285 0.85 -1.3
506,767 + -3.4
506,767 + -1.8
506,768 - -1.7
506,770 + -3.5
506,770 + -2.3
506,771 - -4.9
506,771 - -3.3
506,771 - -5.0
506,784 + -0.3
506,784 + +1.5
506,784 + +0.3
506,798 + -1.1
506,799 - -0.6
506,799 - +1.7
506,799 - +0.2
506,799 - +0.6
506,799 - +1.5
506,802 + -2.4
506,803 - -0.2
506,824 + -1.1
506,824 + +1.7
506,901 + +1.1
506,902 - +0.1
506,956 - +2.2
506,958 + -1.1
506,962 - +1.2
507,015 - +1.0
507,045 + -3.4
507,045 + +1.0
507,046 - -2.1
507,046 - -2.5
507,046 - +2.1
507,046 - -0.5
507,127 - +0.6
507,145 + -0.4
507,145 + +0.3
507,247 - +0.0
507,264 + -1.5
507,265 - +0.8
507,275 - HER17_RS02290 0.10 +1.3
507,294 + HER17_RS02290 0.12 -0.3
507,295 - HER17_RS02290 0.12 +0.5
507,345 + HER17_RS02290 0.15 +0.4
507,566 + HER17_RS02290 0.29 +0.7
507,701 + HER17_RS02290 0.37 -0.5
507,702 - HER17_RS02290 0.37 +0.2
507,893 + HER17_RS02290 0.49 -1.1
507,900 + HER17_RS02290 0.49 -0.5
507,910 + HER17_RS02290 0.50 +2.1
507,911 - HER17_RS02290 0.50 +0.7
507,911 - HER17_RS02290 0.50 +1.4
507,911 - HER17_RS02290 0.50 +0.4
507,941 + HER17_RS02290 0.52 +0.3
507,942 - HER17_RS02290 0.52 +0.3
507,953 + HER17_RS02290 0.53 -2.4
507,954 - HER17_RS02290 0.53 -0.8
507,966 + HER17_RS02290 0.54 +0.5
508,152 + HER17_RS02290 0.65 +1.2
508,152 + HER17_RS02290 0.65 +0.6
508,152 + HER17_RS02290 0.65 +0.0
508,153 - HER17_RS02290 0.65 +0.4
508,153 - HER17_RS02290 0.65 +0.2
508,156 + HER17_RS02290 0.65 +0.3
508,156 + HER17_RS02290 0.65 +0.6
508,157 - HER17_RS02290 0.65 -2.5
508,157 - HER17_RS02290 0.65 +0.0
508,157 - HER17_RS02290 0.65 +0.8
508,157 - HER17_RS02290 0.65 +0.5
508,157 - HER17_RS02290 0.65 -0.0
508,254 + HER17_RS02290 0.72 -1.3
508,254 + HER17_RS02290 0.72 -1.4
508,323 + HER17_RS02290 0.76 +1.2
508,323 + HER17_RS02290 0.76 +0.3
508,324 - HER17_RS02290 0.76 -0.1
508,324 - HER17_RS02290 0.76 +0.8
508,389 - HER17_RS02290 0.80 -0.1
508,389 - HER17_RS02290 0.80 -0.6
508,389 - HER17_RS02290 0.80 +0.0
508,706 + +0.2
508,720 - +0.0
508,722 + +1.1
508,723 - -0.9
508,723 - +0.6
508,811 + -0.5
508,811 + +0.2
508,811 + -1.1
508,811 + -0.6
508,811 + +0.3
508,812 - +1.2
508,812 - +0.2
508,822 - -0.1
508,935 + HER17_RS02295 0.15 +1.0
508,936 - HER17_RS02295 0.15 +0.2
508,940 + HER17_RS02295 0.15 +3.4
508,941 - HER17_RS02295 0.15 +0.2
508,941 - HER17_RS02295 0.15 -1.3
508,975 + HER17_RS02295 0.18 +1.4
508,975 + HER17_RS02295 0.18 +1.7
508,976 - HER17_RS02295 0.18 -0.5
509,008 - HER17_RS02295 0.20 -1.0
509,058 + HER17_RS02295 0.24 -0.2
509,058 + HER17_RS02295 0.24 -2.3
509,058 + HER17_RS02295 0.24 -0.4
509,059 - HER17_RS02295 0.24 +0.2
509,059 - HER17_RS02295 0.24 -2.3
509,077 - HER17_RS02295 0.26 +0.7
509,093 - HER17_RS02295 0.27 -0.9
509,174 + HER17_RS02295 0.33 -1.1
509,174 + HER17_RS02295 0.33 -0.6
509,175 - HER17_RS02295 0.33 +0.2
509,181 + HER17_RS02295 0.34 +0.3
509,181 + HER17_RS02295 0.34 -0.9
509,183 + HER17_RS02295 0.34 +0.2
509,183 + HER17_RS02295 0.34 +1.2
509,184 - HER17_RS02295 0.34 +1.3
509,184 - HER17_RS02295 0.34 +0.5
509,240 + HER17_RS02295 0.38 -0.6
509,241 - HER17_RS02295 0.38 +0.1
509,347 + HER17_RS02295 0.46 +0.6
509,347 + HER17_RS02295 0.46 -1.5
509,425 + HER17_RS02295 0.52 -0.3
509,426 - HER17_RS02295 0.52 +0.8
509,484 + HER17_RS02295 0.57 +0.3
509,484 + HER17_RS02295 0.57 +0.0
509,484 + HER17_RS02295 0.57 +0.0
509,485 - HER17_RS02295 0.57 +1.2
509,534 + HER17_RS02295 0.61 -0.0
509,577 + HER17_RS02295 0.64 +0.3
509,577 + HER17_RS02295 0.64 +0.1
509,577 + HER17_RS02295 0.64 -0.8
509,578 - HER17_RS02295 0.64 +1.3
509,586 + HER17_RS02295 0.65 -0.6
509,626 + HER17_RS02295 0.68 -1.3
509,688 + HER17_RS02295 0.72 -1.0
509,688 + HER17_RS02295 0.72 +0.4
509,689 - HER17_RS02295 0.73 -2.1

Or see this region's nucleotide sequence