Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21315 and HER17_RS21320 are separated by 174 nucleotides HER17_RS21320 and HER17_RS21325 are separated by 291 nucleotides
HER17_RS21315: HER17_RS21315 - FAD-binding oxidoreductase, at 4,774,694 to 4,776,007
_RS21315
HER17_RS21320: HER17_RS21320 - NADP-specific glutamate dehydrogenase, at 4,776,182 to 4,777,525
_RS21320
HER17_RS21325: HER17_RS21325 - universal stress protein UspA, at 4,777,817 to 4,778,254
_RS21325
Position (kb) 4776
4777
4778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4775.198 kb on + strand, within HER17_RS21315 at 4775.199 kb on - strand, within HER17_RS21315 at 4775.199 kb on - strand, within HER17_RS21315 at 4775.391 kb on + strand, within HER17_RS21315 at 4775.458 kb on + strand, within HER17_RS21315 at 4775.459 kb on - strand, within HER17_RS21315 at 4775.470 kb on + strand, within HER17_RS21315 at 4775.471 kb on - strand, within HER17_RS21315 at 4775.487 kb on + strand, within HER17_RS21315 at 4775.488 kb on - strand, within HER17_RS21315 at 4775.488 kb on - strand, within HER17_RS21315 at 4775.497 kb on + strand, within HER17_RS21315 at 4775.498 kb on - strand, within HER17_RS21315 at 4775.501 kb on + strand, within HER17_RS21315 at 4775.501 kb on + strand, within HER17_RS21315 at 4775.501 kb on + strand, within HER17_RS21315 at 4775.501 kb on + strand, within HER17_RS21315 at 4775.502 kb on - strand, within HER17_RS21315 at 4775.502 kb on - strand, within HER17_RS21315 at 4775.539 kb on - strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.571 kb on + strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.572 kb on - strand, within HER17_RS21315 at 4775.576 kb on - strand, within HER17_RS21315 at 4775.616 kb on + strand, within HER17_RS21315 at 4775.617 kb on - strand, within HER17_RS21315 at 4775.617 kb on - strand, within HER17_RS21315 at 4775.647 kb on + strand, within HER17_RS21315 at 4775.648 kb on - strand, within HER17_RS21315 at 4775.648 kb on - strand, within HER17_RS21315 at 4775.779 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.827 kb on + strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.828 kb on - strand, within HER17_RS21315 at 4775.972 kb on - strand at 4776.015 kb on + strand at 4776.015 kb on + strand at 4776.015 kb on + strand at 4776.016 kb on - strand at 4776.016 kb on - strand at 4776.016 kb on - strand at 4776.038 kb on + strand at 4776.039 kb on - strand at 4776.039 kb on - strand at 4776.050 kb on - strand at 4776.050 kb on - strand at 4776.070 kb on - strand at 4776.070 kb on - strand at 4776.074 kb on + strand at 4776.075 kb on - strand at 4776.075 kb on - strand at 4776.122 kb on - strand at 4776.130 kb on - strand at 4776.184 kb on - strand at 4776.252 kb on + strand at 4776.252 kb on + strand at 4776.252 kb on + strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.253 kb on - strand at 4776.256 kb on + strand at 4776.256 kb on + strand at 4776.256 kb on + strand at 4776.256 kb on + strand at 4776.256 kb on + strand at 4776.257 kb on - strand at 4776.279 kb on + strand at 4776.301 kb on + strand at 4776.481 kb on + strand, within HER17_RS21320 at 4776.588 kb on - strand, within HER17_RS21320 at 4776.615 kb on + strand, within HER17_RS21320 at 4776.615 kb on + strand, within HER17_RS21320 at 4776.671 kb on - strand, within HER17_RS21320 at 4776.723 kb on - strand, within HER17_RS21320 at 4776.789 kb on + strand, within HER17_RS21320 at 4776.789 kb on + strand, within HER17_RS21320 at 4776.876 kb on + strand, within HER17_RS21320 at 4776.877 kb on - strand, within HER17_RS21320 at 4776.877 kb on - strand, within HER17_RS21320 at 4777.063 kb on - strand, within HER17_RS21320 at 4777.254 kb on + strand, within HER17_RS21320 at 4777.305 kb on - strand, within HER17_RS21320 at 4777.305 kb on - strand, within HER17_RS21320 at 4777.305 kb on - strand, within HER17_RS21320 at 4777.392 kb on + strand at 4777.392 kb on + strand at 4777.392 kb on + strand at 4777.393 kb on - strand at 4777.393 kb on - strand at 4777.451 kb on + strand at 4777.511 kb on + strand at 4777.548 kb on + strand at 4777.548 kb on + strand at 4777.549 kb on - strand at 4777.549 kb on - strand at 4777.568 kb on + strand at 4777.627 kb on + strand at 4777.628 kb on - strand at 4777.628 kb on - strand at 4777.629 kb on + strand at 4777.629 kb on + strand at 4777.630 kb on - strand at 4777.630 kb on - strand at 4777.646 kb on - strand at 4777.649 kb on + strand at 4777.649 kb on + strand at 4777.650 kb on - strand at 4777.668 kb on - strand at 4777.681 kb on + strand at 4777.736 kb on - strand at 4777.746 kb on + strand at 4777.748 kb on + strand at 4777.748 kb on + strand at 4777.748 kb on + strand at 4777.749 kb on - strand at 4777.766 kb on + strand at 4777.865 kb on + strand, within HER17_RS21325 at 4777.865 kb on + strand, within HER17_RS21325 at 4777.866 kb on - strand, within HER17_RS21325 at 4777.866 kb on - strand, within HER17_RS21325 at 4777.866 kb on - strand, within HER17_RS21325 at 4777.870 kb on + strand, within HER17_RS21325 at 4777.873 kb on + strand, within HER17_RS21325 at 4777.873 kb on + strand, within HER17_RS21325 at 4777.950 kb on + strand, within HER17_RS21325 at 4777.950 kb on + strand, within HER17_RS21325 at 4777.951 kb on - strand, within HER17_RS21325 at 4777.951 kb on - strand, within HER17_RS21325 at 4777.973 kb on + strand, within HER17_RS21325 at 4777.974 kb on - strand, within HER17_RS21325 at 4778.014 kb on + strand, within HER17_RS21325 at 4778.071 kb on + strand, within HER17_RS21325 at 4778.071 kb on + strand, within HER17_RS21325 at 4778.072 kb on - strand, within HER17_RS21325 at 4778.072 kb on - strand, within HER17_RS21325 at 4778.072 kb on - strand, within HER17_RS21325 at 4778.115 kb on + strand, within HER17_RS21325 at 4778.115 kb on + strand, within HER17_RS21325 at 4778.116 kb on - strand, within HER17_RS21325 at 4778.127 kb on + strand, within HER17_RS21325 at 4778.127 kb on + strand, within HER17_RS21325 at 4778.128 kb on - strand, within HER17_RS21325 at 4778.128 kb on - strand, within HER17_RS21325 at 4778.166 kb on + strand, within HER17_RS21325 at 4778.166 kb on + strand, within HER17_RS21325 at 4778.167 kb on - strand, within HER17_RS21325 at 4778.167 kb on - strand, within HER17_RS21325 at 4778.167 kb on - strand, within HER17_RS21325 at 4778.247 kb on + strand at 4778.247 kb on + strand at 4778.248 kb on - strand at 4778.255 kb on - strand at 4778.255 kb on - strand at 4778.257 kb on + strand at 4778.258 kb on - strand at 4778.278 kb on + strand at 4778.279 kb on - strand at 4778.279 kb on - strand at 4778.282 kb on + strand at 4778.283 kb on - strand at 4778.296 kb on + strand at 4778.316 kb on + strand at 4778.320 kb on + strand at 4778.320 kb on + strand at 4778.332 kb on - strand at 4778.333 kb on + strand at 4778.333 kb on + strand at 4778.334 kb on - strand at 4778.334 kb on - strand at 4778.360 kb on + strand at 4778.361 kb on - strand at 4778.408 kb on + strand at 4778.408 kb on + strand at 4778.408 kb on + strand at 4778.408 kb on + strand at 4778.408 kb on + strand at 4778.409 kb on - strand at 4778.409 kb on - strand at 4778.409 kb on - strand at 4778.409 kb on - strand at 4778.409 kb on - strand at 4778.415 kb on - strand at 4778.418 kb on - strand at 4778.441 kb on - strand at 4778.474 kb on + strand at 4778.474 kb on + strand at 4778.474 kb on + strand at 4778.475 kb on - strand at 4778.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 4,775,198 + HER17_RS21315 0.38 -1.7 4,775,199 - HER17_RS21315 0.38 +1.0 4,775,199 - HER17_RS21315 0.38 -0.1 4,775,391 + HER17_RS21315 0.53 +0.0 4,775,458 + HER17_RS21315 0.58 +0.2 4,775,459 - HER17_RS21315 0.58 +0.2 4,775,470 + HER17_RS21315 0.59 +0.1 4,775,471 - HER17_RS21315 0.59 -1.9 4,775,487 + HER17_RS21315 0.60 -3.5 4,775,488 - HER17_RS21315 0.60 +0.1 4,775,488 - HER17_RS21315 0.60 -0.3 4,775,497 + HER17_RS21315 0.61 -0.1 4,775,498 - HER17_RS21315 0.61 +0.6 4,775,501 + HER17_RS21315 0.61 +0.6 4,775,501 + HER17_RS21315 0.61 +0.2 4,775,501 + HER17_RS21315 0.61 +1.4 4,775,501 + HER17_RS21315 0.61 -1.9 4,775,502 - HER17_RS21315 0.61 +0.1 4,775,502 - HER17_RS21315 0.61 +0.1 4,775,539 - HER17_RS21315 0.64 +0.1 4,775,571 + HER17_RS21315 0.67 -1.7 4,775,571 + HER17_RS21315 0.67 -1.0 4,775,571 + HER17_RS21315 0.67 +1.5 4,775,571 + HER17_RS21315 0.67 +0.8 4,775,571 + HER17_RS21315 0.67 -0.3 4,775,571 + HER17_RS21315 0.67 +0.3 4,775,571 + HER17_RS21315 0.67 +0.4 4,775,571 + HER17_RS21315 0.67 -0.0 4,775,571 + HER17_RS21315 0.67 +0.4 4,775,571 + HER17_RS21315 0.67 +0.3 4,775,571 + HER17_RS21315 0.67 +0.1 4,775,571 + HER17_RS21315 0.67 -0.7 4,775,572 - HER17_RS21315 0.67 -0.4 4,775,572 - HER17_RS21315 0.67 -0.9 4,775,572 - HER17_RS21315 0.67 +0.6 4,775,572 - HER17_RS21315 0.67 -0.5 4,775,572 - HER17_RS21315 0.67 -0.5 4,775,572 - HER17_RS21315 0.67 +0.4 4,775,572 - HER17_RS21315 0.67 -0.9 4,775,572 - HER17_RS21315 0.67 -1.1 4,775,572 - HER17_RS21315 0.67 +1.2 4,775,572 - HER17_RS21315 0.67 +0.7 4,775,572 - HER17_RS21315 0.67 +0.8 4,775,572 - HER17_RS21315 0.67 +0.4 4,775,572 - HER17_RS21315 0.67 +0.2 4,775,572 - HER17_RS21315 0.67 -1.4 4,775,572 - HER17_RS21315 0.67 +0.7 4,775,572 - HER17_RS21315 0.67 +1.1 4,775,572 - HER17_RS21315 0.67 +2.2 4,775,572 - HER17_RS21315 0.67 -0.2 4,775,572 - HER17_RS21315 0.67 +0.0 4,775,576 - HER17_RS21315 0.67 -1.0 4,775,616 + HER17_RS21315 0.70 +0.9 4,775,617 - HER17_RS21315 0.70 +0.7 4,775,617 - HER17_RS21315 0.70 -0.6 4,775,647 + HER17_RS21315 0.73 +0.4 4,775,648 - HER17_RS21315 0.73 -0.3 4,775,648 - HER17_RS21315 0.73 -1.9 4,775,779 + HER17_RS21315 0.83 -0.2 4,775,827 + HER17_RS21315 0.86 +1.3 4,775,827 + HER17_RS21315 0.86 -0.1 4,775,827 + HER17_RS21315 0.86 +0.3 4,775,827 + HER17_RS21315 0.86 +0.8 4,775,827 + HER17_RS21315 0.86 -0.2 4,775,827 + HER17_RS21315 0.86 +0.5 4,775,827 + HER17_RS21315 0.86 +0.1 4,775,827 + HER17_RS21315 0.86 +0.7 4,775,828 - HER17_RS21315 0.86 +0.8 4,775,828 - HER17_RS21315 0.86 +2.3 4,775,828 - HER17_RS21315 0.86 +0.6 4,775,828 - HER17_RS21315 0.86 -0.5 4,775,828 - HER17_RS21315 0.86 -0.3 4,775,828 - HER17_RS21315 0.86 -1.7 4,775,828 - HER17_RS21315 0.86 -1.6 4,775,828 - HER17_RS21315 0.86 -0.9 4,775,972 - +1.6 4,776,015 + -0.6 4,776,015 + +0.4 4,776,015 + +0.3 4,776,016 - +0.7 4,776,016 - -1.4 4,776,016 - +0.4 4,776,038 + -0.3 4,776,039 - -0.7 4,776,039 - -0.3 4,776,050 - +0.0 4,776,050 - +0.6 4,776,070 - +0.2 4,776,070 - -1.8 4,776,074 + -0.8 4,776,075 - +3.0 4,776,075 - +1.0 4,776,122 - +0.9 4,776,130 - +0.4 4,776,184 - +0.3 4,776,252 + +1.0 4,776,252 + -0.5 4,776,252 + +0.0 4,776,253 - +0.2 4,776,253 - +0.4 4,776,253 - -1.0 4,776,253 - +0.1 4,776,253 - -0.5 4,776,253 - -3.3 4,776,253 - -1.1 4,776,253 - -0.0 4,776,253 - +0.7 4,776,256 + +0.8 4,776,256 + -1.2 4,776,256 + +1.2 4,776,256 + -3.3 4,776,256 + +0.1 4,776,257 - +0.3 4,776,279 + -0.0 4,776,301 + +0.3 4,776,481 + HER17_RS21320 0.22 +0.8 4,776,588 - HER17_RS21320 0.30 +0.7 4,776,615 + HER17_RS21320 0.32 +0.4 4,776,615 + HER17_RS21320 0.32 -2.6 4,776,671 - HER17_RS21320 0.36 -0.8 4,776,723 - HER17_RS21320 0.40 -1.5 4,776,789 + HER17_RS21320 0.45 +0.7 4,776,789 + HER17_RS21320 0.45 -0.5 4,776,876 + HER17_RS21320 0.52 +0.1 4,776,877 - HER17_RS21320 0.52 +0.3 4,776,877 - HER17_RS21320 0.52 -0.2 4,777,063 - HER17_RS21320 0.66 -0.5 4,777,254 + HER17_RS21320 0.80 +1.2 4,777,305 - HER17_RS21320 0.84 -2.5 4,777,305 - HER17_RS21320 0.84 +0.0 4,777,305 - HER17_RS21320 0.84 -0.3 4,777,392 + -1.6 4,777,392 + -0.2 4,777,392 + -0.6 4,777,393 - -0.6 4,777,393 - +0.6 4,777,451 + +1.0 4,777,511 + -0.3 4,777,548 + +2.0 4,777,548 + +1.9 4,777,549 - +0.6 4,777,549 - +0.3 4,777,568 + +0.2 4,777,627 + +1.6 4,777,628 - -0.6 4,777,628 - +0.6 4,777,629 + -1.6 4,777,629 + +0.1 4,777,630 - +1.4 4,777,630 - -1.3 4,777,646 - +0.1 4,777,649 + -1.6 4,777,649 + +0.3 4,777,650 - -1.4 4,777,668 - +1.4 4,777,681 + +0.1 4,777,736 - +0.5 4,777,746 + +0.8 4,777,748 + +0.5 4,777,748 + -2.5 4,777,748 + -0.2 4,777,749 - -1.0 4,777,766 + +1.2 4,777,865 + HER17_RS21325 0.11 -0.9 4,777,865 + HER17_RS21325 0.11 +0.7 4,777,866 - HER17_RS21325 0.11 +0.5 4,777,866 - HER17_RS21325 0.11 +0.2 4,777,866 - HER17_RS21325 0.11 +0.6 4,777,870 + HER17_RS21325 0.12 +0.6 4,777,873 + HER17_RS21325 0.13 -0.4 4,777,873 + HER17_RS21325 0.13 +0.8 4,777,950 + HER17_RS21325 0.30 -1.5 4,777,950 + HER17_RS21325 0.30 +0.9 4,777,951 - HER17_RS21325 0.31 +1.2 4,777,951 - HER17_RS21325 0.31 +0.5 4,777,973 + HER17_RS21325 0.36 -0.3 4,777,974 - HER17_RS21325 0.36 -0.0 4,778,014 + HER17_RS21325 0.45 +0.5 4,778,071 + HER17_RS21325 0.58 +1.1 4,778,071 + HER17_RS21325 0.58 +0.1 4,778,072 - HER17_RS21325 0.58 +0.4 4,778,072 - HER17_RS21325 0.58 +0.7 4,778,072 - HER17_RS21325 0.58 -1.6 4,778,115 + HER17_RS21325 0.68 +1.4 4,778,115 + HER17_RS21325 0.68 -0.9 4,778,116 - HER17_RS21325 0.68 +1.4 4,778,127 + HER17_RS21325 0.71 +0.7 4,778,127 + HER17_RS21325 0.71 +0.0 4,778,128 - HER17_RS21325 0.71 -0.5 4,778,128 - HER17_RS21325 0.71 +0.4 4,778,166 + HER17_RS21325 0.80 +0.6 4,778,166 + HER17_RS21325 0.80 -0.3 4,778,167 - HER17_RS21325 0.80 -2.1 4,778,167 - HER17_RS21325 0.80 +0.3 4,778,167 - HER17_RS21325 0.80 +0.8 4,778,247 + +0.0 4,778,247 + -0.3 4,778,248 - -1.3 4,778,255 - +2.2 4,778,255 - -0.5 4,778,257 + +1.7 4,778,258 - +0.7 4,778,278 + +1.7 4,778,279 - +0.6 4,778,279 - -1.9 4,778,282 + +0.4 4,778,283 - +0.3 4,778,296 + +1.6 4,778,316 + -0.6 4,778,320 + +0.5 4,778,320 + +0.7 4,778,332 - -1.0 4,778,333 + +0.4 4,778,333 + -1.1 4,778,334 - -2.8 4,778,334 - -0.8 4,778,360 + -0.3 4,778,361 - +0.6 4,778,408 + +0.7 4,778,408 + -0.5 4,778,408 + -1.1 4,778,408 + +0.6 4,778,408 + -0.1 4,778,409 - -2.0 4,778,409 - +1.5 4,778,409 - -1.9 4,778,409 - -0.6 4,778,409 - -0.7 4,778,415 - -3.1 4,778,418 - +0.5 4,778,441 - +0.5 4,778,474 + -0.4 4,778,474 + +0.4 4,778,474 + +0.2 4,778,475 - -1.4 4,778,475 - +1.4
Or see this region's nucleotide sequence