Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20935 and HER17_RS20940 are separated by 278 nucleotides HER17_RS20940 and HER17_RS20945 are separated by 47 nucleotides HER17_RS20945 and HER17_RS20950 are separated by 113 nucleotides HER17_RS20950 and HER17_RS20955 are separated by 42 nucleotides HER17_RS20955 and HER17_RS20960 overlap by 76 nucleotides
HER17_RS20935: HER17_RS20935 - class I SAM-dependent methyltransferase, at 4,686,623 to 4,687,417
_RS20935
HER17_RS20940: HER17_RS20940 - hypothetical protein, at 4,687,696 to 4,688,253
_RS20940
HER17_RS20945: HER17_RS20945 - hypothetical protein, at 4,688,301 to 4,688,846
_RS20945
HER17_RS20950: HER17_RS20950 - hypothetical protein, at 4,688,960 to 4,689,346
_RS20950
HER17_RS20955: HER17_RS20955 - DUF596 domain-containing protein, at 4,689,389 to 4,689,838
_RS20955
HER17_RS20960: HER17_RS20960 - AI-2E family transporter, at 4,689,763 to 4,690,977
_RS20960
Position (kb) 4688
4689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4687.344 kb on + strand at 4687.385 kb on - strand at 4687.400 kb on - strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.405 kb on - strand at 4687.405 kb on - strand at 4687.408 kb on + strand at 4687.408 kb on + strand at 4687.409 kb on - strand at 4687.432 kb on + strand at 4687.432 kb on + strand at 4687.433 kb on - strand at 4687.433 kb on - strand at 4687.461 kb on + strand at 4687.487 kb on - strand at 4687.487 kb on - strand at 4687.497 kb on + strand at 4687.505 kb on - strand at 4687.505 kb on - strand at 4687.505 kb on - strand at 4687.516 kb on - strand at 4687.528 kb on + strand at 4687.528 kb on + strand at 4687.532 kb on - strand at 4687.588 kb on - strand at 4687.590 kb on + strand at 4687.591 kb on - strand at 4687.591 kb on - strand at 4687.591 kb on - strand at 4687.591 kb on - strand at 4687.734 kb on - strand at 4687.764 kb on + strand, within HER17_RS20940 at 4687.764 kb on + strand, within HER17_RS20940 at 4687.768 kb on + strand, within HER17_RS20940 at 4687.768 kb on + strand, within HER17_RS20940 at 4687.769 kb on - strand, within HER17_RS20940 at 4687.769 kb on - strand, within HER17_RS20940 at 4687.786 kb on + strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.825 kb on + strand, within HER17_RS20940 at 4687.854 kb on - strand, within HER17_RS20940 at 4687.925 kb on - strand, within HER17_RS20940 at 4688.019 kb on + strand, within HER17_RS20940 at 4688.036 kb on + strand, within HER17_RS20940 at 4688.071 kb on + strand, within HER17_RS20940 at 4688.072 kb on - strand, within HER17_RS20940 at 4688.072 kb on - strand, within HER17_RS20940 at 4688.072 kb on - strand, within HER17_RS20940 at 4688.102 kb on - strand, within HER17_RS20940 at 4688.109 kb on + strand, within HER17_RS20940 at 4688.109 kb on + strand, within HER17_RS20940 at 4688.110 kb on - strand, within HER17_RS20940 at 4688.140 kb on - strand, within HER17_RS20940 at 4688.164 kb on + strand, within HER17_RS20940 at 4688.218 kb on + strand at 4688.218 kb on + strand at 4688.374 kb on + strand, within HER17_RS20945 at 4688.378 kb on - strand, within HER17_RS20945 at 4688.455 kb on + strand, within HER17_RS20945 at 4688.455 kb on + strand, within HER17_RS20945 at 4688.456 kb on - strand, within HER17_RS20945 at 4688.456 kb on - strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.459 kb on - strand, within HER17_RS20945 at 4688.459 kb on - strand, within HER17_RS20945 at 4688.459 kb on - strand, within HER17_RS20945 at 4688.462 kb on - strand, within HER17_RS20945 at 4688.462 kb on - strand, within HER17_RS20945 at 4688.523 kb on - strand, within HER17_RS20945 at 4688.639 kb on + strand, within HER17_RS20945 at 4688.673 kb on - strand, within HER17_RS20945 at 4688.673 kb on - strand, within HER17_RS20945 at 4688.673 kb on - strand, within HER17_RS20945 at 4688.675 kb on + strand, within HER17_RS20945 at 4688.676 kb on - strand, within HER17_RS20945 at 4688.676 kb on - strand, within HER17_RS20945 at 4688.707 kb on + strand, within HER17_RS20945 at 4688.779 kb on + strand, within HER17_RS20945 at 4688.779 kb on + strand, within HER17_RS20945 at 4688.779 kb on + strand, within HER17_RS20945 at 4688.780 kb on - strand, within HER17_RS20945 at 4688.780 kb on - strand, within HER17_RS20945 at 4688.817 kb on + strand at 4688.846 kb on + strand at 4688.847 kb on - strand at 4688.891 kb on - strand at 4688.921 kb on + strand at 4688.922 kb on - strand at 4688.942 kb on - strand at 4688.942 kb on - strand at 4688.945 kb on - strand at 4688.948 kb on - strand at 4688.975 kb on + strand at 4688.978 kb on + strand at 4688.979 kb on - strand at 4688.979 kb on - strand at 4688.979 kb on - strand at 4689.018 kb on + strand, within HER17_RS20950 at 4689.018 kb on + strand, within HER17_RS20950 at 4689.018 kb on + strand, within HER17_RS20950 at 4689.019 kb on - strand, within HER17_RS20950 at 4689.019 kb on - strand, within HER17_RS20950 at 4689.220 kb on - strand, within HER17_RS20950 at 4689.249 kb on + strand, within HER17_RS20950 at 4689.250 kb on - strand, within HER17_RS20950 at 4689.302 kb on - strand, within HER17_RS20950 at 4689.330 kb on - strand at 4689.407 kb on + strand at 4689.407 kb on + strand at 4689.407 kb on + strand at 4689.408 kb on - strand at 4689.408 kb on - strand at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.497 kb on + strand, within HER17_RS20955 at 4689.498 kb on - strand, within HER17_RS20955 at 4689.498 kb on - strand, within HER17_RS20955 at 4689.750 kb on + strand, within HER17_RS20955 at 4689.769 kb on + strand at 4689.770 kb on - strand at 4689.770 kb on - strand at 4689.770 kb on - strand at 4689.777 kb on + strand at 4689.777 kb on + strand at 4689.777 kb on + strand at 4689.777 kb on + strand at 4689.778 kb on - strand at 4689.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 4,687,344 + -1.0 4,687,385 - -0.3 4,687,400 - -1.0 4,687,404 + -0.8 4,687,404 + +1.0 4,687,404 + +0.1 4,687,404 + -2.0 4,687,404 + -1.0 4,687,405 - -2.4 4,687,405 - -1.6 4,687,408 + +0.7 4,687,408 + -1.0 4,687,409 - -0.9 4,687,432 + +0.6 4,687,432 + -0.2 4,687,433 - +2.0 4,687,433 - +0.2 4,687,461 + -0.5 4,687,487 - -0.1 4,687,487 - -1.8 4,687,497 + -0.7 4,687,505 - -0.2 4,687,505 - -0.9 4,687,505 - +0.3 4,687,516 - +0.3 4,687,528 + -0.3 4,687,528 + +0.8 4,687,532 - -1.6 4,687,588 - +2.1 4,687,590 + -0.6 4,687,591 - +0.2 4,687,591 - +0.6 4,687,591 - +0.6 4,687,591 - -1.4 4,687,734 - -0.4 4,687,764 + HER17_RS20940 0.12 -1.0 4,687,764 + HER17_RS20940 0.12 +0.0 4,687,768 + HER17_RS20940 0.13 -0.8 4,687,768 + HER17_RS20940 0.13 +0.2 4,687,769 - HER17_RS20940 0.13 -1.2 4,687,769 - HER17_RS20940 0.13 +0.5 4,687,786 + HER17_RS20940 0.16 -0.3 4,687,796 - HER17_RS20940 0.18 +0.4 4,687,796 - HER17_RS20940 0.18 +0.9 4,687,796 - HER17_RS20940 0.18 +1.1 4,687,796 - HER17_RS20940 0.18 +0.5 4,687,803 + HER17_RS20940 0.19 +1.2 4,687,803 + HER17_RS20940 0.19 -0.0 4,687,803 + HER17_RS20940 0.19 -1.2 4,687,803 + HER17_RS20940 0.19 +0.3 4,687,825 + HER17_RS20940 0.23 +0.1 4,687,854 - HER17_RS20940 0.28 +0.5 4,687,925 - HER17_RS20940 0.41 -0.7 4,688,019 + HER17_RS20940 0.58 -0.0 4,688,036 + HER17_RS20940 0.61 -0.2 4,688,071 + HER17_RS20940 0.67 +0.6 4,688,072 - HER17_RS20940 0.67 -0.3 4,688,072 - HER17_RS20940 0.67 +0.4 4,688,072 - HER17_RS20940 0.67 +0.3 4,688,102 - HER17_RS20940 0.73 +0.9 4,688,109 + HER17_RS20940 0.74 +0.5 4,688,109 + HER17_RS20940 0.74 +1.1 4,688,110 - HER17_RS20940 0.74 -0.7 4,688,140 - HER17_RS20940 0.80 -1.2 4,688,164 + HER17_RS20940 0.84 +0.1 4,688,218 + +0.2 4,688,218 + -0.8 4,688,374 + HER17_RS20945 0.13 +0.2 4,688,378 - HER17_RS20945 0.14 +1.1 4,688,455 + HER17_RS20945 0.28 -2.8 4,688,455 + HER17_RS20945 0.28 +0.8 4,688,456 - HER17_RS20945 0.28 +0.6 4,688,456 - HER17_RS20945 0.28 +0.3 4,688,458 + HER17_RS20945 0.29 -3.0 4,688,458 + HER17_RS20945 0.29 -0.1 4,688,458 + HER17_RS20945 0.29 -0.8 4,688,458 + HER17_RS20945 0.29 +1.0 4,688,458 + HER17_RS20945 0.29 +1.8 4,688,459 - HER17_RS20945 0.29 +0.4 4,688,459 - HER17_RS20945 0.29 +0.8 4,688,459 - HER17_RS20945 0.29 +0.1 4,688,462 - HER17_RS20945 0.29 +0.9 4,688,462 - HER17_RS20945 0.29 +0.8 4,688,523 - HER17_RS20945 0.41 -1.2 4,688,639 + HER17_RS20945 0.62 -1.9 4,688,673 - HER17_RS20945 0.68 -2.2 4,688,673 - HER17_RS20945 0.68 -1.3 4,688,673 - HER17_RS20945 0.68 +0.1 4,688,675 + HER17_RS20945 0.68 +0.4 4,688,676 - HER17_RS20945 0.69 -0.1 4,688,676 - HER17_RS20945 0.69 +1.0 4,688,707 + HER17_RS20945 0.74 +0.5 4,688,779 + HER17_RS20945 0.88 -1.7 4,688,779 + HER17_RS20945 0.88 +0.2 4,688,779 + HER17_RS20945 0.88 +0.9 4,688,780 - HER17_RS20945 0.88 +0.0 4,688,780 - HER17_RS20945 0.88 +1.6 4,688,817 + -0.2 4,688,846 + -0.1 4,688,847 - +0.8 4,688,891 - +2.7 4,688,921 + +0.6 4,688,922 - -0.2 4,688,942 - -0.3 4,688,942 - -0.1 4,688,945 - +0.6 4,688,948 - +0.6 4,688,975 + +0.1 4,688,978 + -0.3 4,688,979 - +1.2 4,688,979 - -0.8 4,688,979 - +0.3 4,689,018 + HER17_RS20950 0.15 -1.0 4,689,018 + HER17_RS20950 0.15 -1.5 4,689,018 + HER17_RS20950 0.15 +0.7 4,689,019 - HER17_RS20950 0.15 +0.4 4,689,019 - HER17_RS20950 0.15 +1.4 4,689,220 - HER17_RS20950 0.67 -1.9 4,689,249 + HER17_RS20950 0.75 +0.5 4,689,250 - HER17_RS20950 0.75 -0.5 4,689,302 - HER17_RS20950 0.88 -0.6 4,689,330 - -0.4 4,689,407 + -1.6 4,689,407 + -1.1 4,689,407 + -2.6 4,689,408 - -0.0 4,689,408 - +0.3 4,689,463 + HER17_RS20955 0.16 +0.6 4,689,463 + HER17_RS20955 0.16 -0.9 4,689,463 + HER17_RS20955 0.16 -1.1 4,689,463 + HER17_RS20955 0.16 -0.6 4,689,463 + HER17_RS20955 0.16 -0.4 4,689,463 + HER17_RS20955 0.16 -0.5 4,689,464 - HER17_RS20955 0.17 +0.0 4,689,464 - HER17_RS20955 0.17 +0.0 4,689,464 - HER17_RS20955 0.17 -0.5 4,689,464 - HER17_RS20955 0.17 -0.4 4,689,464 - HER17_RS20955 0.17 -1.7 4,689,464 - HER17_RS20955 0.17 -0.4 4,689,464 - HER17_RS20955 0.17 -0.8 4,689,464 - HER17_RS20955 0.17 -0.3 4,689,497 + HER17_RS20955 0.24 -0.3 4,689,498 - HER17_RS20955 0.24 +1.0 4,689,498 - HER17_RS20955 0.24 +2.3 4,689,750 + HER17_RS20955 0.80 +0.4 4,689,769 + +0.5 4,689,770 - +1.1 4,689,770 - +0.4 4,689,770 - +0.3 4,689,777 + -1.6 4,689,777 + -0.8 4,689,777 + +0.7 4,689,777 + +1.6 4,689,778 - +0.3 4,689,778 - +0.9
Or see this region's nucleotide sequence