Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20920 and HER17_RS22020 are separated by 5 nucleotides HER17_RS22020 and HER17_RS20925 are separated by 48 nucleotides HER17_RS20925 and HER17_RS20930 overlap by 4 nucleotides HER17_RS20930 and HER17_RS20935 are separated by 342 nucleotides
HER17_RS20920: HER17_RS20920 - DNA damage-inducible protein D, at 4,684,510 to 4,685,334
_RS20920
HER17_RS22020: HER17_RS22020 - hypothetical protein, at 4,685,340 to 4,685,624
_RS22020
HER17_RS20925: HER17_RS20925 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 4,685,673 to 4,685,894
_RS20925
HER17_RS20930: HER17_RS20930 - type II toxin-antitoxin system death-on-curing family toxin, at 4,685,891 to 4,686,280
_RS20930
HER17_RS20935: HER17_RS20935 - class I SAM-dependent methyltransferase, at 4,686,623 to 4,687,417
_RS20935
Position (kb) 4685
4686
4687 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4684.918 kb on - strand, within HER17_RS20920 at 4684.949 kb on + strand, within HER17_RS20920 at 4684.988 kb on + strand, within HER17_RS20920 at 4684.989 kb on - strand, within HER17_RS20920 at 4684.989 kb on - strand, within HER17_RS20920 at 4685.028 kb on - strand, within HER17_RS20920 at 4685.029 kb on + strand, within HER17_RS20920 at 4685.029 kb on + strand, within HER17_RS20920 at 4685.030 kb on - strand, within HER17_RS20920 at 4685.030 kb on - strand, within HER17_RS20920 at 4685.124 kb on + strand, within HER17_RS20920 at 4685.124 kb on + strand, within HER17_RS20920 at 4685.125 kb on - strand, within HER17_RS20920 at 4685.129 kb on + strand, within HER17_RS20920 at 4685.129 kb on + strand, within HER17_RS20920 at 4685.129 kb on + strand, within HER17_RS20920 at 4685.130 kb on - strand, within HER17_RS20920 at 4685.130 kb on - strand, within HER17_RS20920 at 4685.174 kb on + strand, within HER17_RS20920 at 4685.174 kb on + strand, within HER17_RS20920 at 4685.175 kb on - strand, within HER17_RS20920 at 4685.182 kb on - strand, within HER17_RS20920 at 4685.182 kb on - strand, within HER17_RS20920 at 4685.246 kb on + strand, within HER17_RS20920 at 4685.339 kb on + strand at 4685.369 kb on - strand, within HER17_RS22020 at 4685.372 kb on + strand, within HER17_RS22020 at 4685.372 kb on + strand, within HER17_RS22020 at 4685.372 kb on + strand, within HER17_RS22020 at 4685.372 kb on + strand, within HER17_RS22020 at 4685.373 kb on - strand, within HER17_RS22020 at 4685.373 kb on - strand, within HER17_RS22020 at 4685.373 kb on - strand, within HER17_RS22020 at 4685.373 kb on - strand, within HER17_RS22020 at 4685.385 kb on - strand, within HER17_RS22020 at 4685.452 kb on + strand, within HER17_RS22020 at 4685.452 kb on + strand, within HER17_RS22020 at 4685.452 kb on + strand, within HER17_RS22020 at 4685.452 kb on + strand, within HER17_RS22020 at 4685.453 kb on - strand, within HER17_RS22020 at 4685.453 kb on - strand, within HER17_RS22020 at 4685.453 kb on - strand, within HER17_RS22020 at 4685.453 kb on - strand, within HER17_RS22020 at 4685.457 kb on + strand, within HER17_RS22020 at 4685.457 kb on + strand, within HER17_RS22020 at 4685.457 kb on + strand, within HER17_RS22020 at 4685.457 kb on + strand, within HER17_RS22020 at 4685.458 kb on - strand, within HER17_RS22020 at 4685.458 kb on - strand, within HER17_RS22020 at 4685.486 kb on + strand, within HER17_RS22020 at 4685.487 kb on - strand, within HER17_RS22020 at 4685.581 kb on - strand, within HER17_RS22020 at 4685.593 kb on + strand, within HER17_RS22020 at 4685.594 kb on - strand, within HER17_RS22020 at 4685.594 kb on - strand, within HER17_RS22020 at 4685.622 kb on + strand at 4685.622 kb on + strand at 4685.622 kb on + strand at 4685.633 kb on + strand at 4685.633 kb on + strand at 4685.634 kb on - strand at 4685.640 kb on + strand at 4685.640 kb on + strand at 4685.641 kb on - strand at 4685.647 kb on + strand at 4685.653 kb on + strand at 4685.654 kb on - strand at 4685.657 kb on + strand at 4685.658 kb on - strand at 4685.720 kb on - strand, within HER17_RS20925 at 4685.720 kb on - strand, within HER17_RS20925 at 4685.720 kb on - strand, within HER17_RS20925 at 4685.720 kb on - strand, within HER17_RS20925 at 4685.723 kb on - strand, within HER17_RS20925 at 4685.723 kb on - strand, within HER17_RS20925 at 4685.723 kb on - strand, within HER17_RS20925 at 4685.723 kb on - strand, within HER17_RS20925 at 4685.757 kb on - strand, within HER17_RS20925 at 4685.850 kb on - strand, within HER17_RS20925 at 4685.959 kb on - strand, within HER17_RS20930 at 4685.995 kb on + strand, within HER17_RS20930 at 4685.995 kb on + strand, within HER17_RS20930 at 4686.016 kb on + strand, within HER17_RS20930 at 4686.017 kb on - strand, within HER17_RS20930 at 4686.024 kb on - strand, within HER17_RS20930 at 4686.094 kb on + strand, within HER17_RS20930 at 4686.095 kb on - strand, within HER17_RS20930 at 4686.095 kb on - strand, within HER17_RS20930 at 4686.107 kb on - strand, within HER17_RS20930 at 4686.107 kb on - strand, within HER17_RS20930 at 4686.142 kb on - strand, within HER17_RS20930 at 4686.144 kb on - strand, within HER17_RS20930 at 4686.148 kb on + strand, within HER17_RS20930 at 4686.235 kb on - strand, within HER17_RS20930 at 4686.274 kb on + strand at 4686.274 kb on + strand at 4686.300 kb on + strand at 4686.331 kb on - strand at 4686.352 kb on - strand at 4686.383 kb on + strand at 4686.452 kb on + strand at 4686.480 kb on + strand at 4686.481 kb on - strand at 4686.483 kb on + strand at 4686.484 kb on - strand at 4686.484 kb on - strand at 4686.497 kb on + strand at 4686.497 kb on + strand at 4686.541 kb on + strand at 4686.541 kb on + strand at 4686.542 kb on - strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.543 kb on + strand at 4686.544 kb on - strand at 4686.544 kb on - strand at 4686.544 kb on - strand at 4686.549 kb on + strand at 4686.549 kb on + strand at 4686.549 kb on + strand at 4686.549 kb on + strand at 4686.549 kb on + strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.550 kb on - strand at 4686.560 kb on - strand at 4686.560 kb on - strand at 4686.561 kb on + strand at 4686.567 kb on - strand at 4686.602 kb on + strand at 4686.602 kb on + strand at 4686.602 kb on + strand at 4686.605 kb on + strand at 4686.605 kb on + strand at 4686.606 kb on - strand at 4686.611 kb on + strand at 4686.612 kb on - strand at 4686.617 kb on + strand at 4686.645 kb on - strand at 4686.655 kb on + strand at 4686.710 kb on - strand, within HER17_RS20935 at 4686.710 kb on - strand, within HER17_RS20935 at 4686.723 kb on + strand, within HER17_RS20935 at 4686.726 kb on + strand, within HER17_RS20935 at 4686.765 kb on + strand, within HER17_RS20935 at 4686.766 kb on - strand, within HER17_RS20935 at 4686.766 kb on - strand, within HER17_RS20935 at 4686.766 kb on - strand, within HER17_RS20935 at 4686.766 kb on - strand, within HER17_RS20935 at 4686.826 kb on - strand, within HER17_RS20935 at 4686.834 kb on + strand, within HER17_RS20935 at 4686.834 kb on + strand, within HER17_RS20935 at 4686.834 kb on + strand, within HER17_RS20935 at 4686.835 kb on - strand, within HER17_RS20935 at 4686.835 kb on - strand, within HER17_RS20935 at 4686.835 kb on - strand, within HER17_RS20935 at 4686.843 kb on + strand, within HER17_RS20935 at 4686.843 kb on + strand, within HER17_RS20935 at 4686.843 kb on + strand, within HER17_RS20935 at 4686.844 kb on - strand, within HER17_RS20935 at 4686.844 kb on - strand, within HER17_RS20935 at 4686.844 kb on - strand, within HER17_RS20935 at 4686.844 kb on - strand, within HER17_RS20935 at 4686.938 kb on - strand, within HER17_RS20935 at 4686.974 kb on + strand, within HER17_RS20935 at 4686.979 kb on + strand, within HER17_RS20935 at 4686.997 kb on - strand, within HER17_RS20935 at 4687.125 kb on - strand, within HER17_RS20935 at 4687.163 kb on - strand, within HER17_RS20935 at 4687.240 kb on + strand, within HER17_RS20935 at 4687.260 kb on + strand, within HER17_RS20935 at 4687.261 kb on - strand, within HER17_RS20935 at 4687.261 kb on - strand, within HER17_RS20935
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 4,684,918 - HER17_RS20920 0.49 -1.3 4,684,949 + HER17_RS20920 0.53 -3.0 4,684,988 + HER17_RS20920 0.58 +0.8 4,684,989 - HER17_RS20920 0.58 +0.5 4,684,989 - HER17_RS20920 0.58 +0.4 4,685,028 - HER17_RS20920 0.63 +0.9 4,685,029 + HER17_RS20920 0.63 +0.5 4,685,029 + HER17_RS20920 0.63 -1.1 4,685,030 - HER17_RS20920 0.63 -0.9 4,685,030 - HER17_RS20920 0.63 -1.3 4,685,124 + HER17_RS20920 0.74 -2.4 4,685,124 + HER17_RS20920 0.74 +0.5 4,685,125 - HER17_RS20920 0.75 +0.5 4,685,129 + HER17_RS20920 0.75 -0.2 4,685,129 + HER17_RS20920 0.75 -0.4 4,685,129 + HER17_RS20920 0.75 +1.3 4,685,130 - HER17_RS20920 0.75 -0.6 4,685,130 - HER17_RS20920 0.75 +0.3 4,685,174 + HER17_RS20920 0.80 +0.1 4,685,174 + HER17_RS20920 0.80 +2.0 4,685,175 - HER17_RS20920 0.81 -0.3 4,685,182 - HER17_RS20920 0.81 +0.8 4,685,182 - HER17_RS20920 0.81 -0.5 4,685,246 + HER17_RS20920 0.89 -0.0 4,685,339 + +1.0 4,685,369 - HER17_RS22020 0.10 -0.9 4,685,372 + HER17_RS22020 0.11 +2.8 4,685,372 + HER17_RS22020 0.11 -0.9 4,685,372 + HER17_RS22020 0.11 -1.1 4,685,372 + HER17_RS22020 0.11 +0.5 4,685,373 - HER17_RS22020 0.12 +0.4 4,685,373 - HER17_RS22020 0.12 -0.1 4,685,373 - HER17_RS22020 0.12 -0.6 4,685,373 - HER17_RS22020 0.12 -1.0 4,685,385 - HER17_RS22020 0.16 +0.8 4,685,452 + HER17_RS22020 0.39 -0.5 4,685,452 + HER17_RS22020 0.39 +0.1 4,685,452 + HER17_RS22020 0.39 +0.9 4,685,452 + HER17_RS22020 0.39 +0.7 4,685,453 - HER17_RS22020 0.40 -0.5 4,685,453 - HER17_RS22020 0.40 +0.6 4,685,453 - HER17_RS22020 0.40 -0.6 4,685,453 - HER17_RS22020 0.40 +0.3 4,685,457 + HER17_RS22020 0.41 +0.6 4,685,457 + HER17_RS22020 0.41 +0.3 4,685,457 + HER17_RS22020 0.41 -2.9 4,685,457 + HER17_RS22020 0.41 -1.6 4,685,458 - HER17_RS22020 0.41 +0.7 4,685,458 - HER17_RS22020 0.41 -0.2 4,685,486 + HER17_RS22020 0.51 -1.3 4,685,487 - HER17_RS22020 0.52 -1.3 4,685,581 - HER17_RS22020 0.85 +1.0 4,685,593 + HER17_RS22020 0.89 +0.8 4,685,594 - HER17_RS22020 0.89 +0.4 4,685,594 - HER17_RS22020 0.89 +0.9 4,685,622 + -1.4 4,685,622 + +0.1 4,685,622 + -1.4 4,685,633 + +1.3 4,685,633 + +0.1 4,685,634 - -0.9 4,685,640 + -1.3 4,685,640 + -0.8 4,685,641 - -1.1 4,685,647 + +0.6 4,685,653 + -0.4 4,685,654 - -1.5 4,685,657 + +0.4 4,685,658 - -2.7 4,685,720 - HER17_RS20925 0.21 +0.7 4,685,720 - HER17_RS20925 0.21 -1.4 4,685,720 - HER17_RS20925 0.21 +0.4 4,685,720 - HER17_RS20925 0.21 -3.2 4,685,723 - HER17_RS20925 0.23 -2.5 4,685,723 - HER17_RS20925 0.23 +1.4 4,685,723 - HER17_RS20925 0.23 -4.2 4,685,723 - HER17_RS20925 0.23 +1.0 4,685,757 - HER17_RS20925 0.38 +1.0 4,685,850 - HER17_RS20925 0.80 +0.3 4,685,959 - HER17_RS20930 0.17 -0.2 4,685,995 + HER17_RS20930 0.27 +1.1 4,685,995 + HER17_RS20930 0.27 +0.0 4,686,016 + HER17_RS20930 0.32 +3.2 4,686,017 - HER17_RS20930 0.32 +0.7 4,686,024 - HER17_RS20930 0.34 +0.5 4,686,094 + HER17_RS20930 0.52 +1.4 4,686,095 - HER17_RS20930 0.52 +0.8 4,686,095 - HER17_RS20930 0.52 -0.1 4,686,107 - HER17_RS20930 0.55 +1.4 4,686,107 - HER17_RS20930 0.55 -0.6 4,686,142 - HER17_RS20930 0.64 -1.8 4,686,144 - HER17_RS20930 0.65 -0.9 4,686,148 + HER17_RS20930 0.66 -0.8 4,686,235 - HER17_RS20930 0.88 -0.9 4,686,274 + -1.9 4,686,274 + +0.8 4,686,300 + -2.5 4,686,331 - +0.0 4,686,352 - -0.5 4,686,383 + +1.4 4,686,452 + +0.3 4,686,480 + -0.1 4,686,481 - +2.1 4,686,483 + +0.7 4,686,484 - +1.9 4,686,484 - +0.9 4,686,497 + -1.2 4,686,497 + +1.2 4,686,541 + -0.3 4,686,541 + +1.4 4,686,542 - +0.2 4,686,543 + +0.0 4,686,543 + +0.0 4,686,543 + -0.2 4,686,543 + -0.3 4,686,543 + +0.2 4,686,543 + -0.4 4,686,543 + -0.4 4,686,543 + +0.7 4,686,543 + -0.5 4,686,544 - +1.3 4,686,544 - +0.5 4,686,544 - -2.7 4,686,549 + +0.6 4,686,549 + -0.9 4,686,549 + -1.2 4,686,549 + +1.0 4,686,549 + -0.2 4,686,550 - +0.1 4,686,550 - -0.5 4,686,550 - +0.5 4,686,550 - -0.5 4,686,550 - -1.7 4,686,550 - -0.9 4,686,550 - +0.7 4,686,550 - +0.8 4,686,560 - -1.3 4,686,560 - +1.2 4,686,561 + +0.6 4,686,567 - -0.3 4,686,602 + -0.3 4,686,602 + -2.6 4,686,602 + -1.6 4,686,605 + -1.4 4,686,605 + -0.8 4,686,606 - +0.7 4,686,611 + +1.6 4,686,612 - -0.6 4,686,617 + -0.2 4,686,645 - -1.7 4,686,655 + +0.2 4,686,710 - HER17_RS20935 0.11 +1.1 4,686,710 - HER17_RS20935 0.11 -1.0 4,686,723 + HER17_RS20935 0.13 -3.8 4,686,726 + HER17_RS20935 0.13 +0.4 4,686,765 + HER17_RS20935 0.18 +0.3 4,686,766 - HER17_RS20935 0.18 +1.1 4,686,766 - HER17_RS20935 0.18 -0.3 4,686,766 - HER17_RS20935 0.18 +0.0 4,686,766 - HER17_RS20935 0.18 -0.2 4,686,826 - HER17_RS20935 0.26 +0.9 4,686,834 + HER17_RS20935 0.27 -2.1 4,686,834 + HER17_RS20935 0.27 -2.4 4,686,834 + HER17_RS20935 0.27 +0.9 4,686,835 - HER17_RS20935 0.27 -0.8 4,686,835 - HER17_RS20935 0.27 +0.0 4,686,835 - HER17_RS20935 0.27 -0.4 4,686,843 + HER17_RS20935 0.28 +2.1 4,686,843 + HER17_RS20935 0.28 -0.5 4,686,843 + HER17_RS20935 0.28 +0.0 4,686,844 - HER17_RS20935 0.28 +0.9 4,686,844 - HER17_RS20935 0.28 -0.3 4,686,844 - HER17_RS20935 0.28 -0.0 4,686,844 - HER17_RS20935 0.28 -1.0 4,686,938 - HER17_RS20935 0.40 +0.6 4,686,974 + HER17_RS20935 0.44 +0.1 4,686,979 + HER17_RS20935 0.45 -1.5 4,686,997 - HER17_RS20935 0.47 -2.0 4,687,125 - HER17_RS20935 0.63 +1.2 4,687,163 - HER17_RS20935 0.68 +0.5 4,687,240 + HER17_RS20935 0.78 +0.3 4,687,260 + HER17_RS20935 0.80 +0.0 4,687,261 - HER17_RS20935 0.80 +0.0 4,687,261 - HER17_RS20935 0.80 +0.3
Or see this region's nucleotide sequence