Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19955

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
4,482,773	-				-1.4
4,482,863	+		HER17_RS19950	0.10	-0.5
4,482,863	+		HER17_RS19950	0.10	-0.1
4,482,900	+		HER17_RS19950	0.15	-0.5
4,482,901	-		HER17_RS19950	0.15	-0.7
4,482,904	+		HER17_RS19950	0.15	+1.5
4,482,905	-		HER17_RS19950	0.16	-0.4
4,482,962	+		HER17_RS19950	0.23	+1.1
4,482,963	-		HER17_RS19950	0.23	+0.3
4,482,965	-		HER17_RS19950	0.23	+0.3
4,482,978	-		HER17_RS19950	0.25	+0.4
4,483,044	+		HER17_RS19950	0.33	-2.5
4,483,066	+		HER17_RS19950	0.36	+0.3
4,483,111	-		HER17_RS19950	0.42	-0.1
4,483,189	-		HER17_RS19950	0.52	+0.9
4,483,213	+		HER17_RS19950	0.55	+0.7
4,483,219	+		HER17_RS19950	0.56	-0.6
4,483,252	+		HER17_RS19950	0.60	+0.1
4,483,267	+		HER17_RS19950	0.62	-0.2
4,483,267	+		HER17_RS19950	0.62	+1.3
4,483,267	+		HER17_RS19950	0.62	-2.1
4,483,268	-		HER17_RS19950	0.62	-0.6
4,483,277	-		HER17_RS19950	0.64	-2.3
4,483,328	+		HER17_RS19950	0.70	+1.1
4,483,329	-		HER17_RS19950	0.70	-0.4
4,483,329	-		HER17_RS19950	0.70	+0.1
4,483,329	-		HER17_RS19950	0.70	+3.1
4,483,329	-		HER17_RS19950	0.70	-0.9
4,483,329	-		HER17_RS19950	0.70	+0.8
4,483,329	-		HER17_RS19950	0.70	+0.2
4,483,330	+		HER17_RS19950	0.70	+0.8
4,483,330	+		HER17_RS19950	0.70	+0.1
4,483,331	-		HER17_RS19950	0.71	-0.5
4,483,361	+		HER17_RS19950	0.74	+0.5
4,483,366	-		HER17_RS19950	0.75	-0.4
4,483,411	+		HER17_RS19950	0.81	+1.7
4,483,412	-		HER17_RS19950	0.81	-1.3
4,483,427	-		HER17_RS19950	0.83	-3.2
4,483,505	+				-0.1
4,483,505	+				+0.6
4,483,506	-				+0.0
4,483,506	-				-0.8
4,483,507	+				+1.7
4,483,526	+				+0.5
4,483,526	+				+0.9
4,483,527	-				+0.8
4,483,527	-				-0.1
4,483,527	-				+0.9
4,483,593	+				-1.7
4,483,646	+				-1.4
4,483,647	-				+0.5
4,483,647	-				-0.3
4,483,647	-				-0.2
4,483,647	-				-0.3
4,483,649	-				-2.5
4,483,649	-				-0.4
4,483,649	-				+1.5
4,483,663	-				+0.8
4,483,663	-				+0.0
4,483,681	-				+0.9
4,483,702	-				-2.3
4,483,702	-				+1.6
4,483,750	+				-0.2
4,483,806	+		HER17_RS19955	0.13	-0.0
4,483,817	-		HER17_RS19955	0.14	+0.2
4,483,857	+		HER17_RS19955	0.18	-0.7
4,483,857	+		HER17_RS19955	0.18	+2.3
4,483,866	-		HER17_RS19955	0.19	+1.3
4,483,866	-		HER17_RS19955	0.19	-0.6
4,483,968	+		HER17_RS19955	0.29	-2.2
4,483,968	+		HER17_RS19955	0.29	-1.5
4,483,968	+		HER17_RS19955	0.29	+0.2
4,483,969	-		HER17_RS19955	0.29	-2.1
4,483,969	-		HER17_RS19955	0.29	-1.8
4,483,969	-		HER17_RS19955	0.29	-0.3
4,483,972	+		HER17_RS19955	0.29	+0.5
4,484,007	+		HER17_RS19955	0.32	+0.5
4,484,045	+		HER17_RS19955	0.36	+0.1
4,484,045	+		HER17_RS19955	0.36	+0.7
4,484,045	+		HER17_RS19955	0.36	+0.9
4,484,045	+		HER17_RS19955	0.36	-0.1
4,484,046	-		HER17_RS19955	0.36	+1.3
4,484,046	-		HER17_RS19955	0.36	+0.3
4,484,065	+		HER17_RS19955	0.38	+1.2
4,484,065	+		HER17_RS19955	0.38	+1.3
4,484,065	+		HER17_RS19955	0.38	-0.2
4,484,065	+		HER17_RS19955	0.38	-1.5
4,484,065	+		HER17_RS19955	0.38	+0.8
4,484,066	-		HER17_RS19955	0.38	-0.0
4,484,098	+		HER17_RS19955	0.41	+0.5
4,484,098	+		HER17_RS19955	0.41	+0.4
4,484,099	-		HER17_RS19955	0.41	-0.9
4,484,124	+		HER17_RS19955	0.43	-0.2
4,484,125	-		HER17_RS19955	0.44	-0.1
4,484,125	-		HER17_RS19955	0.44	+0.3
4,484,125	-		HER17_RS19955	0.44	+0.6
4,484,155	-		HER17_RS19955	0.46	-0.4
4,484,368	+		HER17_RS19955	0.67	+0.0
4,484,368	+		HER17_RS19955	0.67	-0.7
4,484,369	-		HER17_RS19955	0.67	-1.5
4,484,369	-		HER17_RS19955	0.67	+0.6
4,484,379	+		HER17_RS19955	0.68	+0.4
4,484,380	-		HER17_RS19955	0.68	-1.2
4,484,386	+		HER17_RS19955	0.68	+0.5
4,484,472	-		HER17_RS19955	0.77	+0.4
4,484,522	+		HER17_RS19955	0.81	+0.5
4,484,523	-		HER17_RS19955	0.82	+0.3
4,484,525	+		HER17_RS19955	0.82	-0.9
4,484,526	-		HER17_RS19955	0.82	+0.1
4,484,563	-		HER17_RS19955	0.85	+0.3
4,484,604	+		HER17_RS19955	0.89	-0.3
4,484,604	+		HER17_RS19955	0.89	+0.3
4,484,606	+		HER17_RS19955	0.89	+0.2
4,484,772	+				-0.5
4,484,912	-				-0.4
4,484,917	+				+1.4
4,484,929	-				-0.6
4,485,011	+				-0.6
4,485,011	+				+0.6
4,485,012	-				+1.3
4,485,035	-				-1.3
4,485,093	+		HER17_RS19960	0.12	-1.3
4,485,094	-		HER17_RS19960	0.12	+0.8
4,485,101	+		HER17_RS19960	0.13	-2.3
4,485,102	-		HER17_RS19960	0.13	+0.5
4,485,102	-		HER17_RS19960	0.13	-1.3
4,485,133	+		HER17_RS19960	0.15	+0.6
4,485,134	-		HER17_RS19960	0.15	-0.7
4,485,134	-		HER17_RS19960	0.15	-0.0
4,485,144	+		HER17_RS19960	0.16	+1.1
4,485,145	-		HER17_RS19960	0.16	-0.7
4,485,207	+		HER17_RS19960	0.21	-0.8
4,485,221	+		HER17_RS19960	0.22	+0.9
4,485,222	-		HER17_RS19960	0.22	+0.6
4,485,234	+		HER17_RS19960	0.23	-0.6
4,485,234	+		HER17_RS19960	0.23	-0.4
4,485,234	+		HER17_RS19960	0.23	+0.2
4,485,242	+		HER17_RS19960	0.24	-0.4
4,485,242	+		HER17_RS19960	0.24	+0.3
4,485,242	+		HER17_RS19960	0.24	-0.1
4,485,243	-		HER17_RS19960	0.24	+1.3
4,485,243	-		HER17_RS19960	0.24	+0.3
4,485,243	-		HER17_RS19960	0.24	-0.2
4,485,243	-		HER17_RS19960	0.24	+1.0
4,485,245	+		HER17_RS19960	0.24	-1.3
4,485,245	+		HER17_RS19960	0.24	-0.0
4,485,245	+		HER17_RS19960	0.24	+0.4
4,485,245	+		HER17_RS19960	0.24	-1.2
4,485,245	+		HER17_RS19960	0.24	-0.7
4,485,246	-		HER17_RS19960	0.24	-1.1
4,485,246	-		HER17_RS19960	0.24	+0.7
4,485,246	-		HER17_RS19960	0.24	-1.8
4,485,246	-		HER17_RS19960	0.24	-0.2
4,485,246	-		HER17_RS19960	0.24	+0.7
4,485,293	+		HER17_RS19960	0.27	-0.4
4,485,354	+		HER17_RS19960	0.32	+0.4
4,485,354	+		HER17_RS19960	0.32	-1.2
4,485,370	+		HER17_RS19960	0.33	-2.7
4,485,371	-		HER17_RS19960	0.33	-1.5
4,485,371	-		HER17_RS19960	0.33	-0.7
4,485,371	-		HER17_RS19960	0.33	+0.1
4,485,378	+		HER17_RS19960	0.34	+0.2
4,485,378	+		HER17_RS19960	0.34	+0.2
4,485,379	-		HER17_RS19960	0.34	+0.7
4,485,379	-		HER17_RS19960	0.34	+1.5
4,485,379	-		HER17_RS19960	0.34	+0.1
4,485,379	-		HER17_RS19960	0.34	+0.8
4,485,469	+		HER17_RS19960	0.41	+0.9
4,485,477	+		HER17_RS19960	0.41	-0.3
4,485,584	+		HER17_RS19960	0.49	+0.1
4,485,596	+		HER17_RS19960	0.50	+0.1