Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16505

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,720,894	+		HER17_RS16500	0.41	-0.7
3,720,895	-		HER17_RS16500	0.42	+0.7
3,720,895	-		HER17_RS16500	0.42	+0.0
3,720,914	+		HER17_RS16500	0.43	+0.3
3,720,916	+		HER17_RS16500	0.43	+0.5
3,720,916	+		HER17_RS16500	0.43	+0.6
3,720,916	+		HER17_RS16500	0.43	+0.4
3,720,916	+		HER17_RS16500	0.43	-0.3
3,720,916	+		HER17_RS16500	0.43	+0.6
3,720,917	-		HER17_RS16500	0.43	-0.6
3,720,917	-		HER17_RS16500	0.43	-0.5
3,720,999	-		HER17_RS16500	0.50	+0.2
3,721,109	+		HER17_RS16500	0.59	-0.9
3,721,109	+		HER17_RS16500	0.59	-0.8
3,721,109	+		HER17_RS16500	0.59	-0.8
3,721,109	+		HER17_RS16500	0.59	-1.6
3,721,110	-		HER17_RS16500	0.59	+0.2
3,721,132	+		HER17_RS16500	0.61	+0.7
3,721,133	-		HER17_RS16500	0.61	+0.1
3,721,133	-		HER17_RS16500	0.61	+1.0
3,721,133	-		HER17_RS16500	0.61	+0.9
3,721,174	+		HER17_RS16500	0.64	+1.2
3,721,192	+		HER17_RS16500	0.65	-0.6
3,721,192	+		HER17_RS16500	0.65	+1.2
3,721,241	+		HER17_RS16500	0.69	+1.3
3,721,325	+		HER17_RS16500	0.76	+0.3
3,721,325	+		HER17_RS16500	0.76	-0.5
3,721,326	-		HER17_RS16500	0.76	+0.2
3,721,424	+		HER17_RS16500	0.84	+1.6
3,721,425	-		HER17_RS16500	0.84	-0.3
3,721,433	+		HER17_RS16500	0.85	+0.7
3,721,442	+		HER17_RS16500	0.85	-0.5
3,721,444	+		HER17_RS16500	0.86	+0.7
3,721,444	+		HER17_RS16500	0.86	+0.7
3,721,444	+		HER17_RS16500	0.86	-0.5
3,721,445	-		HER17_RS16500	0.86	-2.4
3,721,445	-		HER17_RS16500	0.86	+1.2
3,721,484	-		HER17_RS16500	0.89	+0.0
3,721,539	+				-1.2
3,721,540	-				+2.5
3,721,549	-				+0.9
3,721,555	-				-2.0
3,721,555	-				-0.1
3,721,555	-				+0.8
3,721,682	+				-0.2
3,721,683	-				-1.4
3,721,683	-				+1.0
3,721,691	-				+0.2
3,721,772	+				+0.0
3,721,772	+				-1.6
3,721,772	+				+0.9
3,721,772	+				-1.7
3,721,773	-				-1.1
3,721,773	-				-0.2
3,721,773	-				-1.0
3,721,773	-				-0.8
3,721,773	-				-0.1
3,721,773	-				+1.5
3,721,773	-				-1.5
3,721,773	-				+0.4
3,721,773	-				-1.7
3,721,773	-				-2.4
3,721,773	-				+1.4
3,721,804	+				+1.8
3,721,805	-				+1.2
3,721,818	-				-0.8
3,721,826	+				-0.2
3,721,826	+				+1.5
3,721,826	+				+0.5
3,721,826	+				-1.5
3,721,827	-				-0.6
3,721,827	-				+0.6
3,721,827	-				-1.6
3,721,827	-				+0.4
3,721,827	-				-0.2
3,721,952	+				+1.7
3,721,952	+				-0.3
3,721,954	+				-2.3
3,721,992	+				-1.0
3,721,993	-				+0.9
3,721,993	-				-0.1
3,722,026	+		HER17_RS16505	0.11	+0.9
3,722,027	-		HER17_RS16505	0.11	-0.5
3,722,034	+		HER17_RS16505	0.11	-0.7
3,722,035	-		HER17_RS16505	0.11	-0.2
3,722,035	-		HER17_RS16505	0.11	+1.7
3,722,035	-		HER17_RS16505	0.11	-0.9
3,722,052	+		HER17_RS16505	0.13	+0.2
3,722,052	+		HER17_RS16505	0.13	-0.1
3,722,052	+		HER17_RS16505	0.13	+0.5
3,722,084	+		HER17_RS16505	0.15	+0.6
3,722,129	+		HER17_RS16505	0.18	-0.7
3,722,130	-		HER17_RS16505	0.18	-0.4
3,722,130	-		HER17_RS16505	0.18	-0.9
3,722,146	+		HER17_RS16505	0.20	+0.4
3,722,147	-		HER17_RS16505	0.20	+0.2
3,722,275	+		HER17_RS16505	0.29	+0.3
3,722,275	+		HER17_RS16505	0.29	+0.6
3,722,275	+		HER17_RS16505	0.29	+0.1
3,722,276	-		HER17_RS16505	0.29	-0.0
3,722,276	-		HER17_RS16505	0.29	+2.4
3,722,296	+		HER17_RS16505	0.31	+1.7
3,722,296	+		HER17_RS16505	0.31	-1.5
3,722,336	+		HER17_RS16505	0.34	-0.8
3,722,337	-		HER17_RS16505	0.34	-1.8
3,722,488	+		HER17_RS16505	0.45	-0.5
3,722,492	-		HER17_RS16505	0.45	+0.6
3,722,492	-		HER17_RS16505	0.45	+0.9
3,722,545	+		HER17_RS16505	0.49	-1.6
3,722,546	-		HER17_RS16505	0.49	+0.4
3,722,596	+		HER17_RS16505	0.53	+0.4
3,722,705	+		HER17_RS16505	0.61	+0.0
3,722,857	+		HER17_RS16505	0.72	+0.4
3,722,857	+		HER17_RS16505	0.72	+0.6
3,722,857	+		HER17_RS16505	0.72	+0.7
3,722,858	-		HER17_RS16505	0.73	+0.2
3,722,858	-		HER17_RS16505	0.73	+0.5
3,722,858	-		HER17_RS16505	0.73	-1.0
3,722,858	-		HER17_RS16505	0.73	+0.2
3,723,094	-				+0.2
3,723,182	+				+0.4
3,723,183	-				-1.8
3,723,188	+				-0.6
3,723,188	+				-0.1
3,723,189	-				-1.2
3,723,189	-				+0.3
3,723,217	-				-0.5
3,723,229	+				+0.5
3,723,230	-				-1.8
3,723,230	-				+0.2
3,723,291	+				+0.7
3,723,317	+				+0.2
3,723,317	+				+1.3
3,723,317	+				+0.1
3,723,318	-				-1.2
3,723,318	-				+0.5
3,723,318	-				+1.0
3,723,318	-				+1.6
3,723,318	-				-1.4
3,723,352	+				-1.0
3,723,352	+				+1.1
3,723,353	-				-2.4
3,723,353	-				+0.1
3,723,359	+				-0.4
3,723,398	+				-0.7
3,723,399	-				+0.3
3,723,399	-				-0.1
3,723,399	-				-1.3
3,723,404	+				+0.5
3,723,404	+				-0.2
3,723,405	-				-1.4
3,723,405	-				-0.6
3,723,405	-				-1.1
3,723,405	-				-0.1
3,723,405	-				-0.5
3,723,715	-		HER17_RS16510	0.36	-0.2
3,723,951	-		HER17_RS16510	0.55	+0.6
3,723,967	+		HER17_RS16510	0.57	+0.8
3,723,993	+		HER17_RS16510	0.59	-0.3
3,723,993	+		HER17_RS16510	0.59	+0.4
3,723,994	-		HER17_RS16510	0.59	-1.4
3,723,994	-		HER17_RS16510	0.59	+1.4
3,723,994	-		HER17_RS16510	0.59	+1.4
3,723,994	-		HER17_RS16510	0.59	-0.6
3,724,026	-		HER17_RS16510	0.61	+1.2
3,724,030	+		HER17_RS16510	0.62	-0.3
3,724,031	-		HER17_RS16510	0.62	+0.3
3,724,031	-		HER17_RS16510	0.62	-0.6
3,724,063	+		HER17_RS16510	0.65	+1.1
3,724,150	+		HER17_RS16510	0.72	-1.8
3,724,152	+		HER17_RS16510	0.72	+0.2
3,724,152	+		HER17_RS16510	0.72	-0.6
3,724,152	+		HER17_RS16510	0.72	-0.9
3,724,152	+		HER17_RS16510	0.72	+0.2
3,724,152	+		HER17_RS16510	0.72	+0.8
3,724,153	-		HER17_RS16510	0.72	-0.8
3,724,153	-		HER17_RS16510	0.72	-2.4
3,724,153	-		HER17_RS16510	0.72	+0.7
3,724,153	-		HER17_RS16510	0.72	-1.2
3,724,153	-		HER17_RS16510	0.72	-0.0
3,724,153	-		HER17_RS16510	0.72	+0.5
3,724,153	-		HER17_RS16510	0.72	-0.9
3,724,160	-		HER17_RS16510	0.73	+1.0
3,724,218	+		HER17_RS16510	0.78	+0.3
3,724,218	+		HER17_RS16510	0.78	-1.7
3,724,218	+		HER17_RS16510	0.78	-1.4
3,724,219	-		HER17_RS16510	0.78	-0.7
3,724,219	-		HER17_RS16510	0.78	+0.5