Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15750

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,540,125	+		HER17_RS15740	0.84	+0.9
3,540,126	-		HER17_RS15740	0.84	-1.0
3,540,153	+		HER17_RS15740	0.85	+0.3
3,540,153	+		HER17_RS15740	0.85	+1.9
3,540,153	+		HER17_RS15740	0.85	-0.2
3,540,153	+		HER17_RS15740	0.85	+0.1
3,540,154	-		HER17_RS15740	0.85	+1.5
3,540,154	-		HER17_RS15740	0.85	+0.8
3,540,154	-		HER17_RS15740	0.85	+1.3
3,540,170	+		HER17_RS15740	0.85	-1.1
3,540,234	+		HER17_RS15740	0.87	+0.6
3,540,247	+		HER17_RS15740	0.88	-0.1
3,540,247	+		HER17_RS15740	0.88	-0.3
3,540,247	+		HER17_RS15740	0.88	-0.7
3,540,272	+		HER17_RS15740	0.89	+0.2
3,540,300	+		HER17_RS15740	0.89	+1.4
3,540,344	-				+1.2
3,540,403	+				-0.0
3,540,403	+				-0.5
3,540,453	+				+0.3
3,540,472	+				-2.0
3,540,472	+				+0.4
3,540,516	+				-0.3
3,540,516	+				+0.9
3,540,532	+				+1.3
3,540,550	+				-0.4
3,540,626	+				+0.9
3,540,627	-				-1.3
3,540,644	+				+0.9
3,540,644	+				+0.0
3,540,644	+				-0.3
3,540,644	+				+0.7
3,540,644	+				-0.1
3,540,644	+				-0.5
3,540,645	-				-0.7
3,540,645	-				-1.6
3,540,645	-				+2.6
3,540,645	-				+3.3
3,540,645	-				-1.1
3,540,645	-				+2.1
3,540,645	-				-0.5
3,540,647	-				+1.3
3,540,653	+				+1.2
3,540,665	+				+1.0
3,540,731	+				+1.5
3,540,732	-				+1.3
3,540,732	-				+0.2
3,540,732	-				-1.7
3,540,732	-				-0.5
3,540,739	+				+0.8
3,540,739	+				+0.9
3,540,740	-				+0.4
3,540,740	-				-1.7
3,540,741	+				-0.8
3,540,742	-				+0.3
3,540,742	-				+0.6
3,540,742	-				+0.9
3,540,750	-				+1.0
3,540,777	+				+1.2
3,540,777	+				+1.0
3,540,777	+				+1.0
3,540,777	+				-0.7
3,540,777	+				+0.0
3,540,778	-				-1.2
3,540,778	-				+0.4
3,540,778	-				+0.5
3,540,847	-				-0.3
3,540,859	-				+0.1
3,540,897	+		HER17_RS15745	0.20	-1.0
3,540,910	+		HER17_RS15745	0.25	-1.0
3,540,945	+		HER17_RS15745	0.39	+1.0
3,540,946	-		HER17_RS15745	0.40	-0.8
3,540,956	+		HER17_RS15745	0.44	-0.2
3,540,977	-		HER17_RS15745	0.52	+0.1
3,540,977	-		HER17_RS15745	0.52	-0.1
3,540,977	-		HER17_RS15745	0.52	-0.8
3,540,977	-		HER17_RS15745	0.52	+0.5
3,540,977	-		HER17_RS15745	0.52	+0.2
3,541,013	-		HER17_RS15745	0.67	-1.4
3,541,015	+		HER17_RS15745	0.67	+0.7
3,541,015	+		HER17_RS15745	0.67	+1.1
3,541,016	-		HER17_RS15745	0.68	-1.9
3,541,017	+		HER17_RS15745	0.68	-0.5
3,541,036	+		HER17_RS15745	0.76	-0.7
3,541,109	+				+1.2
3,541,124	+				+0.1
3,541,124	+				-1.9
3,541,125	-				-2.4
3,541,132	+		HER17_RS15750	0.13	+0.3
3,541,133	-		HER17_RS15750	0.14	+0.4
3,541,163	+		HER17_RS15750	0.35	-1.0
3,541,164	-		HER17_RS15750	0.35	+0.7
3,541,164	-		HER17_RS15750	0.35	+0.5
3,541,164	-		HER17_RS15750	0.35	-0.1
3,541,164	-		HER17_RS15750	0.35	+1.0
3,541,191	+		HER17_RS15750	0.54	-0.2
3,541,191	+		HER17_RS15750	0.54	+0.9
3,541,191	+		HER17_RS15750	0.54	-0.2
3,541,192	-		HER17_RS15750	0.55	+0.3
3,541,196	+		HER17_RS15750	0.58	-0.1
3,541,196	+		HER17_RS15750	0.58	-1.4
3,541,197	-		HER17_RS15750	0.58	+1.1
3,541,198	+		HER17_RS15750	0.59	-2.3
3,541,199	-		HER17_RS15750	0.60	+0.3
3,541,199	-		HER17_RS15750	0.60	-0.4
3,541,199	-		HER17_RS15750	0.60	+0.7
3,541,199	-		HER17_RS15750	0.60	+0.1
3,541,229	-		HER17_RS15750	0.81	-3.4
3,541,351	-				-1.9
3,541,429	+				+0.3
3,541,430	-				+1.5
3,541,459	+				+1.4
3,541,459	+				+0.2
3,541,460	-				+0.2
3,541,460	-				-0.0
3,541,460	-				-1.3
3,541,502	+				-3.5
3,541,507	-				+0.5
3,541,507	-				-0.7
3,541,521	+				+0.3
3,541,525	+				+0.6
3,541,525	+				-0.4
3,541,558	+				-0.1
3,541,564	+				+0.8
3,541,564	+				-0.1
3,541,564	+				-1.2
3,541,564	+				+1.3
3,541,565	-				-1.9
3,541,566	+				-0.6
3,541,566	+				-1.5
3,541,566	+				+1.6
3,541,566	+				-0.8
3,541,568	+				+0.0
3,541,569	-				-1.5
3,541,569	-				-0.2
3,541,596	+				-0.9
3,541,602	+				+0.1
3,541,603	-				-0.7
3,541,604	+				-0.5
3,541,604	+				-0.2
3,541,608	+				-0.9
3,541,609	-				-0.9
3,541,609	-				+1.3
3,541,615	-				+0.9
3,541,624	+				-0.1
3,541,624	+				-2.0
3,541,625	-				-1.7
3,541,625	-				-0.4
3,541,632	+				-1.7
3,541,633	-				-0.3
3,541,633	-				-0.2
3,541,636	+				-2.7
3,541,647	+				-1.8
3,541,659	+				-2.7
3,541,659	+				-0.4
3,541,659	+				-1.9
3,541,662	+				-0.5
3,541,662	+				-0.3
3,541,663	-				-0.3
3,541,663	-				-0.5
3,541,670	-				-0.2
3,541,780	+				-0.9
3,541,796	-				+0.2
3,541,823	-				-0.7
3,541,856	-				-1.9
3,541,880	+				-1.2
3,541,881	-				-0.3
3,541,881	-				+0.2
3,541,886	-				-0.1
3,541,886	-				-0.6
3,541,998	+		HER17_RS15755	0.38	-1.3
3,541,998	+		HER17_RS15755	0.38	-1.6
3,541,999	-		HER17_RS15755	0.39	-0.1
3,542,017	+		HER17_RS15755	0.44	-3.5
3,542,030	-		HER17_RS15755	0.47	-0.7
3,542,101	+		HER17_RS15755	0.66	-0.4
3,542,101	+		HER17_RS15755	0.66	+1.3
3,542,101	+		HER17_RS15755	0.66	-1.3
3,542,105	+		HER17_RS15755	0.67	-3.1
3,542,105	+		HER17_RS15755	0.67	-0.8
3,542,106	-		HER17_RS15755	0.68	+0.5
3,542,106	-		HER17_RS15755	0.68	-0.8
3,542,106	-		HER17_RS15755	0.68	-1.8
3,542,124	-		HER17_RS15755	0.73	-1.4
3,542,124	-		HER17_RS15755	0.73	-0.5
3,542,145	+		HER17_RS15755	0.78	-0.9
3,542,146	-		HER17_RS15755	0.79	-0.0
3,542,206	+				-1.4