Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14225

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,195,258	-		HER17_RS14220	0.30	-1.5
3,195,295	+		HER17_RS14220	0.33	+0.7
3,195,296	-		HER17_RS14220	0.33	+0.1
3,195,370	+		HER17_RS14220	0.39	+1.9
3,195,371	-		HER17_RS14220	0.39	-1.5
3,195,371	-		HER17_RS14220	0.39	-1.9
3,195,371	-		HER17_RS14220	0.39	+0.3
3,195,371	-		HER17_RS14220	0.39	-0.8
3,195,371	-		HER17_RS14220	0.39	+0.3
3,195,450	+		HER17_RS14220	0.45	-1.5
3,195,450	+		HER17_RS14220	0.45	-0.4
3,195,451	-		HER17_RS14220	0.45	-0.8
3,195,470	+		HER17_RS14220	0.46	+0.6
3,195,528	+		HER17_RS14220	0.51	-1.0
3,195,528	+		HER17_RS14220	0.51	-0.1
3,195,528	+		HER17_RS14220	0.51	+0.2
3,195,558	+		HER17_RS14220	0.53	-2.5
3,195,558	+		HER17_RS14220	0.53	+0.5
3,195,603	+		HER17_RS14220	0.57	-1.2
3,195,604	-		HER17_RS14220	0.57	+0.4
3,195,629	+		HER17_RS14220	0.59	-0.1
3,195,629	+		HER17_RS14220	0.59	-3.3
3,195,630	-		HER17_RS14220	0.59	-1.7
3,195,794	+		HER17_RS14220	0.71	+0.6
3,195,794	+		HER17_RS14220	0.71	-2.8
3,195,794	+		HER17_RS14220	0.71	-0.9
3,195,794	+		HER17_RS14220	0.71	-1.7
3,195,794	+		HER17_RS14220	0.71	-1.5
3,195,794	+		HER17_RS14220	0.71	-1.8
3,195,794	+		HER17_RS14220	0.71	-0.5
3,195,795	-		HER17_RS14220	0.71	-0.9
3,195,795	-		HER17_RS14220	0.71	+1.1
3,195,795	-		HER17_RS14220	0.71	+1.1
3,195,795	-		HER17_RS14220	0.71	-0.5
3,195,795	-		HER17_RS14220	0.71	-0.4
3,195,795	-		HER17_RS14220	0.71	-1.2
3,195,795	-		HER17_RS14220	0.71	+0.9
3,195,801	+		HER17_RS14220	0.72	+0.5
3,195,801	+		HER17_RS14220	0.72	-0.7
3,195,801	+		HER17_RS14220	0.72	-2.6
3,195,801	+		HER17_RS14220	0.72	-2.5
3,195,802	-		HER17_RS14220	0.72	-0.2
3,195,802	-		HER17_RS14220	0.72	+0.6
3,195,802	-		HER17_RS14220	0.72	-1.9
3,195,802	-		HER17_RS14220	0.72	+0.1
3,195,802	-		HER17_RS14220	0.72	+0.3
3,195,837	+		HER17_RS14220	0.75	-0.2
3,195,838	-		HER17_RS14220	0.75	+0.4
3,195,838	-		HER17_RS14220	0.75	-2.1
3,195,838	-		HER17_RS14220	0.75	+0.1
3,196,025	+		HER17_RS14220	0.89	-0.7
3,196,034	+		HER17_RS14220	0.90	+0.6
3,196,034	+		HER17_RS14220	0.90	-1.7
3,196,034	+		HER17_RS14220	0.90	-0.2
3,196,034	+		HER17_RS14220	0.90	+0.1
3,196,035	-		HER17_RS14220	0.90	+0.3
3,196,052	+				+0.6
3,196,053	-				-0.4
3,196,053	-				-0.2
3,196,053	-				+1.0
3,196,053	-				-0.7
3,196,164	-				+0.1
3,196,164	-				+1.5
3,196,168	-				+0.1
3,196,168	-				+1.0
3,196,185	+				+0.5
3,196,185	+				+0.1
3,196,185	+				+0.7
3,196,185	+				+0.4
3,196,185	+				-0.7
3,196,186	-				-1.2
3,196,186	-				-0.5
3,196,186	-				-1.7
3,196,186	-				-0.2
3,196,186	-				-0.2
3,196,195	-				+1.1
3,196,195	-				-1.2
3,196,195	-				-1.2
3,196,215	-				+0.7
3,196,258	+				+0.6
3,196,291	+				-0.9
3,196,345	+				+1.1
3,196,423	+		HER17_RS14225	0.18	-1.6
3,196,463	+		HER17_RS14225	0.23	-0.1
3,196,464	-		HER17_RS14225	0.23	-1.0
3,196,526	+		HER17_RS14225	0.30	-1.7
3,196,526	+		HER17_RS14225	0.30	+0.4
3,196,526	+		HER17_RS14225	0.30	+0.1
3,196,526	+		HER17_RS14225	0.30	+0.4
3,196,530	+		HER17_RS14225	0.30	+0.2
3,196,558	+		HER17_RS14225	0.33	+0.1
3,196,559	-		HER17_RS14225	0.34	-0.6
3,196,574	-		HER17_RS14225	0.35	-1.4
3,196,581	+		HER17_RS14225	0.36	+0.2
3,196,666	-		HER17_RS14225	0.45	-0.2
3,196,707	-		HER17_RS14225	0.50	-1.4
3,196,708	+		HER17_RS14225	0.50	+1.2
3,196,708	+		HER17_RS14225	0.50	-2.8
3,196,709	-		HER17_RS14225	0.50	-2.4
3,196,709	-		HER17_RS14225	0.50	-0.0
3,196,783	+		HER17_RS14225	0.58	-1.5
3,196,818	+		HER17_RS14225	0.62	+0.8
3,196,819	-		HER17_RS14225	0.62	+1.1
3,196,875	-		HER17_RS14225	0.69	-0.9
3,196,875	-		HER17_RS14225	0.69	+0.3
3,196,875	-		HER17_RS14225	0.69	+0.6
3,196,875	-		HER17_RS14225	0.69	-0.5
3,196,883	-		HER17_RS14225	0.70	-0.5
3,196,904	+		HER17_RS14225	0.72	+0.2
3,196,905	-		HER17_RS14225	0.72	-1.0
3,196,916	-		HER17_RS14225	0.73	+2.5
3,196,945	+		HER17_RS14225	0.76	+1.8
3,196,946	-		HER17_RS14225	0.77	+1.0
3,196,946	-		HER17_RS14225	0.77	-2.3
3,196,975	-		HER17_RS14225	0.80	+0.6
3,197,064	+		HER17_RS14225	0.90	-0.5
3,197,065	-		HER17_RS14225	0.90	-0.7
3,197,118	-				-0.2
3,197,145	-				+0.0
3,197,147	+				-0.1
3,197,198	+				-0.5
3,197,199	-				-1.2
3,197,199	-				+1.5
3,197,240	+				+0.9
3,197,240	+				+0.9
3,197,240	+				+1.2
3,197,241	-				-0.2
3,197,484	-		HER17_RS14230	0.15	-0.1
3,197,484	-		HER17_RS14230	0.15	+0.6
3,197,504	+		HER17_RS14230	0.17	-2.2
3,197,565	-		HER17_RS14230	0.26	+0.1
3,197,577	+		HER17_RS14230	0.28	-2.9
3,197,578	-		HER17_RS14230	0.28	-0.5
3,197,578	-		HER17_RS14230	0.28	-2.6
3,197,587	+		HER17_RS14230	0.29	+0.6
3,197,641	-		HER17_RS14230	0.37	-1.4
3,197,641	-		HER17_RS14230	0.37	+0.3
3,197,648	+		HER17_RS14230	0.38	-2.2
3,197,649	-		HER17_RS14230	0.38	+0.7
3,197,649	-		HER17_RS14230	0.38	-1.1
3,197,649	-		HER17_RS14230	0.38	-1.2
3,197,656	+		HER17_RS14230	0.39	+0.1
3,197,657	-		HER17_RS14230	0.39	-0.3
3,197,690	+		HER17_RS14230	0.43	+0.4
3,197,691	-		HER17_RS14230	0.44	-2.4
3,197,714	+		HER17_RS14230	0.47	-0.1
3,197,804	+		HER17_RS14230	0.59	+1.0
3,197,805	-		HER17_RS14230	0.59	-0.8
3,197,815	-		HER17_RS14230	0.61	+0.2
3,197,815	-		HER17_RS14230	0.61	+0.6
3,197,845	+		HER17_RS14230	0.65	+0.5
3,197,855	+		HER17_RS14230	0.66	-0.9
3,197,856	-		HER17_RS14230	0.67	-1.2
3,197,859	+		HER17_RS14230	0.67	+0.1
3,197,859	+		HER17_RS14230	0.67	+1.7
3,197,860	-		HER17_RS14230	0.67	+0.3
3,197,860	-		HER17_RS14230	0.67	-1.5
3,197,860	-		HER17_RS14230	0.67	+0.3
3,197,892	+		HER17_RS14230	0.72	-0.2
3,197,949	-		HER17_RS14230	0.79	+0.3
3,198,012	+		HER17_RS14230	0.88	+0.5
3,198,062	+				-0.6
3,198,062	+				-1.1
3,198,115	-				-0.0
3,198,116	+				+0.2