Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13855

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,100,990	+		HER17_RS13840	0.83	+0.4
3,100,990	+		HER17_RS13840	0.83	-0.3
3,100,990	+		HER17_RS13840	0.83	-0.5
3,100,990	+		HER17_RS13840	0.83	+0.2
3,100,991	-		HER17_RS13840	0.83	+0.1
3,100,991	-		HER17_RS13840	0.83	+0.5
3,100,991	-		HER17_RS13840	0.83	+0.8
3,100,991	-		HER17_RS13840	0.83	-2.3
3,100,991	-		HER17_RS13840	0.83	-0.5
3,100,991	-		HER17_RS13840	0.83	-2.3
3,100,993	-		HER17_RS13840	0.83	+0.6
3,100,993	-		HER17_RS13840	0.83	-2.5
3,101,011	+		HER17_RS13840	0.88	-1.6
3,101,011	+		HER17_RS13840	0.88	-1.7
3,101,011	+		HER17_RS13840	0.88	-0.6
3,101,011	+		HER17_RS13840	0.88	+1.5
3,101,011	+		HER17_RS13840	0.88	+1.0
3,101,011	+		HER17_RS13840	0.88	+0.2
3,101,012	-		HER17_RS13840	0.88	-1.6
3,101,012	-		HER17_RS13840	0.88	-1.6
3,101,012	-		HER17_RS13840	0.88	+0.7
3,101,012	-		HER17_RS13840	0.88	+1.0
3,101,012	-		HER17_RS13840	0.88	+0.3
3,101,033	+				-1.0
3,101,044	+				-1.7
3,101,044	+				-0.5
3,101,050	+				-3.2
3,101,051	-				-0.9
3,101,051	-				-0.3
3,101,051	-				-1.3
3,101,130	-				+0.9
3,101,149	+				+0.9
3,101,150	-				+0.4
3,101,150	-				+0.5
3,101,168	-				-1.9
3,101,242	-		HER17_RS13845	0.25	+0.7
3,101,248	+		HER17_RS13845	0.26	-0.8
3,101,248	+		HER17_RS13845	0.26	-2.4
3,101,249	-		HER17_RS13845	0.27	-2.1
3,101,312	-		HER17_RS13845	0.42	-1.2
3,101,346	+		HER17_RS13845	0.51	-0.4
3,101,347	-		HER17_RS13845	0.51	+0.8
3,101,365	-		HER17_RS13845	0.55	-0.2
3,101,475	-		HER17_RS13845	0.82	+0.5
3,101,543	+				+0.9
3,101,544	-				+1.3
3,101,546	+				+1.2
3,101,562	+				-2.4
3,101,600	+		HER17_RS13850	0.12	+0.7
3,101,600	+		HER17_RS13850	0.12	-0.3
3,101,600	+		HER17_RS13850	0.12	+0.2
3,101,600	+		HER17_RS13850	0.12	-0.6
3,101,601	-		HER17_RS13850	0.12	-0.2
3,101,601	-		HER17_RS13850	0.12	-0.5
3,101,618	+		HER17_RS13850	0.17	-0.3
3,101,640	+		HER17_RS13850	0.23	+0.3
3,101,641	-		HER17_RS13850	0.24	-0.5
3,101,641	-		HER17_RS13850	0.24	+0.3
3,101,641	-		HER17_RS13850	0.24	+1.1
3,101,747	-		HER17_RS13850	0.55	+1.3
3,101,747	-		HER17_RS13850	0.55	+1.2
3,101,948	+				+0.2
3,101,948	+				-0.7
3,101,948	+				-0.2
3,101,948	+				-0.2
3,101,948	+				+0.1
3,101,949	-				-1.7
3,101,949	-				+0.9
3,101,949	-				+1.0
3,101,949	-				-0.6
3,101,949	-				+1.1
3,101,951	+				+0.8
3,101,952	-				+1.9
3,102,003	+				-0.7
3,102,004	-				+0.5
3,102,004	-				-0.4
3,102,004	-				+0.8
3,102,004	-				+0.8
3,102,004	-				+0.3
3,102,035	-				-0.3
3,102,035	-				+0.7
3,102,131	+		HER17_RS13855	0.18	-0.3
3,102,131	+		HER17_RS13855	0.18	-0.6
3,102,131	+		HER17_RS13855	0.18	-1.3
3,102,132	-		HER17_RS13855	0.18	+0.1
3,102,132	-		HER17_RS13855	0.18	-2.4
3,102,132	-		HER17_RS13855	0.18	-1.5
3,102,235	-		HER17_RS13855	0.28	-0.3
3,102,266	+		HER17_RS13855	0.31	+0.4
3,102,267	-		HER17_RS13855	0.31	+1.1
3,102,267	-		HER17_RS13855	0.31	-0.5
3,102,332	+		HER17_RS13855	0.38	+0.7
3,102,333	-		HER17_RS13855	0.38	+0.7
3,102,415	-		HER17_RS13855	0.46	+1.2
3,102,415	-		HER17_RS13855	0.46	+0.3
3,102,428	+		HER17_RS13855	0.47	-3.1
3,102,428	+		HER17_RS13855	0.47	+0.3
3,102,428	+		HER17_RS13855	0.47	+0.7
3,102,428	+		HER17_RS13855	0.47	-2.1
3,102,429	-		HER17_RS13855	0.47	-0.5
3,102,429	-		HER17_RS13855	0.47	+0.6
3,102,465	-		HER17_RS13855	0.51	-0.2
3,102,580	+		HER17_RS13855	0.62	+0.4
3,102,580	+		HER17_RS13855	0.62	+0.4
3,102,581	-		HER17_RS13855	0.63	-1.4
3,102,678	+		HER17_RS13855	0.72	-1.0
3,102,678	+		HER17_RS13855	0.72	-0.5
3,102,679	-		HER17_RS13855	0.72	-0.3
3,102,679	-		HER17_RS13855	0.72	+0.5
3,102,680	+		HER17_RS13855	0.72	-0.6
3,102,680	+		HER17_RS13855	0.72	-0.9
3,102,681	-		HER17_RS13855	0.73	+0.2
3,102,681	-		HER17_RS13855	0.73	-0.3
3,102,681	-		HER17_RS13855	0.73	-0.9
3,102,681	-		HER17_RS13855	0.73	+0.1
3,102,682	+		HER17_RS13855	0.73	-0.3
3,102,682	+		HER17_RS13855	0.73	+1.2
3,102,682	+		HER17_RS13855	0.73	-0.4
3,102,682	+		HER17_RS13855	0.73	-2.2
3,102,682	+		HER17_RS13855	0.73	-1.5
3,102,683	-		HER17_RS13855	0.73	-0.3
3,102,683	-		HER17_RS13855	0.73	-0.8
3,102,683	-		HER17_RS13855	0.73	-0.5
3,102,683	-		HER17_RS13855	0.73	+0.0
3,102,683	-		HER17_RS13855	0.73	+0.8
3,102,683	-		HER17_RS13855	0.73	+1.3
3,102,913	-				+0.5
3,102,913	-				-0.6
3,102,913	-				+1.2
3,103,002	-				-1.1
3,103,050	-		HER17_RS13860	0.19	+0.8
3,103,050	-		HER17_RS13860	0.19	+1.5
3,103,070	-		HER17_RS13860	0.25	+2.5
3,103,138	-		HER17_RS13860	0.48	-1.8
3,103,138	-		HER17_RS13860	0.48	-1.3
3,103,162	-		HER17_RS13860	0.56	+0.0
3,103,296	-				+0.4
3,103,301	+				+0.7
3,103,302	-				+0.2
3,103,302	-				+1.0
3,103,336	+				+0.7
3,103,372	+				-1.5
3,103,436	-				+0.4
3,103,436	-				+0.2
3,103,481	+				+0.6
3,103,481	+				-0.3
3,103,482	-				-0.7
3,103,501	+				-0.5
3,103,502	-				-0.5
3,103,502	-				-1.5
3,103,502	-				-0.8
3,103,542	+				+0.3
3,103,548	+				+1.9
3,103,548	+				+0.7
3,103,548	+				-1.9
3,103,548	+				-0.2
3,103,548	+				-2.9
3,103,549	-				-0.6
3,103,549	-				+0.2
3,103,549	-				+0.5
3,103,549	-				+0.1
3,103,549	-				+0.5
3,103,561	+				-1.3
3,103,561	+				-0.6
3,103,561	+				-0.5
3,103,605	+				-1.7
3,103,605	+				+0.0
3,103,605	+				-0.1
3,103,609	+				+0.4
3,103,631	+				-2.2
3,103,771	-		HER17_RS13865	0.28	+0.2
3,103,797	+		HER17_RS13865	0.34	-1.8
3,103,798	-		HER17_RS13865	0.34	-1.7
3,103,798	-		HER17_RS13865	0.34	-2.1
3,103,811	+		HER17_RS13865	0.37	+1.2
3,103,811	+		HER17_RS13865	0.37	+0.3
3,103,812	-		HER17_RS13865	0.37	-0.7
3,103,812	-		HER17_RS13865	0.37	+0.7
3,103,812	-		HER17_RS13865	0.37	-0.6
3,103,838	+		HER17_RS13865	0.43	-0.5
3,103,867	+		HER17_RS13865	0.49	-3.5
3,103,887	-		HER17_RS13865	0.54	-0.9
3,103,887	-		HER17_RS13865	0.54	+1.7
3,103,926	-		HER17_RS13865	0.63	-0.2
3,103,928	+		HER17_RS13865	0.63	+1.1
3,103,929	-		HER17_RS13865	0.63	-0.9
3,103,931	+		HER17_RS13865	0.64	-0.2