Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13420

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
2,972,554	-		HER17_RS13410	0.40	+1.6
2,972,554	-		HER17_RS13410	0.40	-0.6
2,972,566	-		HER17_RS13410	0.41	-0.9
2,972,627	+		HER17_RS13410	0.48	+0.3
2,972,627	+		HER17_RS13410	0.48	+0.6
2,972,835	+		HER17_RS13410	0.70	+0.7
2,972,836	-		HER17_RS13410	0.70	-2.5
2,972,837	+		HER17_RS13410	0.70	-0.8
2,972,837	+		HER17_RS13410	0.70	+0.1
2,972,837	+		HER17_RS13410	0.70	-0.1
2,972,837	+		HER17_RS13410	0.70	-2.3
2,972,837	+		HER17_RS13410	0.70	-0.1
2,972,837	+		HER17_RS13410	0.70	+1.9
2,972,837	+		HER17_RS13410	0.70	+0.6
2,972,838	-		HER17_RS13410	0.70	-0.1
2,972,838	-		HER17_RS13410	0.70	-0.1
2,972,838	-		HER17_RS13410	0.70	-0.3
2,972,838	-		HER17_RS13410	0.70	+0.8
2,972,838	-		HER17_RS13410	0.70	-0.2
2,972,838	-		HER17_RS13410	0.70	-0.2
2,972,838	-		HER17_RS13410	0.70	+0.1
2,973,048	+				-2.5
2,973,111	+				+0.8
2,973,111	+				-0.7
2,973,113	+				-0.5
2,973,114	-				-0.6
2,973,114	-				-0.0
2,973,114	-				-1.0
2,973,288	+		HER17_RS13415	0.46	-1.5
2,973,288	+		HER17_RS13415	0.46	+1.9
2,973,289	-		HER17_RS13415	0.46	-0.8
2,973,434	+		HER17_RS13415	0.79	-0.2
2,973,435	-		HER17_RS13415	0.80	-0.2
2,973,435	-		HER17_RS13415	0.80	-0.0
2,973,510	+				+0.1
2,973,510	+				-0.6
2,973,510	+				-0.0
2,973,511	-				+1.4
2,973,511	-				-0.8
2,973,511	-				-0.6
2,973,511	-				-0.0
2,973,511	-				+0.5
2,973,553	-				+0.8
2,973,565	+				+1.8
2,973,566	-				-0.3
2,973,587	+				+1.3
2,973,587	+				-0.3
2,973,587	+				-0.5
2,973,587	+				-0.6
2,973,588	-				+1.5
2,973,588	-				-0.2
2,973,588	-				+1.0
2,973,727	+				-2.5
2,973,778	+		HER17_RS13420	0.11	-0.2
2,973,793	+		HER17_RS13420	0.12	-1.0
2,973,794	-		HER17_RS13420	0.12	-0.6
2,973,831	+		HER17_RS13420	0.14	-1.1
2,973,907	-		HER17_RS13420	0.18	-1.3
2,973,932	-		HER17_RS13420	0.19	+0.3
2,973,992	-		HER17_RS13420	0.22	-2.6
2,974,068	-		HER17_RS13420	0.26	+0.6
2,974,088	+		HER17_RS13420	0.27	+0.4
2,974,088	+		HER17_RS13420	0.27	-0.4
2,974,088	+		HER17_RS13420	0.27	-0.3
2,974,141	-		HER17_RS13420	0.29	-0.2
2,974,192	+		HER17_RS13420	0.32	-0.4
2,974,368	+		HER17_RS13420	0.41	+1.3
2,974,369	-		HER17_RS13420	0.41	+1.2
2,974,369	-		HER17_RS13420	0.41	-0.2
2,974,392	+		HER17_RS13420	0.42	+2.0
2,974,392	+		HER17_RS13420	0.42	-0.6
2,974,392	+		HER17_RS13420	0.42	-1.6
2,974,393	-		HER17_RS13420	0.42	+1.2
2,974,393	-		HER17_RS13420	0.42	+0.9
2,974,393	-		HER17_RS13420	0.42	+0.1
2,974,393	-		HER17_RS13420	0.42	-1.5
2,974,512	+		HER17_RS13420	0.48	+1.0
2,974,513	-		HER17_RS13420	0.48	-0.0
2,974,513	-		HER17_RS13420	0.48	-2.7
2,974,516	+		HER17_RS13420	0.48	-0.5
2,974,517	-		HER17_RS13420	0.48	-0.0
2,974,629	+		HER17_RS13420	0.54	+0.1
2,974,629	+		HER17_RS13420	0.54	+1.9
2,974,818	+		HER17_RS13420	0.63	-0.2
2,974,819	-		HER17_RS13420	0.63	+0.2
2,974,834	-		HER17_RS13420	0.64	-0.5
2,974,834	-		HER17_RS13420	0.64	-0.4
2,974,834	-		HER17_RS13420	0.64	-0.4
2,974,841	-		HER17_RS13420	0.64	-0.7
2,975,023	-		HER17_RS13420	0.73	-0.1
2,975,103	+		HER17_RS13420	0.77	+0.1
2,975,104	-		HER17_RS13420	0.77	-0.1
2,975,127	+		HER17_RS13420	0.78	+1.0
2,975,127	+		HER17_RS13420	0.78	-0.8
2,975,128	-		HER17_RS13420	0.78	-1.8
2,975,128	-		HER17_RS13420	0.78	-0.5
2,975,128	-		HER17_RS13420	0.78	+0.2
2,975,128	-		HER17_RS13420	0.78	+0.7
2,975,128	-		HER17_RS13420	0.78	+0.9
2,975,128	-		HER17_RS13420	0.78	-0.2
2,975,128	-		HER17_RS13420	0.78	-0.3
2,975,209	+		HER17_RS13420	0.82	-0.8
2,975,210	-		HER17_RS13420	0.82	+1.0
2,975,239	+		HER17_RS13420	0.84	-0.7
2,975,262	+		HER17_RS13420	0.85	+1.4
2,975,263	-		HER17_RS13420	0.85	-2.9
2,975,263	-		HER17_RS13420	0.85	-1.3
2,975,263	-		HER17_RS13420	0.85	+1.6
2,975,277	+		HER17_RS13420	0.86	+0.1
2,975,281	-		HER17_RS13420	0.86	+0.9
2,975,281	-		HER17_RS13420	0.86	+0.5
2,975,286	+		HER17_RS13420	0.86	-2.6
2,975,289	+		HER17_RS13420	0.86	+1.4
2,975,289	+		HER17_RS13420	0.86	+1.2
2,975,301	+		HER17_RS13420	0.87	+0.3
2,975,301	+		HER17_RS13420	0.87	-0.6
2,975,366	-				+0.5
2,975,366	-				+0.1
2,975,431	+				-2.7
2,975,432	-				-2.5
2,975,552	+				-0.1
2,975,553	-				-0.0
2,975,557	+				-0.8
2,975,558	-				+0.7
2,975,576	+				-1.3
2,975,576	+				+0.1
2,975,577	-				+0.5
2,975,577	-				+2.4
2,975,577	-				-1.0
2,975,577	-				-2.7
2,975,577	-				-0.9
2,975,580	+				-0.9
2,975,580	+				+0.6
2,975,580	+				+1.5
2,975,581	-				-0.7
2,975,581	-				-1.6
2,975,703	+				-1.2
2,975,762	+				-1.5
2,975,762	+				-1.0
2,975,834	+				-0.0
2,975,834	+				+0.2
2,975,839	+				-0.0
2,975,840	-				+0.4
2,975,848	-				-0.5
2,975,983	-				-0.5
2,975,983	-				-0.9
2,975,986	-				-1.0
2,975,986	-				-2.3
2,975,986	-				-1.0
2,975,991	+				-0.5
2,975,991	+				+0.2
2,975,992	-				+1.0
2,975,992	-				-0.7
2,976,119	+				+0.6
2,976,119	+				+0.7
2,976,213	+				+0.6
2,976,296	-				+0.8
2,976,346	+				+0.2
2,976,347	-				-1.0
2,976,357	+				+0.8
2,976,408	+		HER17_RS13425	0.18	+0.2
2,976,408	+		HER17_RS13425	0.18	-0.0
2,976,471	+		HER17_RS13425	0.32	-0.5
2,976,472	-		HER17_RS13425	0.32	+0.9
2,976,476	+		HER17_RS13425	0.33	+0.5
2,976,476	+		HER17_RS13425	0.33	-0.3
2,976,477	-		HER17_RS13425	0.33	+0.5
2,976,477	-		HER17_RS13425	0.33	+2.1
2,976,477	-		HER17_RS13425	0.33	+0.6
2,976,477	-		HER17_RS13425	0.33	+0.3
2,976,517	+		HER17_RS13425	0.42	+0.2