Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11975

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
2,658,219	+		HER17_RS11965	0.39	+1.7
2,658,219	+		HER17_RS11965	0.39	+0.3
2,658,261	+		HER17_RS11965	0.64	-0.6
2,658,261	+		HER17_RS11965	0.64	-1.0
2,658,262	-		HER17_RS11965	0.64	-2.2
2,658,262	-		HER17_RS11965	0.64	+1.1
2,658,326	+				-0.8
2,658,327	-				-0.3
2,658,327	-				+0.6
2,658,374	+				-1.8
2,658,375	-				-0.0
2,658,389	+				-0.5
2,658,460	+				+0.4
2,658,461	-				-0.9
2,658,461	-				-0.3
2,658,529	-				-0.8
2,658,545	+				+1.6
2,658,546	-				-2.9
2,658,546	-				-0.2
2,658,546	-				-1.1
2,658,546	-				-1.2
2,658,546	-				-0.2
2,658,553	+				-0.2
2,658,578	+				+1.1
2,658,578	+				+0.4
2,658,578	+				-0.3
2,658,579	-				-0.7
2,658,582	+				+0.5
2,658,582	+				+0.2
2,658,582	+				+0.6
2,658,582	+				-1.0
2,658,706	+		HER17_RS11970	0.14	-0.3
2,658,732	+		HER17_RS11970	0.19	-1.0
2,658,795	-		HER17_RS11970	0.30	-2.7
2,658,896	+		HER17_RS11970	0.48	+0.8
2,658,927	+		HER17_RS11970	0.53	+1.2
2,658,927	+		HER17_RS11970	0.53	-0.9
2,658,927	+		HER17_RS11970	0.53	-0.7
2,658,927	+		HER17_RS11970	0.53	+1.0
2,658,927	+		HER17_RS11970	0.53	+0.5
2,658,928	-		HER17_RS11970	0.54	+0.1
2,658,928	-		HER17_RS11970	0.54	-1.4
2,658,928	-		HER17_RS11970	0.54	+0.2
2,658,959	+		HER17_RS11970	0.59	-0.2
2,658,976	+		HER17_RS11970	0.62	+1.0
2,658,977	-		HER17_RS11970	0.62	-0.8
2,658,977	-		HER17_RS11970	0.62	-0.8
2,658,977	-		HER17_RS11970	0.62	+0.6
2,658,977	-		HER17_RS11970	0.62	-2.3
2,658,977	-		HER17_RS11970	0.62	-0.2
2,658,998	-		HER17_RS11970	0.66	+1.0
2,659,021	+		HER17_RS11970	0.70	-0.9
2,659,022	-		HER17_RS11970	0.70	-0.8
2,659,085	+		HER17_RS11970	0.81	-0.5
2,659,092	-		HER17_RS11970	0.83	+1.3
2,659,117	+		HER17_RS11970	0.87	+0.4
2,659,130	+		HER17_RS11970	0.89	-2.2
2,659,133	+		HER17_RS11970	0.90	-2.4
2,659,134	-				-2.4
2,659,134	-				-1.0
2,659,134	-				+0.4
2,659,134	-				-0.5
2,659,156	-				-2.4
2,659,156	-				-0.7
2,659,156	-				+1.0
2,659,249	+				-1.2
2,659,283	+				+0.8
2,659,283	+				+0.6
2,659,283	+				-0.2
2,659,333	+				+0.8
2,659,334	-				-2.0
2,659,335	+				-0.3
2,659,399	+		HER17_RS11975	0.13	-3.0
2,659,400	-		HER17_RS11975	0.13	-0.2
2,659,679	-		HER17_RS11975	0.30	-2.2
2,659,680	+		HER17_RS11975	0.30	+0.8
2,659,680	+		HER17_RS11975	0.30	+0.1
2,659,680	+		HER17_RS11975	0.30	-1.7
2,659,856	-		HER17_RS11975	0.41	+0.8
2,659,931	+		HER17_RS11975	0.45	+0.4
2,659,932	-		HER17_RS11975	0.45	-1.1
2,659,965	+		HER17_RS11975	0.47	-1.5
2,659,965	+		HER17_RS11975	0.47	+0.1
2,659,966	-		HER17_RS11975	0.47	+0.7
2,659,972	+		HER17_RS11975	0.48	+0.8
2,659,972	+		HER17_RS11975	0.48	-1.3
2,659,972	+		HER17_RS11975	0.48	-2.0
2,659,972	+		HER17_RS11975	0.48	-1.0
2,659,972	+		HER17_RS11975	0.48	-0.4
2,659,973	-		HER17_RS11975	0.48	+0.2
2,659,973	-		HER17_RS11975	0.48	-0.1
2,659,973	-		HER17_RS11975	0.48	+0.4
2,659,973	-		HER17_RS11975	0.48	+0.0
2,659,974	+		HER17_RS11975	0.48	+0.2
2,659,974	+		HER17_RS11975	0.48	-1.0
2,659,975	-		HER17_RS11975	0.48	+0.6
2,659,983	+		HER17_RS11975	0.48	+0.3
2,659,983	+		HER17_RS11975	0.48	+0.8
2,659,984	-		HER17_RS11975	0.48	+0.4
2,659,999	+		HER17_RS11975	0.49	+0.4
2,660,000	-		HER17_RS11975	0.49	+0.2
2,660,000	-		HER17_RS11975	0.49	+0.7
2,660,147	-		HER17_RS11975	0.58	+0.4
2,660,147	-		HER17_RS11975	0.58	-1.6
2,660,206	-		HER17_RS11975	0.62	-0.2
2,660,218	+		HER17_RS11975	0.63	+0.0
2,660,218	+		HER17_RS11975	0.63	+1.9
2,660,342	+		HER17_RS11975	0.70	-0.1
2,660,342	+		HER17_RS11975	0.70	+0.2
2,660,343	-		HER17_RS11975	0.70	+0.4
2,660,343	-		HER17_RS11975	0.70	-1.2
2,660,345	+		HER17_RS11975	0.70	+1.5
2,660,346	-		HER17_RS11975	0.70	-0.5
2,660,413	+		HER17_RS11975	0.75	-0.4
2,660,438	+		HER17_RS11975	0.76	+1.6
2,660,448	+		HER17_RS11975	0.77	+0.3
2,660,549	-		HER17_RS11975	0.83	-1.9
2,660,603	+		HER17_RS11975	0.86	+0.2
2,660,693	-				-1.3
2,660,721	+				+0.6
2,660,798	+				+0.4
2,660,799	-				+0.4
2,660,819	-				-1.8
2,660,844	-				+1.5
2,660,958	-		HER17_RS11980	0.11	-0.9
2,661,052	+		HER17_RS11980	0.19	+0.3
2,661,052	+		HER17_RS11980	0.19	+0.2
2,661,053	-		HER17_RS11980	0.19	-0.2
2,661,053	-		HER17_RS11980	0.19	-0.6
2,661,053	-		HER17_RS11980	0.19	-0.2
2,661,123	+		HER17_RS11980	0.25	-0.5
2,661,123	+		HER17_RS11980	0.25	-0.6
2,661,123	+		HER17_RS11980	0.25	-2.0
2,661,124	-		HER17_RS11980	0.25	-0.1
2,661,124	-		HER17_RS11980	0.25	-0.7
2,661,188	-		HER17_RS11980	0.30	-3.0
2,661,188	-		HER17_RS11980	0.30	+1.7
2,661,292	+		HER17_RS11980	0.38	-0.1
2,661,292	+		HER17_RS11980	0.38	-0.0
2,661,292	+		HER17_RS11980	0.38	-0.1
2,661,292	+		HER17_RS11980	0.38	+0.4
2,661,293	-		HER17_RS11980	0.38	+1.3
2,661,293	-		HER17_RS11980	0.38	+2.5
2,661,293	-		HER17_RS11980	0.38	+0.1
2,661,293	-		HER17_RS11980	0.38	+0.3
2,661,293	-		HER17_RS11980	0.38	+0.9
2,661,293	-		HER17_RS11980	0.38	-0.4
2,661,293	-		HER17_RS11980	0.38	-0.9
2,661,309	-		HER17_RS11980	0.40	-0.1
2,661,384	+		HER17_RS11980	0.46	-0.2
2,661,569	+		HER17_RS11980	0.60	-0.8
2,661,627	+		HER17_RS11980	0.65	-0.7
2,661,782	+		HER17_RS11980	0.78	+0.2