Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03980 and HER17_RS03985 overlap by 4 nucleotides HER17_RS03985 and HER17_RS03990 are separated by 2 nucleotides HER17_RS03990 and HER17_RS03995 are separated by 115 nucleotides
HER17_RS03980: HER17_RS03980 - autotransporter assembly complex protein TamA, at 895,518 to 897,233
_RS03980
HER17_RS03985: HER17_RS03985 - translocation/assembly module TamB, at 897,230 to 901,267
_RS03985
HER17_RS03990: HER17_RS03990 - gamma-glutamylcyclotransferase, at 901,270 to 901,629
_RS03990
HER17_RS03995: HER17_RS03995 - inorganic diphosphatase, at 901,745 to 902,275
_RS03995
Position (kb) 897
898
899
900
901
902 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 896.357 kb on + strand, within HER17_RS03980 at 896.397 kb on - strand, within HER17_RS03980 at 896.436 kb on - strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.655 kb on + strand, within HER17_RS03980 at 896.738 kb on + strand, within HER17_RS03980 at 896.867 kb on + strand, within HER17_RS03980 at 896.868 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.938 kb on - strand, within HER17_RS03980 at 896.945 kb on + strand, within HER17_RS03980 at 897.012 kb on + strand, within HER17_RS03980 at 897.013 kb on - strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.093 kb on - strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.165 kb on - strand at 897.165 kb on - strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.229 kb on + strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.366 kb on + strand at 897.366 kb on + strand at 897.584 kb on - strand at 897.732 kb on + strand, within HER17_RS03985 at 897.733 kb on - strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.997 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.015 kb on + strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.018 kb on + strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.153 kb on - strand, within HER17_RS03985 at 898.221 kb on + strand, within HER17_RS03985 at 898.222 kb on - strand, within HER17_RS03985 at 898.267 kb on - strand, within HER17_RS03985 at 898.509 kb on + strand, within HER17_RS03985 at 898.509 kb on + strand, within HER17_RS03985 at 898.510 kb on - strand, within HER17_RS03985 at 898.510 kb on - strand, within HER17_RS03985 at 898.720 kb on + strand, within HER17_RS03985 at 898.720 kb on + strand, within HER17_RS03985 at 898.721 kb on - strand, within HER17_RS03985 at 898.741 kb on + strand, within HER17_RS03985 at 898.810 kb on + strand, within HER17_RS03985 at 898.811 kb on - strand, within HER17_RS03985 at 898.818 kb on + strand, within HER17_RS03985 at 898.837 kb on - strand, within HER17_RS03985 at 898.853 kb on - strand, within HER17_RS03985 at 898.902 kb on + strand, within HER17_RS03985 at 898.923 kb on - strand, within HER17_RS03985 at 898.931 kb on - strand, within HER17_RS03985 at 898.984 kb on + strand, within HER17_RS03985 at 898.984 kb on + strand, within HER17_RS03985 at 898.985 kb on - strand, within HER17_RS03985 at 899.182 kb on + strand, within HER17_RS03985 at 899.187 kb on + strand, within HER17_RS03985 at 899.337 kb on + strand, within HER17_RS03985 at 899.337 kb on + strand, within HER17_RS03985 at 899.338 kb on - strand, within HER17_RS03985 at 899.419 kb on + strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.506 kb on + strand, within HER17_RS03985 at 899.552 kb on - strand, within HER17_RS03985 at 899.564 kb on + strand, within HER17_RS03985 at 899.565 kb on - strand, within HER17_RS03985 at 899.737 kb on - strand, within HER17_RS03985 at 899.875 kb on + strand, within HER17_RS03985 at 899.882 kb on - strand, within HER17_RS03985 at 899.965 kb on + strand, within HER17_RS03985 at 900.022 kb on + strand, within HER17_RS03985 at 900.022 kb on + strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.058 kb on + strand, within HER17_RS03985 at 900.058 kb on + strand, within HER17_RS03985 at 900.160 kb on + strand, within HER17_RS03985 at 900.160 kb on + strand, within HER17_RS03985 at 900.426 kb on + strand, within HER17_RS03985 at 900.712 kb on + strand, within HER17_RS03985 at 900.712 kb on + strand, within HER17_RS03985 at 900.923 kb on + strand at 900.923 kb on + strand at 900.923 kb on + strand at 900.924 kb on - strand at 900.924 kb on - strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.965 kb on - strand at 900.965 kb on - strand at 900.965 kb on - strand at 901.050 kb on + strand at 901.050 kb on + strand at 901.051 kb on - strand at 901.060 kb on - strand at 901.069 kb on + strand at 901.112 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.152 kb on + strand at 901.152 kb on + strand at 901.179 kb on + strand at 901.180 kb on - strand at 901.180 kb on - strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.251 kb on - strand at 901.265 kb on + strand at 901.266 kb on - strand at 901.278 kb on + strand at 901.279 kb on - strand at 901.295 kb on + strand at 901.295 kb on + strand at 901.375 kb on + strand, within HER17_RS03990 at 901.376 kb on - strand, within HER17_RS03990 at 901.391 kb on - strand, within HER17_RS03990 at 901.403 kb on + strand, within HER17_RS03990 at 901.404 kb on - strand, within HER17_RS03990 at 901.436 kb on - strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.444 kb on - strand, within HER17_RS03990 at 901.475 kb on + strand, within HER17_RS03990 at 901.516 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.546 kb on + strand, within HER17_RS03990 at 901.563 kb on - strand, within HER17_RS03990 at 901.661 kb on + strand at 901.662 kb on - strand at 901.703 kb on + strand at 901.725 kb on + strand at 901.732 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.747 kb on - strand at 901.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 896,357 + HER17_RS03980 0.49 -1.6 896,397 - HER17_RS03980 0.51 -1.4 896,436 - HER17_RS03980 0.53 -2.5 896,475 + HER17_RS03980 0.56 -1.2 896,475 + HER17_RS03980 0.56 +1.6 896,478 + HER17_RS03980 0.56 -2.7 896,478 + HER17_RS03980 0.56 -1.4 896,479 - HER17_RS03980 0.56 -1.0 896,479 - HER17_RS03980 0.56 -3.0 896,655 + HER17_RS03980 0.66 -0.2 896,738 + HER17_RS03980 0.71 -3.3 896,867 + HER17_RS03980 0.79 -3.8 896,868 - HER17_RS03980 0.79 -2.5 896,932 - HER17_RS03980 0.82 -1.0 896,932 - HER17_RS03980 0.82 -4.3 896,933 + HER17_RS03980 0.82 -1.4 896,933 + HER17_RS03980 0.82 -3.1 896,933 + HER17_RS03980 0.82 -2.9 896,933 + HER17_RS03980 0.82 -2.2 896,933 + HER17_RS03980 0.82 -3.3 896,933 + HER17_RS03980 0.82 -2.3 896,933 + HER17_RS03980 0.82 -2.1 896,933 + HER17_RS03980 0.82 -2.3 896,933 + HER17_RS03980 0.82 -3.3 896,933 + HER17_RS03980 0.82 -1.7 896,933 + HER17_RS03980 0.82 -0.5 896,933 + HER17_RS03980 0.82 -3.1 896,934 - HER17_RS03980 0.83 -0.9 896,934 - HER17_RS03980 0.83 -2.1 896,934 - HER17_RS03980 0.83 -3.4 896,934 - HER17_RS03980 0.83 -1.8 896,934 - HER17_RS03980 0.83 -2.3 896,934 - HER17_RS03980 0.83 -2.1 896,937 + HER17_RS03980 0.83 -3.6 896,937 + HER17_RS03980 0.83 -3.5 896,937 + HER17_RS03980 0.83 -2.4 896,938 - HER17_RS03980 0.83 -1.4 896,945 + HER17_RS03980 0.83 -0.7 897,012 + HER17_RS03980 0.87 -3.2 897,013 - HER17_RS03980 0.87 -4.3 897,018 + HER17_RS03980 0.87 -3.6 897,018 + HER17_RS03980 0.87 -0.4 897,018 + HER17_RS03980 0.87 -1.9 897,018 + HER17_RS03980 0.87 -0.8 897,019 - HER17_RS03980 0.87 -1.4 897,019 - HER17_RS03980 0.87 -1.6 897,019 - HER17_RS03980 0.87 -3.3 897,093 - -1.7 897,164 + -3.9 897,164 + -0.8 897,164 + -2.2 897,165 - -3.4 897,165 - -2.1 897,207 + -1.9 897,207 + -1.9 897,207 + -2.7 897,229 + -0.1 897,230 - -0.3 897,230 - -1.1 897,230 - -0.6 897,366 + -2.4 897,366 + -3.8 897,584 - -3.7 897,732 + HER17_RS03985 0.12 -1.6 897,733 - HER17_RS03985 0.12 -0.4 897,951 + HER17_RS03985 0.18 -2.2 897,951 + HER17_RS03985 0.18 -3.0 897,952 - HER17_RS03985 0.18 -3.3 897,952 - HER17_RS03985 0.18 -1.6 897,997 + HER17_RS03985 0.19 -3.1 898,005 + HER17_RS03985 0.19 -2.9 898,005 + HER17_RS03985 0.19 -4.4 898,015 + HER17_RS03985 0.19 -1.6 898,016 - HER17_RS03985 0.19 -3.4 898,016 - HER17_RS03985 0.19 -1.8 898,018 + HER17_RS03985 0.20 -2.7 898,019 - HER17_RS03985 0.20 -2.0 898,019 - HER17_RS03985 0.20 -2.0 898,153 - HER17_RS03985 0.23 -4.4 898,221 + HER17_RS03985 0.25 -1.4 898,222 - HER17_RS03985 0.25 -2.4 898,267 - HER17_RS03985 0.26 -3.7 898,509 + HER17_RS03985 0.32 -2.1 898,509 + HER17_RS03985 0.32 -0.7 898,510 - HER17_RS03985 0.32 -1.7 898,510 - HER17_RS03985 0.32 -1.7 898,720 + HER17_RS03985 0.37 -3.7 898,720 + HER17_RS03985 0.37 -3.7 898,721 - HER17_RS03985 0.37 -2.7 898,741 + HER17_RS03985 0.37 -1.6 898,810 + HER17_RS03985 0.39 -0.7 898,811 - HER17_RS03985 0.39 -3.4 898,818 + HER17_RS03985 0.39 -3.0 898,837 - HER17_RS03985 0.40 -3.4 898,853 - HER17_RS03985 0.40 -1.2 898,902 + HER17_RS03985 0.41 -3.2 898,923 - HER17_RS03985 0.42 -2.4 898,931 - HER17_RS03985 0.42 -2.2 898,984 + HER17_RS03985 0.43 -3.6 898,984 + HER17_RS03985 0.43 -3.5 898,985 - HER17_RS03985 0.43 -0.4 899,182 + HER17_RS03985 0.48 -2.6 899,187 + HER17_RS03985 0.48 -2.9 899,337 + HER17_RS03985 0.52 -2.6 899,337 + HER17_RS03985 0.52 -2.3 899,338 - HER17_RS03985 0.52 -2.9 899,419 + HER17_RS03985 0.54 -1.4 899,420 - HER17_RS03985 0.54 -2.7 899,420 - HER17_RS03985 0.54 -0.7 899,420 - HER17_RS03985 0.54 -1.7 899,420 - HER17_RS03985 0.54 -3.1 899,420 - HER17_RS03985 0.54 -1.9 899,506 + HER17_RS03985 0.56 -3.4 899,552 - HER17_RS03985 0.58 -1.4 899,564 + HER17_RS03985 0.58 +1.0 899,565 - HER17_RS03985 0.58 -1.0 899,737 - HER17_RS03985 0.62 -2.5 899,875 + HER17_RS03985 0.66 -3.0 899,882 - HER17_RS03985 0.66 -2.6 899,965 + HER17_RS03985 0.68 -1.4 900,022 + HER17_RS03985 0.69 -3.8 900,022 + HER17_RS03985 0.69 -3.6 900,023 - HER17_RS03985 0.69 -3.3 900,023 - HER17_RS03985 0.69 -3.1 900,023 - HER17_RS03985 0.69 -3.2 900,023 - HER17_RS03985 0.69 -1.7 900,025 + HER17_RS03985 0.69 -2.6 900,025 + HER17_RS03985 0.69 -3.1 900,025 + HER17_RS03985 0.69 -1.2 900,025 + HER17_RS03985 0.69 -2.3 900,025 + HER17_RS03985 0.69 +1.4 900,025 + HER17_RS03985 0.69 -3.4 900,025 + HER17_RS03985 0.69 -2.0 900,026 - HER17_RS03985 0.69 -0.7 900,026 - HER17_RS03985 0.69 -2.9 900,026 - HER17_RS03985 0.69 -2.9 900,026 - HER17_RS03985 0.69 -1.4 900,026 - HER17_RS03985 0.69 -0.4 900,026 - HER17_RS03985 0.69 -1.3 900,026 - HER17_RS03985 0.69 -4.0 900,058 + HER17_RS03985 0.70 -2.5 900,058 + HER17_RS03985 0.70 -2.6 900,160 + HER17_RS03985 0.73 -3.1 900,160 + HER17_RS03985 0.73 -2.6 900,426 + HER17_RS03985 0.79 -3.1 900,712 + HER17_RS03985 0.86 -3.3 900,712 + HER17_RS03985 0.86 -3.6 900,923 + -2.7 900,923 + -4.8 900,923 + -1.1 900,924 - -2.8 900,924 - -0.6 900,964 + -0.0 900,964 + -3.4 900,964 + -2.1 900,964 + -2.6 900,965 - -3.1 900,965 - -2.8 900,965 - -3.5 901,050 + -1.9 901,050 + -1.4 901,051 - -1.9 901,060 - -3.2 901,069 + -2.7 901,112 + -3.3 901,139 + -1.8 901,139 + +1.2 901,139 + +0.2 901,152 + -2.4 901,152 + -3.2 901,179 + -1.1 901,180 - -2.7 901,180 - -3.6 901,239 + -1.9 901,239 + -2.4 901,239 + -2.1 901,240 - -1.0 901,240 - -0.7 901,240 - -1.6 901,251 - -1.2 901,265 + -1.1 901,266 - +1.0 901,278 + +1.6 901,279 - -2.7 901,295 + -1.4 901,295 + -0.7 901,375 + HER17_RS03990 0.29 -2.2 901,376 - HER17_RS03990 0.29 -0.5 901,391 - HER17_RS03990 0.34 -0.4 901,403 + HER17_RS03990 0.37 -1.0 901,404 - HER17_RS03990 0.37 +0.6 901,436 - HER17_RS03990 0.46 +0.7 901,443 + HER17_RS03990 0.48 -0.8 901,443 + HER17_RS03990 0.48 -2.7 901,443 + HER17_RS03990 0.48 -0.2 901,443 + HER17_RS03990 0.48 -1.0 901,443 + HER17_RS03990 0.48 +0.3 901,444 - HER17_RS03990 0.48 +0.8 901,475 + HER17_RS03990 0.57 -1.4 901,516 - HER17_RS03990 0.68 -1.6 901,541 - HER17_RS03990 0.75 -2.4 901,541 - HER17_RS03990 0.75 -0.9 901,546 + HER17_RS03990 0.77 -2.5 901,563 - HER17_RS03990 0.81 -0.3 901,661 + +0.1 901,662 - +0.4 901,703 + -2.9 901,725 + -0.9 901,732 + +1.3 901,746 + +0.6 901,746 + -0.2 901,746 + +0.4 901,747 - +2.1 901,747 - +0.4
Or see this region's nucleotide sequence