Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16935

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,808,190	+				+0.5
3,808,190	+				+2.1
3,808,190	+				+2.0
3,808,191	-				+0.9
3,808,275	+				+1.0
3,808,275	+				+1.4
3,808,276	-				+0.5
3,808,276	-				+0.5
3,808,306	+				-0.7
3,808,307	-				-0.9
3,808,307	-				+0.3
3,808,310	+				+0.8
3,808,311	-				+0.2
3,808,311	-				+1.4
3,808,345	-				+0.8
3,808,345	-				+1.0
3,808,420	-				+0.7
3,808,551	-		HER17_RS16930	0.27	-1.3
3,808,553	+		HER17_RS16930	0.27	+2.0
3,808,553	+		HER17_RS16930	0.27	-1.3
3,808,554	-		HER17_RS16930	0.27	-1.3
3,808,588	+		HER17_RS16930	0.32	+1.5
3,808,614	-		HER17_RS16930	0.35	-0.9
3,808,685	+		HER17_RS16930	0.45	-0.0
3,808,686	-		HER17_RS16930	0.45	+1.6
3,808,721	+		HER17_RS16930	0.49	-0.5
3,808,721	+		HER17_RS16930	0.49	+1.3
3,808,722	-		HER17_RS16930	0.50	-0.6
3,808,727	-		HER17_RS16930	0.50	+0.4
3,808,729	+		HER17_RS16930	0.51	-0.7
3,808,730	-		HER17_RS16930	0.51	-0.3
3,808,730	-		HER17_RS16930	0.51	-1.9
3,808,755	-		HER17_RS16930	0.54	+3.9
3,808,755	-		HER17_RS16930	0.54	+0.8
3,808,781	-		HER17_RS16930	0.57	+0.6
3,808,866	+		HER17_RS16930	0.69	+0.3
3,808,869	+		HER17_RS16930	0.69	-1.4
3,808,869	+		HER17_RS16930	0.69	+0.4
3,808,869	+		HER17_RS16930	0.69	+0.3
3,808,869	+		HER17_RS16930	0.69	-0.1
3,808,870	-		HER17_RS16930	0.69	+2.3
3,808,870	-		HER17_RS16930	0.69	-0.2
3,809,010	+		HER17_RS16930	0.88	+0.1
3,809,010	+		HER17_RS16930	0.88	+1.3
3,809,011	-		HER17_RS16930	0.88	-1.0
3,809,011	-		HER17_RS16930	0.88	+1.1
3,809,011	-		HER17_RS16930	0.88	+0.3
3,809,016	+		HER17_RS16930	0.89	+0.1
3,809,017	-		HER17_RS16930	0.89	+0.4
3,809,019	+		HER17_RS16930	0.89	+0.4
3,809,019	+		HER17_RS16930	0.89	-0.3
3,809,020	-		HER17_RS16930	0.89	-0.7
3,809,020	-		HER17_RS16930	0.89	-1.4
3,809,057	+				-0.7
3,809,093	+				-1.9
3,809,094	-				+1.2
3,809,098	-				+1.8
3,809,098	-				-3.3
3,809,098	-				+1.3
3,809,102	+				+0.4
3,809,102	+				+0.7
3,809,102	+				-0.5
3,809,103	-				-1.5
3,809,247	-		HER17_RS16935	0.13	-1.2
3,809,318	+		HER17_RS16935	0.19	-0.2
3,809,319	-		HER17_RS16935	0.20	+1.8
3,809,347	+		HER17_RS16935	0.22	+1.7
3,809,347	+		HER17_RS16935	0.22	+0.9
3,809,379	-		HER17_RS16935	0.25	-1.5
3,809,379	-		HER17_RS16935	0.25	+0.7
3,809,384	+		HER17_RS16935	0.26	-0.4
3,809,438	+		HER17_RS16935	0.31	+0.5
3,809,438	+		HER17_RS16935	0.31	+1.0
3,809,438	+		HER17_RS16935	0.31	-0.1
3,809,439	-		HER17_RS16935	0.31	-0.8
3,809,439	-		HER17_RS16935	0.31	+1.4
3,809,439	-		HER17_RS16935	0.31	-0.7
3,809,439	-		HER17_RS16935	0.31	-2.5
3,809,439	-		HER17_RS16935	0.31	-1.9
3,809,440	+		HER17_RS16935	0.31	-0.0
3,809,464	+		HER17_RS16935	0.34	+2.1
3,809,464	+		HER17_RS16935	0.34	+0.0
3,809,465	-		HER17_RS16935	0.34	-1.3
3,809,493	+		HER17_RS16935	0.36	-0.4
3,809,494	-		HER17_RS16935	0.36	-0.1
3,809,687	+		HER17_RS16935	0.55	-0.3
3,809,688	-		HER17_RS16935	0.55	-1.4
3,809,688	-		HER17_RS16935	0.55	-0.1
3,809,688	-		HER17_RS16935	0.55	+0.3
3,809,688	-		HER17_RS16935	0.55	+1.1
3,809,688	-		HER17_RS16935	0.55	+1.1
3,809,694	+		HER17_RS16935	0.56	+0.2
3,809,694	+		HER17_RS16935	0.56	-1.9
3,809,725	+		HER17_RS16935	0.59	+0.3
3,809,725	+		HER17_RS16935	0.59	+0.3
3,809,725	+		HER17_RS16935	0.59	+0.4
3,809,726	-		HER17_RS16935	0.59	+0.1
3,809,726	-		HER17_RS16935	0.59	+1.1
3,809,765	+		HER17_RS16935	0.63	-0.2
3,809,765	+		HER17_RS16935	0.63	+1.1
3,809,765	+		HER17_RS16935	0.63	+0.4
3,809,765	+		HER17_RS16935	0.63	-0.8
3,809,765	+		HER17_RS16935	0.63	+0.8
3,809,765	+		HER17_RS16935	0.63	+0.1
3,809,766	-		HER17_RS16935	0.63	+0.2
3,809,766	-		HER17_RS16935	0.63	-0.0
3,809,766	-		HER17_RS16935	0.63	-0.2
3,809,766	-		HER17_RS16935	0.63	-0.2
3,809,766	-		HER17_RS16935	0.63	-0.8
3,809,766	-		HER17_RS16935	0.63	+0.7
3,809,766	-		HER17_RS16935	0.63	-0.6
3,809,766	-		HER17_RS16935	0.63	+0.6
3,809,766	-		HER17_RS16935	0.63	+0.0
3,809,980	+		HER17_RS16935	0.83	-0.9
3,809,980	+		HER17_RS16935	0.83	-2.9
3,809,995	+		HER17_RS16935	0.85	+0.4
3,810,083	+				-0.9
3,810,084	-				-0.3
3,810,128	-				-0.8
3,810,133	-				-0.9
3,810,139	+				+0.3
3,810,139	+				+2.3
3,810,139	+				-0.7
3,810,139	+				+0.6
3,810,140	-				-0.4
3,810,140	-				+1.7
3,810,143	+				+0.1
3,810,143	+				-0.3
3,810,143	+				-0.5
3,810,150	-				-0.5
3,810,183	+				+2.0
3,810,196	+				-0.8
3,810,196	+				+0.0
3,810,196	+				+0.5
3,810,196	+				+1.0
3,810,196	+				+0.3
3,810,197	-				-1.0
3,810,197	-				-0.4
3,810,328	-		HER17_RS16940	0.26	+0.7
3,810,346	+		HER17_RS16940	0.29	+0.4
3,810,347	-		HER17_RS16940	0.29	-3.4
3,810,347	-		HER17_RS16940	0.29	-0.4
3,810,347	-		HER17_RS16940	0.29	+0.5
3,810,473	-		HER17_RS16940	0.52	+1.0
3,810,476	+		HER17_RS16940	0.52	-0.8
3,810,477	-		HER17_RS16940	0.52	+0.4
3,810,477	-		HER17_RS16940	0.52	-0.0
3,810,581	+		HER17_RS16940	0.71	-1.0
3,810,581	+		HER17_RS16940	0.71	+0.5
3,810,581	+		HER17_RS16940	0.71	-1.4
3,810,581	+		HER17_RS16940	0.71	+0.4
3,810,582	-		HER17_RS16940	0.71	+0.4
3,810,590	-		HER17_RS16940	0.72	+0.7
3,810,590	-		HER17_RS16940	0.72	+0.2
3,810,681	+		HER17_RS16940	0.88	+1.1
3,810,730	+				-0.0
3,810,740	+				+1.4
3,810,744	+				-1.5
3,810,744	+				-1.8
3,810,744	+				+1.8
3,810,745	-				-0.2
3,810,746	+				+1.1
3,810,746	+				+1.1
3,810,747	-				+0.0
3,810,755	+				+1.0
3,810,782	+				-0.6
3,810,782	+				-1.3
3,810,782	+				-1.3
3,810,825	+				+1.7
3,810,857	+		HER17_RS16945	0.13	+2.0
3,810,858	-		HER17_RS16945	0.13	-0.8
3,810,980	+		HER17_RS16945	0.29	-0.1
3,810,981	-		HER17_RS16945	0.29	+0.7
3,810,981	-		HER17_RS16945	0.29	-1.1
3,811,026	+		HER17_RS16945	0.35	+0.7
3,811,026	+		HER17_RS16945	0.35	+0.9
3,811,027	-		HER17_RS16945	0.35	-0.4
3,811,027	-		HER17_RS16945	0.35	+0.9
3,811,040	-		HER17_RS16945	0.37	+0.6
3,811,110	+		HER17_RS16945	0.47	-0.7
3,811,111	-		HER17_RS16945	0.47	+0.3
3,811,111	-		HER17_RS16945	0.47	-0.4
3,811,117	+		HER17_RS16945	0.47	+1.2