Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15430

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,458,349	+		HER17_RS15420	0.66	+1.0
3,458,349	+		HER17_RS15420	0.66	+1.0
3,458,350	-		HER17_RS15420	0.66	-0.3
3,458,350	-		HER17_RS15420	0.66	+2.0
3,458,350	-		HER17_RS15420	0.66	-0.0
3,458,411	+		HER17_RS15420	0.77	+2.0
3,458,411	+		HER17_RS15420	0.77	+0.4
3,458,411	+		HER17_RS15420	0.77	-0.8
3,458,412	-		HER17_RS15420	0.77	+0.5
3,458,413	+		HER17_RS15420	0.78	-0.1
3,458,431	+		HER17_RS15420	0.81	+0.5
3,458,431	+		HER17_RS15420	0.81	-1.3
3,458,431	+		HER17_RS15420	0.81	+0.3
3,458,431	+		HER17_RS15420	0.81	-0.8
3,458,431	+		HER17_RS15420	0.81	-1.8
3,458,432	-		HER17_RS15420	0.81	-1.6
3,458,432	-		HER17_RS15420	0.81	+2.4
3,458,432	-		HER17_RS15420	0.81	+0.8
3,458,432	-		HER17_RS15420	0.81	-1.2
3,458,432	-		HER17_RS15420	0.81	-1.9
3,458,458	+		HER17_RS15420	0.86	-0.2
3,458,458	+		HER17_RS15420	0.86	+0.5
3,458,459	-		HER17_RS15420	0.86	-1.8
3,458,481	+				-0.5
3,458,481	+				+1.8
3,458,481	+				-1.1
3,458,481	+				+1.5
3,458,481	+				+1.4
3,458,481	+				-1.1
3,458,482	-				-0.3
3,458,482	-				-0.1
3,458,482	-				-1.0
3,458,482	-				-1.0
3,458,482	-				-2.3
3,458,482	-				+1.0
3,458,485	+				-0.1
3,458,485	+				-1.2
3,458,486	-				-1.8
3,458,486	-				-2.4
3,458,509	+				-0.3
3,458,510	-				-1.8
3,458,513	-				+0.5
3,458,513	-				-0.9
3,458,513	-				+0.2
3,458,521	+				+0.3
3,458,522	-				-1.5
3,458,526	-				-0.9
3,458,526	-				-1.2
3,458,534	+				+0.6
3,458,534	+				-1.0
3,458,534	+				+3.6
3,458,535	-				-2.2
3,458,538	-				-2.0
3,458,539	+				-1.2
3,458,539	+				+1.0
3,458,539	+				+1.0
3,458,540	-				-2.4
3,458,540	-				-2.1
3,458,614	-				-1.6
3,458,628	+				-1.3
3,458,695	+		HER17_RS15425	0.22	-2.8
3,458,696	-		HER17_RS15425	0.23	-0.9
3,458,702	-		HER17_RS15425	0.24	-0.7
3,458,754	+		HER17_RS15425	0.35	-2.2
3,458,755	-		HER17_RS15425	0.35	-0.2
3,458,757	+		HER17_RS15425	0.36	+0.1
3,458,757	+		HER17_RS15425	0.36	-1.6
3,458,797	-		HER17_RS15425	0.44	-1.5
3,458,935	+		HER17_RS15425	0.74	-3.3
3,458,936	-		HER17_RS15425	0.74	-2.0
3,458,943	+		HER17_RS15425	0.75	-2.0
3,458,944	-		HER17_RS15425	0.76	-2.1
3,458,985	-		HER17_RS15425	0.84	-1.8
3,458,985	-		HER17_RS15425	0.84	-2.0
3,458,985	-		HER17_RS15425	0.84	-2.0
3,459,092	+				-0.1
3,459,092	+				+0.6
3,459,093	-				+2.3
3,459,093	-				-3.8
3,459,132	-				-2.1
3,459,132	-				-2.2
3,459,148	+				+0.7
3,459,148	+				-1.2
3,459,148	+				+0.3
3,459,149	-				-0.3
3,459,149	-				+0.7
3,459,156	-				+0.0
3,459,156	-				-1.3
3,459,181	+				-1.5
3,459,183	+				-0.9
3,459,183	+				-0.7
3,459,183	+				+3.4
3,459,184	-				-0.6
3,459,184	-				+1.4
3,459,184	-				-2.9
3,459,184	-				+0.3
3,459,184	-				+0.7
3,459,184	-				+0.2
3,459,191	+				+0.1
3,459,191	+				-1.3
3,459,236	+				+0.7
3,459,236	+				-0.0
3,459,236	+				-0.8
3,459,236	+				-0.2
3,459,236	+				-0.4
3,459,236	+				-0.7
3,459,236	+				+0.0
3,459,237	-				-2.0
3,459,238	+				-0.3
3,459,238	+				-2.7
3,459,238	+				-0.8
3,459,238	+				-0.1
3,459,239	-				+1.6
3,459,267	-				-1.6
3,459,270	+				-3.0
3,459,271	-				-1.0
3,459,307	+				+0.0
3,459,309	+				+1.0
3,459,309	+				-2.1
3,459,310	-				+1.2
3,459,310	-				+1.2
3,459,310	-				+0.7
3,459,310	-				+0.0
3,459,310	-				+0.1
3,459,411	-		HER17_RS15430	0.14	+1.0
3,459,534	+		HER17_RS15430	0.25	+1.0
3,459,534	+		HER17_RS15430	0.25	-0.6
3,459,534	+		HER17_RS15430	0.25	-1.2
3,459,534	+		HER17_RS15430	0.25	+0.0
3,459,534	+		HER17_RS15430	0.25	+0.8
3,459,534	+		HER17_RS15430	0.25	-1.0
3,459,534	+		HER17_RS15430	0.25	+0.3
3,459,535	-		HER17_RS15430	0.25	-1.5
3,459,535	-		HER17_RS15430	0.25	+0.3
3,459,535	-		HER17_RS15430	0.25	-0.2
3,459,535	-		HER17_RS15430	0.25	+2.8
3,459,535	-		HER17_RS15430	0.25	+0.5
3,459,535	-		HER17_RS15430	0.25	-1.0
3,459,535	-		HER17_RS15430	0.25	+0.0
3,459,568	-		HER17_RS15430	0.28	+1.1
3,459,594	+		HER17_RS15430	0.31	-1.6
3,459,595	-		HER17_RS15430	0.31	-0.5
3,459,596	+		HER17_RS15430	0.31	-2.4
3,459,596	+		HER17_RS15430	0.31	+0.0
3,459,596	+		HER17_RS15430	0.31	-1.8
3,459,597	-		HER17_RS15430	0.31	+0.6
3,459,597	-		HER17_RS15430	0.31	+0.6
3,459,597	-		HER17_RS15430	0.31	-0.5
3,459,597	-		HER17_RS15430	0.31	-0.4
3,459,597	-		HER17_RS15430	0.31	+1.2
3,459,597	-		HER17_RS15430	0.31	+0.5
3,459,613	-		HER17_RS15430	0.33	-0.5
3,459,648	+		HER17_RS15430	0.36	-0.5
3,459,729	-		HER17_RS15430	0.43	-0.4
3,459,787	+		HER17_RS15430	0.48	+0.2
3,459,791	+		HER17_RS15430	0.49	-2.0
3,459,865	-		HER17_RS15430	0.55	+0.8
3,460,026	-		HER17_RS15430	0.70	+0.1
3,460,057	+		HER17_RS15430	0.73	-3.3
3,460,057	+		HER17_RS15430	0.73	-0.5
3,460,057	+		HER17_RS15430	0.73	+1.4
3,460,058	-		HER17_RS15430	0.73	+1.0
3,460,058	-		HER17_RS15430	0.73	-0.6
3,460,058	-		HER17_RS15430	0.73	-0.1
3,460,060	-		HER17_RS15430	0.73	+0.2
3,460,095	-		HER17_RS15430	0.76	+2.4
3,460,095	-		HER17_RS15430	0.76	-3.4
3,460,095	-		HER17_RS15430	0.76	-1.0
3,460,122	-		HER17_RS15430	0.79	+0.5
3,460,122	-		HER17_RS15430	0.79	+1.5
3,460,298	-				+0.6
3,460,329	-				+0.6
3,460,366	+				+0.3
3,460,367	-				+1.7
3,460,425	+		HER17_RS15435	0.10	+0.3
3,460,425	+		HER17_RS15435	0.10	+0.1
3,460,426	-		HER17_RS15435	0.11	-1.3
3,460,484	+		HER17_RS15435	0.19	+1.2
3,460,484	+		HER17_RS15435	0.19	-0.5
3,460,484	+		HER17_RS15435	0.19	-0.4
3,460,484	+		HER17_RS15435	0.19	+0.3
3,460,484	+		HER17_RS15435	0.19	+0.3
3,460,484	+		HER17_RS15435	0.19	+1.1
3,460,484	+		HER17_RS15435	0.19	+1.0
3,460,485	-		HER17_RS15435	0.19	-1.3
3,460,485	-		HER17_RS15435	0.19	+0.3
3,460,485	-		HER17_RS15435	0.19	+0.0
3,460,485	-		HER17_RS15435	0.19	+0.9
3,460,571	-		HER17_RS15435	0.32	+0.7
3,460,578	+		HER17_RS15435	0.33	+0.7
3,460,578	+		HER17_RS15435	0.33	-0.5
3,460,637	+		HER17_RS15435	0.42	-0.2
3,460,641	+		HER17_RS15435	0.43	+0.2
3,460,641	+		HER17_RS15435	0.43	+3.1
3,460,642	-		HER17_RS15435	0.43	+1.4
3,460,642	-		HER17_RS15435	0.43	+0.6
3,460,718	-		HER17_RS15435	0.55	-0.1
3,460,736	-		HER17_RS15435	0.57	+0.4
3,460,789	+		HER17_RS15435	0.65	-0.9
3,460,789	+		HER17_RS15435	0.65	+1.8
3,460,799	+		HER17_RS15435	0.67	+0.8
3,460,799	+		HER17_RS15435	0.67	-0.7
3,460,799	+		HER17_RS15435	0.67	-2.4
3,460,799	+		HER17_RS15435	0.67	+0.1
3,460,799	+		HER17_RS15435	0.67	+0.8
3,460,799	+		HER17_RS15435	0.67	+1.7
3,460,800	-		HER17_RS15435	0.67	-1.3
3,460,800	-		HER17_RS15435	0.67	-1.0
3,460,800	-		HER17_RS15435	0.67	+0.1
3,460,805	+		HER17_RS15435	0.68	+0.2
3,460,805	+		HER17_RS15435	0.68	-0.5
3,460,808	+		HER17_RS15435	0.68	+0.7
3,460,808	+		HER17_RS15435	0.68	+1.6
3,460,809	-		HER17_RS15435	0.68	+1.0
3,460,809	-		HER17_RS15435	0.68	+0.9
3,460,845	-		HER17_RS15435	0.74	-0.2
3,460,845	-		HER17_RS15435	0.74	-0.5
3,460,871	+		HER17_RS15435	0.78	-1.8
3,460,894	-		HER17_RS15435	0.81	+0.3
3,460,907	-		HER17_RS15435	0.83	-0.0
3,460,907	-		HER17_RS15435	0.83	-1.4
3,460,931	+		HER17_RS15435	0.87	-0.0
3,460,943	+		HER17_RS15435	0.89	-2.0
3,460,944	-		HER17_RS15435	0.89	-0.4
3,460,981	+				-0.6
3,461,019	+				-1.2
3,461,019	+				+1.3
3,461,020	-				-0.7
3,461,020	-				-1.3
3,461,120	+				-1.3
3,461,120	+				+0.2
3,461,121	-				-1.0
3,461,121	-				-0.0
3,461,121	-				-0.5
3,461,169	+				-0.8
3,461,176	-				-1.0
3,461,219	+				+0.0
3,461,219	+				-1.8
3,461,219	+				+1.4
3,461,220	-				+0.7