Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13135

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
2,915,014	-		HER17_RS13125	0.30	+0.5
2,915,025	+		HER17_RS13125	0.31	+0.3
2,915,120	+		HER17_RS13125	0.40	+1.6
2,915,121	-		HER17_RS13125	0.40	-0.7
2,915,121	-		HER17_RS13125	0.40	-0.8
2,915,194	-		HER17_RS13125	0.46	+1.4
2,915,260	+		HER17_RS13125	0.52	+1.1
2,915,273	+		HER17_RS13125	0.53	+0.9
2,915,273	+		HER17_RS13125	0.53	+0.7
2,915,273	+		HER17_RS13125	0.53	+0.8
2,915,274	-		HER17_RS13125	0.53	-0.3
2,915,274	-		HER17_RS13125	0.53	-0.0
2,915,274	-		HER17_RS13125	0.53	-0.1
2,915,274	-		HER17_RS13125	0.53	+1.6
2,915,279	+		HER17_RS13125	0.53	+0.2
2,915,365	+		HER17_RS13125	0.61	-0.4
2,915,421	+		HER17_RS13125	0.66	-0.1
2,915,568	-		HER17_RS13125	0.78	-1.3
2,915,568	-		HER17_RS13125	0.78	-0.5
2,915,584	+		HER17_RS13125	0.80	+0.1
2,915,606	+		HER17_RS13125	0.81	-0.4
2,915,614	-		HER17_RS13125	0.82	+0.2
2,915,614	-		HER17_RS13125	0.82	-0.3
2,915,614	-		HER17_RS13125	0.82	+0.4
2,915,614	-		HER17_RS13125	0.82	+1.4
2,915,679	+		HER17_RS13125	0.88	+0.4
2,915,679	+		HER17_RS13125	0.88	+0.2
2,915,685	+		HER17_RS13125	0.88	+0.0
2,915,686	-		HER17_RS13125	0.88	-1.3
2,915,686	-		HER17_RS13125	0.88	-1.8
2,915,687	+		HER17_RS13125	0.88	-0.6
2,915,688	-		HER17_RS13125	0.89	-0.7
2,915,688	-		HER17_RS13125	0.89	-1.7
2,915,701	-		HER17_RS13125	0.90	-1.4
2,915,706	-				+0.4
2,915,706	-				+1.0
2,915,706	-				+0.5
2,915,741	+				-3.2
2,915,741	+				+0.3
2,915,841	-		HER17_RS13130	0.15	+0.6
2,915,962	+		HER17_RS13130	0.72	+1.0
2,915,963	-		HER17_RS13130	0.73	+0.4
2,915,969	-		HER17_RS13130	0.76	-0.4
2,915,999	+				-0.6
2,916,005	+				+1.1
2,916,005	+				+0.5
2,916,005	+				-0.8
2,916,005	+				+0.6
2,916,005	+				-0.4
2,916,006	-				+0.1
2,916,020	+				+1.1
2,916,020	+				+0.4
2,916,020	+				+0.6
2,916,020	+				+1.2
2,916,020	+				-0.3
2,916,021	-				+1.3
2,916,021	-				+0.0
2,916,021	-				+0.3
2,916,081	+				+0.6
2,916,210	+		HER17_RS13135	0.22	-1.3
2,916,213	+		HER17_RS13135	0.22	-0.4
2,916,265	+		HER17_RS13135	0.27	-0.8
2,916,265	+		HER17_RS13135	0.27	+0.5
2,916,266	-		HER17_RS13135	0.28	+0.3
2,916,319	+		HER17_RS13135	0.33	-0.5
2,916,319	+		HER17_RS13135	0.33	-0.1
2,916,319	+		HER17_RS13135	0.33	+1.7
2,916,320	-		HER17_RS13135	0.33	+2.1
2,916,320	-		HER17_RS13135	0.33	+0.7
2,916,320	-		HER17_RS13135	0.33	+1.6
2,916,446	+		HER17_RS13135	0.47	-1.6
2,916,447	-		HER17_RS13135	0.47	-0.7
2,916,447	-		HER17_RS13135	0.47	-0.6
2,916,535	+		HER17_RS13135	0.56	+0.9
2,916,575	+		HER17_RS13135	0.61	+0.8
2,916,575	+		HER17_RS13135	0.61	+1.9
2,916,575	+		HER17_RS13135	0.61	+0.3
2,916,575	+		HER17_RS13135	0.61	-0.1
2,916,576	-		HER17_RS13135	0.61	-0.3
2,916,576	-		HER17_RS13135	0.61	+0.7
2,916,610	+		HER17_RS13135	0.65	+0.6
2,916,610	+		HER17_RS13135	0.65	-0.2
2,916,630	+		HER17_RS13135	0.67	-0.8
2,916,631	-		HER17_RS13135	0.67	-0.1
2,916,677	+		HER17_RS13135	0.72	+2.6
2,916,698	-		HER17_RS13135	0.74	+0.1
2,916,698	-		HER17_RS13135	0.74	+1.4
2,916,764	+		HER17_RS13135	0.81	-1.6
2,916,786	+		HER17_RS13135	0.83	+0.3
2,916,787	-		HER17_RS13135	0.84	-1.8
2,916,789	+		HER17_RS13135	0.84	-0.3
2,916,790	-		HER17_RS13135	0.84	+0.1
2,916,790	-		HER17_RS13135	0.84	-0.0
2,916,792	+		HER17_RS13135	0.84	-1.1
2,916,792	+		HER17_RS13135	0.84	-0.4
2,916,860	+				-3.3
2,916,861	-				+0.5
2,916,861	-				-0.0
2,916,861	-				+0.5
2,916,879	+				-0.3
2,916,879	+				-0.8
2,916,879	+				+0.3
2,916,880	-				-2.0
2,916,880	-				+0.7
2,916,882	+				-0.1
2,916,883	-				-1.2
2,916,909	+				+2.3
2,916,918	+				+1.4
2,916,986	+				+1.8
2,916,986	+				+1.1
2,916,986	+				+0.2
2,916,987	-				-0.1
2,916,987	-				-0.3
2,916,987	-				+0.7
2,916,987	-				+0.6
2,917,007	+				+0.6
2,917,008	-				-1.1
2,917,064	-				-0.1
2,917,064	-				+0.0
2,917,116	+				-0.4
2,917,117	-				-0.7
2,917,122	-				-1.4
2,917,122	-				-2.4
2,917,179	+				+0.4
2,917,260	+		HER17_RS13140	0.13	-0.7
2,917,261	-		HER17_RS13140	0.13	+1.0
2,917,423	-		HER17_RS13140	0.20	-0.2
2,917,434	+		HER17_RS13140	0.20	-0.3
2,917,435	-		HER17_RS13140	0.20	+0.5
2,917,435	-		HER17_RS13140	0.20	-0.8
2,917,435	-		HER17_RS13140	0.20	-0.8
2,917,443	-		HER17_RS13140	0.21	+1.6
2,917,451	+		HER17_RS13140	0.21	+0.3
2,917,465	+		HER17_RS13140	0.21	-0.8
2,917,473	-		HER17_RS13140	0.22	+0.3
2,917,572	+		HER17_RS13140	0.26	+1.1
2,917,572	+		HER17_RS13140	0.26	-3.4
2,917,572	+		HER17_RS13140	0.26	+1.2
2,917,573	-		HER17_RS13140	0.26	+0.3
2,917,573	-		HER17_RS13140	0.26	+0.2
2,917,574	+		HER17_RS13140	0.26	-0.3
2,917,575	-		HER17_RS13140	0.26	-2.4
2,917,575	-		HER17_RS13140	0.26	-0.2
2,917,638	+		HER17_RS13140	0.28	+0.1
2,917,638	+		HER17_RS13140	0.28	+0.6
2,917,639	-		HER17_RS13140	0.28	-0.1
2,917,639	-		HER17_RS13140	0.28	-1.9
2,917,647	+		HER17_RS13140	0.29	+1.1
2,917,648	-		HER17_RS13140	0.29	-0.1
2,917,713	+		HER17_RS13140	0.32	-0.3
2,917,713	+		HER17_RS13140	0.32	-1.4
2,917,757	+		HER17_RS13140	0.33	-0.1
2,917,757	+		HER17_RS13140	0.33	-0.7
2,917,758	-		HER17_RS13140	0.33	+0.9
2,917,761	+		HER17_RS13140	0.33	+0.0
2,917,761	+		HER17_RS13140	0.33	+0.2
2,917,761	+		HER17_RS13140	0.33	-0.4
2,917,762	-		HER17_RS13140	0.33	+1.3
2,917,762	-		HER17_RS13140	0.33	+0.3
2,917,762	-		HER17_RS13140	0.33	+0.5
2,917,770	+		HER17_RS13140	0.34	-1.4
2,917,770	+		HER17_RS13140	0.34	+0.4
2,917,770	+		HER17_RS13140	0.34	+0.5
2,917,773	+		HER17_RS13140	0.34	-1.8
2,917,774	-		HER17_RS13140	0.34	+0.2
2,917,850	+		HER17_RS13140	0.37	+0.3
2,917,851	-		HER17_RS13140	0.37	-1.4
2,917,908	+		HER17_RS13140	0.39	-3.0
2,917,908	+		HER17_RS13140	0.39	+1.7
2,917,909	-		HER17_RS13140	0.39	+1.9
2,917,909	-		HER17_RS13140	0.39	-1.1
2,917,909	-		HER17_RS13140	0.39	+0.4