Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08035

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
1,767,665	-				+0.6
1,767,665	-				+0.5
1,767,665	-				+1.1
1,767,665	-				-0.8
1,767,665	-				-0.2
1,767,689	+				-0.4
1,767,718	+				+1.2
1,767,718	+				+1.1
1,767,719	-				-2.2
1,767,719	-				-1.8
1,767,719	-				-2.6
1,767,761	+				+0.6
1,767,761	+				+1.4
1,767,761	+				+0.4
1,767,881	+		HER17_RS21945	0.12	+0.5
1,767,882	-		HER17_RS21945	0.13	+0.2
1,767,882	-		HER17_RS21945	0.13	+0.2
1,767,900	+		HER17_RS21945	0.29	-0.6
1,767,901	-		HER17_RS21945	0.30	+0.1
1,767,933	+		HER17_RS21945	0.59	-0.3
1,767,933	+		HER17_RS21945	0.59	+0.5
1,767,933	+		HER17_RS21945	0.59	+0.6
1,767,933	+		HER17_RS21945	0.59	+2.0
1,767,933	+		HER17_RS21945	0.59	+0.3
1,767,933	+		HER17_RS21945	0.59	+1.4
1,767,933	+		HER17_RS21945	0.59	-0.5
1,767,933	+		HER17_RS21945	0.59	+0.9
1,767,934	-		HER17_RS21945	0.59	-1.2
1,767,934	-		HER17_RS21945	0.59	+0.3
1,767,934	-		HER17_RS21945	0.59	-0.4
1,767,934	-		HER17_RS21945	0.59	-1.3
1,767,934	-		HER17_RS21945	0.59	+0.1
1,767,934	-		HER17_RS21945	0.59	+1.1
1,767,993	+				-0.2
1,768,004	+				+0.0
1,768,086	+				-1.2
1,768,090	+				+1.3
1,768,118	-				-0.2
1,768,126	+		HER17_RS08030	0.11	-0.2
1,768,126	+		HER17_RS08030	0.11	-0.2
1,768,126	+		HER17_RS08030	0.11	+0.4
1,768,127	-		HER17_RS08030	0.11	+0.2
1,768,127	-		HER17_RS08030	0.11	+0.3
1,768,127	-		HER17_RS08030	0.11	+1.2
1,768,127	-		HER17_RS08030	0.11	+1.3
1,768,127	-		HER17_RS08030	0.11	-1.0
1,768,186	-		HER17_RS08030	0.22	-1.8
1,768,189	+		HER17_RS08030	0.22	+0.1
1,768,193	-		HER17_RS08030	0.23	+0.8
1,768,216	+		HER17_RS08030	0.27	+0.1
1,768,217	-		HER17_RS08030	0.27	+0.2
1,768,217	-		HER17_RS08030	0.27	+0.3
1,768,250	+		HER17_RS08030	0.34	-0.5
1,768,250	+		HER17_RS08030	0.34	+0.1
1,768,250	+		HER17_RS08030	0.34	-0.9
1,768,251	-		HER17_RS08030	0.34	-0.2
1,768,251	-		HER17_RS08030	0.34	+1.0
1,768,322	+		HER17_RS08030	0.47	+1.3
1,768,323	-		HER17_RS08030	0.47	+1.6
1,768,388	+		HER17_RS08030	0.59	+0.4
1,768,391	+		HER17_RS08030	0.59	+0.3
1,768,391	+		HER17_RS08030	0.59	+0.8
1,768,391	+		HER17_RS08030	0.59	+0.6
1,768,392	-		HER17_RS08030	0.60	+0.5
1,768,392	-		HER17_RS08030	0.60	+1.1
1,768,392	-		HER17_RS08030	0.60	-1.8
1,768,397	+		HER17_RS08030	0.60	+1.0
1,768,448	-		HER17_RS08030	0.70	-0.2
1,768,448	-		HER17_RS08030	0.70	+1.4
1,768,484	+		HER17_RS08030	0.76	-1.2
1,768,488	-		HER17_RS08030	0.77	-0.5
1,768,561	-				+1.6
1,768,599	-				-1.6
1,768,673	+				+2.6
1,768,676	+				+0.2
1,768,682	+				-1.1
1,768,686	-				-2.1
1,768,724	+				-0.1
1,768,724	+				+0.6
1,768,724	+				+0.4
1,768,725	-				+0.2
1,768,725	-				-2.8
1,768,725	-				+0.4
1,768,725	-				-2.1
1,768,725	-				+0.9
1,768,726	+				-1.2
1,768,726	+				-0.1
1,768,726	+				-0.2
1,768,727	-				+0.5
1,768,727	-				-0.2
1,768,727	-				+2.6
1,768,727	-				-0.1
1,768,727	-				-1.0
1,768,727	-				+1.7
1,768,727	-				-0.4
1,768,727	-				-0.6
1,768,727	-				-1.8
1,768,727	-				+0.5
1,768,779	+				-0.8
1,768,780	-				+0.5
1,768,928	+		HER17_RS08035	0.18	-1.7
1,768,954	+		HER17_RS08035	0.20	-1.4
1,768,954	+		HER17_RS08035	0.20	+0.8
1,768,954	+		HER17_RS08035	0.20	-3.4
1,768,955	-		HER17_RS08035	0.20	+0.3
1,768,958	+		HER17_RS08035	0.20	+0.6
1,768,958	+		HER17_RS08035	0.20	-2.1
1,769,008	+		HER17_RS08035	0.24	+0.2
1,769,008	+		HER17_RS08035	0.24	+0.0
1,769,145	+		HER17_RS08035	0.33	+1.1
1,769,292	+		HER17_RS08035	0.43	+1.2
1,769,313	+		HER17_RS08035	0.45	+0.1
1,769,314	-		HER17_RS08035	0.45	-0.1
1,769,314	-		HER17_RS08035	0.45	-0.9
1,769,314	-		HER17_RS08035	0.45	+1.5
1,769,333	-		HER17_RS08035	0.46	+0.7
1,769,333	-		HER17_RS08035	0.46	-0.2
1,769,338	+		HER17_RS08035	0.46	+1.4
1,769,339	-		HER17_RS08035	0.46	+0.2
1,769,343	+		HER17_RS08035	0.47	-0.1
1,769,344	-		HER17_RS08035	0.47	-0.8
1,769,344	-		HER17_RS08035	0.47	+0.2
1,769,402	-		HER17_RS08035	0.51	-0.7
1,769,465	+		HER17_RS08035	0.55	-1.2
1,769,465	+		HER17_RS08035	0.55	+1.3
1,769,466	-		HER17_RS08035	0.55	+0.9
1,769,466	-		HER17_RS08035	0.55	-0.2
1,769,467	+		HER17_RS08035	0.55	+0.2
1,769,550	-		HER17_RS08035	0.61	+0.1
1,769,573	-		HER17_RS08035	0.62	-0.2
1,769,596	-		HER17_RS08035	0.64	-0.5
1,769,596	-		HER17_RS08035	0.64	+0.5
1,769,596	-		HER17_RS08035	0.64	+0.7
1,769,596	-		HER17_RS08035	0.64	-1.9
1,769,782	-		HER17_RS08035	0.77	-1.1
1,769,862	-		HER17_RS08035	0.82	-1.8
1,769,881	+		HER17_RS08035	0.84	-2.1
1,769,882	-		HER17_RS08035	0.84	+0.8
1,769,882	-		HER17_RS08035	0.84	+0.8
1,770,140	+				+0.3
1,770,147	-				+0.2
1,770,147	-				-0.4
1,770,160	+				-2.3
1,770,161	-				-1.1
1,770,161	-				-0.3
1,770,269	+				-0.4
1,770,304	+				+0.1
1,770,356	-				+0.8
1,770,357	+				+0.9
1,770,357	+				-2.1
1,770,357	+				-0.6
1,770,357	+				-0.2
1,770,357	+				+0.7
1,770,357	+				-2.8
1,770,357	+				-0.4
1,770,358	-				+1.3
1,770,358	-				+0.5
1,770,358	-				-0.8
1,770,358	-				+1.2
1,770,363	-				-0.6
1,770,363	-				-1.2
1,770,366	+				+1.0
1,770,367	-				+0.8
1,770,381	-				+0.7
1,770,404	+				+0.5
1,770,467	+				+0.4
1,770,488	+				+1.3
1,770,489	-				+0.2
1,770,514	-				+0.7
1,770,713	-				+0.8
1,770,904	-				+0.6
1,770,909	+				+0.2
1,770,923	+				+1.3
1,770,995	+		HER17_RS21870	0.34	+1.1
1,771,094	-		HER17_RS08040	0.16	+1.2