Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06285

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
1,391,046	+		HER17_RS06280	0.42	+1.8
1,391,046	+		HER17_RS06280	0.42	+1.9
1,391,046	+		HER17_RS06280	0.42	+1.6
1,391,046	+		HER17_RS06280	0.42	+0.3
1,391,046	+		HER17_RS06280	0.42	+0.1
1,391,046	+		HER17_RS06280	0.42	+0.0
1,391,046	+		HER17_RS06280	0.42	-1.3
1,391,046	+		HER17_RS06280	0.42	+0.9
1,391,046	+		HER17_RS06280	0.42	+0.3
1,391,046	+		HER17_RS06280	0.42	-1.1
1,391,047	-		HER17_RS06280	0.42	-1.7
1,391,047	-		HER17_RS06280	0.42	-0.3
1,391,079	+		HER17_RS06280	0.45	+0.6
1,391,080	-		HER17_RS06280	0.45	+0.1
1,391,110	+		HER17_RS06280	0.47	-1.7
1,391,110	+		HER17_RS06280	0.47	+0.9
1,391,227	+		HER17_RS06280	0.56	+0.9
1,391,228	-		HER17_RS06280	0.56	+1.9
1,391,228	-		HER17_RS06280	0.56	+1.2
1,391,287	-		HER17_RS06280	0.60	+0.0
1,391,313	+		HER17_RS06280	0.62	+0.5
1,391,313	+		HER17_RS06280	0.62	+0.0
1,391,314	-		HER17_RS06280	0.62	-0.1
1,391,527	+		HER17_RS06280	0.78	+0.6
1,391,710	+				+0.0
1,391,731	-				+1.0
1,391,767	-				-0.7
1,391,785	+				-3.6
1,391,797	+				+0.2
1,391,833	+				+1.2
1,391,833	+				-0.6
1,391,834	-				+0.2
1,391,834	-				-0.6
1,391,834	-				-0.9
1,391,882	-				+1.9
1,391,907	-				+0.5
1,391,907	-				-0.1
1,391,912	+				-0.7
1,391,922	+				-2.4
1,391,922	+				-0.3
1,391,959	-				+0.4
1,391,994	+				-0.2
1,392,033	+				-0.1
1,392,033	+				-0.4
1,392,033	+				-0.1
1,392,034	-				+0.4
1,392,034	-				-1.3
1,392,034	-				-0.6
1,392,034	-				-1.6
1,392,041	+				-0.6
1,392,041	+				-0.1
1,392,041	+				-1.7
1,392,041	+				-0.5
1,392,041	+				+1.4
1,392,042	-				+0.7
1,392,045	-				-2.7
1,392,051	+				+1.2
1,392,095	+				-3.0
1,392,098	-				-0.5
1,392,098	-				-2.1
1,392,098	-				-0.6
1,392,155	+		HER17_RS06285	0.12	+1.0
1,392,155	+		HER17_RS06285	0.12	+0.6
1,392,156	-		HER17_RS06285	0.12	+0.0
1,392,158	+		HER17_RS06285	0.12	+0.1
1,392,159	-		HER17_RS06285	0.12	-1.8
1,392,212	+		HER17_RS06285	0.18	+1.2
1,392,212	+		HER17_RS06285	0.18	+1.3
1,392,213	-		HER17_RS06285	0.18	+0.6
1,392,227	+		HER17_RS06285	0.19	-0.6
1,392,228	-		HER17_RS06285	0.19	+2.2
1,392,228	-		HER17_RS06285	0.19	+0.5
1,392,267	+		HER17_RS06285	0.23	-1.6
1,392,268	-		HER17_RS06285	0.23	-0.1
1,392,288	-		HER17_RS06285	0.26	+0.8
1,392,357	+		HER17_RS06285	0.33	+0.6
1,392,357	+		HER17_RS06285	0.33	-1.0
1,392,357	+		HER17_RS06285	0.33	+1.8
1,392,357	+		HER17_RS06285	0.33	+0.8
1,392,358	-		HER17_RS06285	0.33	+1.3
1,392,359	+		HER17_RS06285	0.33	+0.0
1,392,359	+		HER17_RS06285	0.33	+0.2
1,392,359	+		HER17_RS06285	0.33	-2.3
1,392,359	+		HER17_RS06285	0.33	+0.7
1,392,360	-		HER17_RS06285	0.33	+0.5
1,392,360	-		HER17_RS06285	0.33	-0.6
1,392,360	-		HER17_RS06285	0.33	+1.3
1,392,360	-		HER17_RS06285	0.33	+0.6
1,392,360	-		HER17_RS06285	0.33	+0.7
1,392,427	-		HER17_RS06285	0.40	-0.4
1,392,428	+		HER17_RS06285	0.40	-2.0
1,392,428	+		HER17_RS06285	0.40	+0.4
1,392,428	+		HER17_RS06285	0.40	-1.0
1,392,429	-		HER17_RS06285	0.40	+0.8
1,392,429	-		HER17_RS06285	0.40	-0.1
1,392,429	-		HER17_RS06285	0.40	+0.2
1,392,459	+		HER17_RS06285	0.43	-0.4
1,392,461	+		HER17_RS06285	0.44	-1.3
1,392,461	+		HER17_RS06285	0.44	+0.8
1,392,462	-		HER17_RS06285	0.44	-0.7
1,392,462	-		HER17_RS06285	0.44	-0.5
1,392,462	-		HER17_RS06285	0.44	+0.4
1,392,462	-		HER17_RS06285	0.44	-0.2
1,392,606	+		HER17_RS06285	0.59	+1.1
1,392,687	-		HER17_RS06285	0.67	-0.8
1,392,701	+		HER17_RS06285	0.69	+0.8
1,392,701	+		HER17_RS06285	0.69	-1.3
1,392,701	+		HER17_RS06285	0.69	-1.0
1,392,702	-		HER17_RS06285	0.69	-0.5
1,392,702	-		HER17_RS06285	0.69	-0.2
1,392,702	-		HER17_RS06285	0.69	+0.4
1,392,702	-		HER17_RS06285	0.69	+1.4
1,392,707	-		HER17_RS06285	0.69	-0.5
1,392,858	-		HER17_RS06285	0.85	+0.0
1,392,992	-				-0.3
1,393,002	+				+0.7
1,393,002	+				-0.0
1,393,003	-				+0.4
1,393,003	-				+1.2
1,393,003	-				-2.3
1,393,072	+				-2.0
1,393,075	+				+0.6
1,393,076	-				-1.3
1,393,076	-				+0.7
1,393,080	+				+0.6
1,393,080	+				-1.0
1,393,080	+				-0.0
1,393,095	-				+0.7
1,393,095	-				-0.1
1,393,095	-				+1.6
1,393,179	+				+0.0
1,393,180	-				+0.6
1,393,180	-				+0.2
1,393,189	+				-1.2
1,393,190	-				+0.2
1,393,190	-				+0.7
1,393,200	+				+1.3
1,393,201	-				-0.1
1,393,201	-				-0.1
1,393,262	+				-2.0
1,393,263	-				-0.6
1,393,280	+				-0.3
1,393,280	+				-1.1
1,393,280	+				-0.7
1,393,366	+				-1.4
1,393,367	-				-0.6
1,393,367	-				-3.3
1,393,367	-				+0.2
1,393,397	+				-0.4
1,393,397	+				+0.7
1,393,398	-				+1.0
1,393,442	+		HER17_RS06290	0.13	-0.9
1,393,582	+		HER17_RS06290	0.38	+1.3
1,393,583	-		HER17_RS06290	0.39	+0.4
1,393,583	-		HER17_RS06290	0.39	-0.3
1,393,584	+		HER17_RS06290	0.39	-1.2
1,393,584	+		HER17_RS06290	0.39	-0.4
1,393,584	+		HER17_RS06290	0.39	-1.4
1,393,584	+		HER17_RS06290	0.39	+0.3
1,393,585	-		HER17_RS06290	0.39	-3.1
1,393,585	-		HER17_RS06290	0.39	-0.4
1,393,825	+		HER17_RS06290	0.82	+1.6
1,393,826	-		HER17_RS06290	0.83	+0.7
1,393,826	-		HER17_RS06290	0.83	+0.5
1,393,977	-				+1.6
1,393,977	-				+0.7
1,394,000	-				+1.7