Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21900 and HER17_RS03690 are separated by 55 nucleotides HER17_RS03690 and HER17_RS03695 overlap by 13 nucleotides HER17_RS03695 and HER17_RS03700 are separated by 107 nucleotides
HER17_RS21900: HER17_RS21900 - hypothetical protein, at 837,912 to 838,199
_RS21900
HER17_RS03690: HER17_RS03690 - DsbA family protein, at 838,255 to 838,911
_RS03690
HER17_RS03695: HER17_RS03695 - MBL fold metallo-hydrolase, at 838,899 to 839,780
_RS03695
HER17_RS03700: HER17_RS03700 - LysR family transcriptional regulator, at 839,888 to 840,796
_RS03700
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 837.900 kb on + strand at 837.901 kb on - strand at 837.928 kb on + strand at 837.929 kb on - strand at 837.929 kb on - strand at 837.931 kb on + strand at 837.932 kb on - strand at 837.937 kb on + strand at 837.937 kb on + strand at 837.938 kb on - strand at 837.938 kb on - strand at 837.944 kb on - strand, within HER17_RS21900 at 837.944 kb on - strand, within HER17_RS21900 at 837.944 kb on - strand, within HER17_RS21900 at 837.947 kb on - strand, within HER17_RS21900 at 837.947 kb on - strand, within HER17_RS21900 at 837.987 kb on - strand, within HER17_RS21900 at 838.016 kb on + strand, within HER17_RS21900 at 838.049 kb on + strand, within HER17_RS21900 at 838.049 kb on + strand, within HER17_RS21900 at 838.051 kb on + strand, within HER17_RS21900 at 838.052 kb on - strand, within HER17_RS21900 at 838.057 kb on + strand, within HER17_RS21900 at 838.057 kb on + strand, within HER17_RS21900 at 838.075 kb on + strand, within HER17_RS21900 at 838.107 kb on + strand, within HER17_RS21900 at 838.131 kb on + strand, within HER17_RS21900 at 838.131 kb on + strand, within HER17_RS21900 at 838.132 kb on - strand, within HER17_RS21900 at 838.132 kb on - strand, within HER17_RS21900 at 838.132 kb on - strand, within HER17_RS21900 at 838.156 kb on + strand, within HER17_RS21900 at 838.156 kb on + strand, within HER17_RS21900 at 838.156 kb on + strand, within HER17_RS21900 at 838.156 kb on + strand, within HER17_RS21900 at 838.156 kb on + strand, within HER17_RS21900 at 838.157 kb on - strand, within HER17_RS21900 at 838.157 kb on - strand, within HER17_RS21900 at 838.157 kb on - strand, within HER17_RS21900 at 838.197 kb on + strand at 838.197 kb on + strand at 838.197 kb on + strand at 838.198 kb on - strand at 838.234 kb on + strand at 838.319 kb on + strand at 838.320 kb on - strand at 838.393 kb on + strand, within HER17_RS03690 at 838.405 kb on + strand, within HER17_RS03690 at 838.453 kb on - strand, within HER17_RS03690 at 838.513 kb on + strand, within HER17_RS03690 at 838.513 kb on + strand, within HER17_RS03690 at 838.514 kb on - strand, within HER17_RS03690 at 838.514 kb on - strand, within HER17_RS03690 at 838.514 kb on - strand, within HER17_RS03690 at 838.551 kb on - strand, within HER17_RS03690 at 838.551 kb on - strand, within HER17_RS03690 at 838.551 kb on - strand, within HER17_RS03690 at 838.676 kb on + strand, within HER17_RS03690 at 838.677 kb on - strand, within HER17_RS03690 at 838.679 kb on + strand, within HER17_RS03690 at 838.679 kb on + strand, within HER17_RS03690 at 838.680 kb on - strand, within HER17_RS03690 at 838.680 kb on - strand, within HER17_RS03690 at 838.739 kb on + strand, within HER17_RS03690 at 838.739 kb on + strand, within HER17_RS03690 at 838.739 kb on + strand, within HER17_RS03690 at 838.740 kb on - strand, within HER17_RS03690 at 838.740 kb on - strand, within HER17_RS03690 at 838.788 kb on + strand, within HER17_RS03690 at 838.859 kb on + strand at 838.883 kb on + strand at 838.883 kb on + strand at 838.889 kb on + strand at 838.889 kb on + strand at 838.889 kb on + strand at 838.889 kb on + strand at 838.890 kb on - strand at 838.890 kb on - strand at 838.890 kb on - strand at 838.890 kb on - strand at 838.890 kb on - strand at 838.890 kb on - strand at 838.900 kb on + strand at 838.900 kb on + strand at 838.900 kb on + strand at 838.901 kb on - strand at 839.043 kb on - strand, within HER17_RS03695 at 839.050 kb on + strand, within HER17_RS03695 at 839.050 kb on + strand, within HER17_RS03695 at 839.051 kb on - strand, within HER17_RS03695 at 839.084 kb on - strand, within HER17_RS03695 at 839.228 kb on + strand, within HER17_RS03695 at 839.229 kb on - strand, within HER17_RS03695 at 839.239 kb on - strand, within HER17_RS03695 at 839.266 kb on + strand, within HER17_RS03695 at 839.267 kb on - strand, within HER17_RS03695 at 839.267 kb on - strand, within HER17_RS03695 at 839.487 kb on - strand, within HER17_RS03695 at 839.487 kb on - strand, within HER17_RS03695 at 839.506 kb on + strand, within HER17_RS03695 at 839.506 kb on + strand, within HER17_RS03695 at 839.506 kb on + strand, within HER17_RS03695 at 839.507 kb on - strand, within HER17_RS03695 at 839.507 kb on - strand, within HER17_RS03695 at 839.531 kb on + strand, within HER17_RS03695 at 839.533 kb on + strand, within HER17_RS03695 at 839.533 kb on + strand, within HER17_RS03695 at 839.534 kb on - strand, within HER17_RS03695 at 839.594 kb on + strand, within HER17_RS03695 at 839.664 kb on + strand, within HER17_RS03695 at 839.664 kb on + strand, within HER17_RS03695 at 839.664 kb on + strand, within HER17_RS03695 at 839.665 kb on - strand, within HER17_RS03695 at 839.665 kb on - strand, within HER17_RS03695 at 839.665 kb on - strand, within HER17_RS03695 at 839.684 kb on + strand, within HER17_RS03695 at 839.685 kb on - strand, within HER17_RS03695 at 839.774 kb on + strand at 839.774 kb on + strand at 839.775 kb on - strand at 839.775 kb on - strand at 839.786 kb on + strand at 839.786 kb on + strand at 839.787 kb on - strand at 839.798 kb on - strand at 839.798 kb on - strand at 839.798 kb on - strand at 839.821 kb on - strand at 839.896 kb on + strand at 839.896 kb on + strand at 839.897 kb on - strand at 839.897 kb on - strand at 839.897 kb on - strand at 839.897 kb on - strand at 839.923 kb on + strand at 839.923 kb on + strand at 839.926 kb on + strand at 839.926 kb on + strand at 839.926 kb on + strand at 839.926 kb on + strand at 839.926 kb on + strand at 839.926 kb on + strand at 839.927 kb on - strand at 839.927 kb on - strand at 839.927 kb on - strand at 839.927 kb on - strand at 839.928 kb on + strand at 839.928 kb on + strand at 839.928 kb on + strand at 839.928 kb on + strand at 839.928 kb on + strand at 839.928 kb on + strand at 839.928 kb on + strand at 839.929 kb on - strand at 839.929 kb on - strand at 840.100 kb on + strand, within HER17_RS03700 at 840.100 kb on + strand, within HER17_RS03700 at 840.101 kb on - strand, within HER17_RS03700 at 840.101 kb on - strand, within HER17_RS03700 at 840.101 kb on - strand, within HER17_RS03700 at 840.271 kb on + strand, within HER17_RS03700 at 840.302 kb on - strand, within HER17_RS03700 at 840.398 kb on + strand, within HER17_RS03700 at 840.415 kb on + strand, within HER17_RS03700 at 840.415 kb on + strand, within HER17_RS03700 at 840.449 kb on - strand, within HER17_RS03700 at 840.449 kb on - strand, within HER17_RS03700 at 840.461 kb on + strand, within HER17_RS03700 at 840.462 kb on - strand, within HER17_RS03700 at 840.462 kb on - strand, within HER17_RS03700 at 840.462 kb on - strand, within HER17_RS03700 at 840.462 kb on - strand, within HER17_RS03700 at 840.467 kb on + strand, within HER17_RS03700 at 840.467 kb on + strand, within HER17_RS03700 at 840.467 kb on + strand, within HER17_RS03700 at 840.467 kb on + strand, within HER17_RS03700 at 840.467 kb on + strand, within HER17_RS03700 at 840.467 kb on + strand, within HER17_RS03700 at 840.468 kb on - strand, within HER17_RS03700 at 840.515 kb on - strand, within HER17_RS03700 at 840.663 kb on - strand, within HER17_RS03700 at 840.686 kb on + strand, within HER17_RS03700 at 840.686 kb on + strand, within HER17_RS03700 at 840.687 kb on - strand, within HER17_RS03700 at 840.691 kb on + strand, within HER17_RS03700 at 840.691 kb on + strand, within HER17_RS03700 at 840.692 kb on - strand, within HER17_RS03700 at 840.692 kb on - strand, within HER17_RS03700 at 840.695 kb on + strand, within HER17_RS03700 at 840.695 kb on + strand, within HER17_RS03700 at 840.695 kb on + strand, within HER17_RS03700 at 840.695 kb on + strand, within HER17_RS03700 at 840.696 kb on - strand, within HER17_RS03700 at 840.696 kb on - strand, within HER17_RS03700 at 840.696 kb on - strand, within HER17_RS03700 at 840.696 kb on - strand, within HER17_RS03700 at 840.696 kb on - strand, within HER17_RS03700
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 837,900 + +2.2 837,901 - -0.0 837,928 + +0.9 837,929 - -0.0 837,929 - -1.4 837,931 + -0.3 837,932 - +0.5 837,937 + -3.0 837,937 + +0.5 837,938 - +0.6 837,938 - -1.2 837,944 - HER17_RS21900 0.11 +0.4 837,944 - HER17_RS21900 0.11 +0.1 837,944 - HER17_RS21900 0.11 -1.2 837,947 - HER17_RS21900 0.12 +1.2 837,947 - HER17_RS21900 0.12 +0.2 837,987 - HER17_RS21900 0.26 +2.0 838,016 + HER17_RS21900 0.36 +0.2 838,049 + HER17_RS21900 0.48 -0.2 838,049 + HER17_RS21900 0.48 +0.7 838,051 + HER17_RS21900 0.48 -1.0 838,052 - HER17_RS21900 0.49 -0.6 838,057 + HER17_RS21900 0.50 -0.0 838,057 + HER17_RS21900 0.50 +0.8 838,075 + HER17_RS21900 0.57 -0.6 838,107 + HER17_RS21900 0.68 +0.2 838,131 + HER17_RS21900 0.76 -0.6 838,131 + HER17_RS21900 0.76 -2.9 838,132 - HER17_RS21900 0.76 -1.2 838,132 - HER17_RS21900 0.76 +0.4 838,132 - HER17_RS21900 0.76 -1.6 838,156 + HER17_RS21900 0.85 -0.2 838,156 + HER17_RS21900 0.85 -3.2 838,156 + HER17_RS21900 0.85 +0.8 838,156 + HER17_RS21900 0.85 -1.4 838,156 + HER17_RS21900 0.85 -0.5 838,157 - HER17_RS21900 0.85 +0.6 838,157 - HER17_RS21900 0.85 -2.3 838,157 - HER17_RS21900 0.85 +0.3 838,197 + +0.1 838,197 + -1.4 838,197 + -0.7 838,198 - +0.8 838,234 + +1.3 838,319 + -3.0 838,320 - -0.5 838,393 + HER17_RS03690 0.21 +0.4 838,405 + HER17_RS03690 0.23 +1.7 838,453 - HER17_RS03690 0.30 +0.3 838,513 + HER17_RS03690 0.39 +0.7 838,513 + HER17_RS03690 0.39 +0.3 838,514 - HER17_RS03690 0.39 -0.3 838,514 - HER17_RS03690 0.39 +1.0 838,514 - HER17_RS03690 0.39 -0.3 838,551 - HER17_RS03690 0.45 -1.1 838,551 - HER17_RS03690 0.45 -0.4 838,551 - HER17_RS03690 0.45 -0.2 838,676 + HER17_RS03690 0.64 -0.4 838,677 - HER17_RS03690 0.64 +0.6 838,679 + HER17_RS03690 0.65 +2.1 838,679 + HER17_RS03690 0.65 +1.0 838,680 - HER17_RS03690 0.65 -0.2 838,680 - HER17_RS03690 0.65 -0.6 838,739 + HER17_RS03690 0.74 +1.0 838,739 + HER17_RS03690 0.74 -1.1 838,739 + HER17_RS03690 0.74 +0.1 838,740 - HER17_RS03690 0.74 -1.2 838,740 - HER17_RS03690 0.74 +0.1 838,788 + HER17_RS03690 0.81 +0.1 838,859 + -0.6 838,883 + -0.2 838,883 + +0.2 838,889 + +0.8 838,889 + +1.1 838,889 + -0.9 838,889 + +2.2 838,890 - -2.7 838,890 - +0.9 838,890 - -2.2 838,890 - +1.8 838,890 - +1.1 838,890 - -1.0 838,900 + +0.8 838,900 + +0.6 838,900 + -0.8 838,901 - +1.4 839,043 - HER17_RS03695 0.16 -0.1 839,050 + HER17_RS03695 0.17 -3.4 839,050 + HER17_RS03695 0.17 -1.9 839,051 - HER17_RS03695 0.17 -0.2 839,084 - HER17_RS03695 0.21 -2.3 839,228 + HER17_RS03695 0.37 -1.0 839,229 - HER17_RS03695 0.37 +0.3 839,239 - HER17_RS03695 0.39 -0.6 839,266 + HER17_RS03695 0.42 +1.9 839,267 - HER17_RS03695 0.42 -0.5 839,267 - HER17_RS03695 0.42 -0.3 839,487 - HER17_RS03695 0.67 +1.0 839,487 - HER17_RS03695 0.67 +0.6 839,506 + HER17_RS03695 0.69 +1.1 839,506 + HER17_RS03695 0.69 +1.1 839,506 + HER17_RS03695 0.69 -0.1 839,507 - HER17_RS03695 0.69 +0.7 839,507 - HER17_RS03695 0.69 +0.5 839,531 + HER17_RS03695 0.72 -0.6 839,533 + HER17_RS03695 0.72 -0.0 839,533 + HER17_RS03695 0.72 -0.1 839,534 - HER17_RS03695 0.72 -1.3 839,594 + HER17_RS03695 0.79 +0.2 839,664 + HER17_RS03695 0.87 +1.1 839,664 + HER17_RS03695 0.87 -0.5 839,664 + HER17_RS03695 0.87 +0.4 839,665 - HER17_RS03695 0.87 -0.1 839,665 - HER17_RS03695 0.87 +2.0 839,665 - HER17_RS03695 0.87 -1.7 839,684 + HER17_RS03695 0.89 +3.1 839,685 - HER17_RS03695 0.89 +0.6 839,774 + +0.8 839,774 + +0.7 839,775 - +0.2 839,775 - -0.4 839,786 + -0.2 839,786 + -1.7 839,787 - +0.6 839,798 - -1.9 839,798 - -0.0 839,798 - +0.0 839,821 - -2.2 839,896 + +0.9 839,896 + -3.0 839,897 - +0.5 839,897 - -0.9 839,897 - +1.0 839,897 - -1.0 839,923 + -2.6 839,923 + +0.0 839,926 + +1.5 839,926 + +0.6 839,926 + +0.1 839,926 + +0.3 839,926 + -0.9 839,926 + -0.5 839,927 - +0.8 839,927 - +0.2 839,927 - +1.3 839,927 - +1.4 839,928 + -1.6 839,928 + +0.7 839,928 + -1.9 839,928 + -1.2 839,928 + -0.4 839,928 + -2.1 839,928 + +0.5 839,929 - -0.1 839,929 - +0.3 840,100 + HER17_RS03700 0.23 +3.0 840,100 + HER17_RS03700 0.23 -0.2 840,101 - HER17_RS03700 0.23 +1.0 840,101 - HER17_RS03700 0.23 +2.2 840,101 - HER17_RS03700 0.23 -2.6 840,271 + HER17_RS03700 0.42 +1.3 840,302 - HER17_RS03700 0.46 +0.1 840,398 + HER17_RS03700 0.56 -0.6 840,415 + HER17_RS03700 0.58 +1.1 840,415 + HER17_RS03700 0.58 -1.4 840,449 - HER17_RS03700 0.62 -0.2 840,449 - HER17_RS03700 0.62 +2.3 840,461 + HER17_RS03700 0.63 -2.5 840,462 - HER17_RS03700 0.63 +0.1 840,462 - HER17_RS03700 0.63 +0.9 840,462 - HER17_RS03700 0.63 -1.3 840,462 - HER17_RS03700 0.63 +0.5 840,467 + HER17_RS03700 0.64 +0.6 840,467 + HER17_RS03700 0.64 -2.1 840,467 + HER17_RS03700 0.64 -0.4 840,467 + HER17_RS03700 0.64 -1.3 840,467 + HER17_RS03700 0.64 +1.7 840,467 + HER17_RS03700 0.64 -0.8 840,468 - HER17_RS03700 0.64 +1.3 840,515 - HER17_RS03700 0.69 -0.5 840,663 - HER17_RS03700 0.85 -0.2 840,686 + HER17_RS03700 0.88 -0.4 840,686 + HER17_RS03700 0.88 +0.3 840,687 - HER17_RS03700 0.88 +0.2 840,691 + HER17_RS03700 0.88 +1.2 840,691 + HER17_RS03700 0.88 +0.3 840,692 - HER17_RS03700 0.88 -0.4 840,692 - HER17_RS03700 0.88 +1.4 840,695 + HER17_RS03700 0.89 +0.7 840,695 + HER17_RS03700 0.89 -1.0 840,695 + HER17_RS03700 0.89 -2.6 840,695 + HER17_RS03700 0.89 -2.2 840,696 - HER17_RS03700 0.89 +0.2 840,696 - HER17_RS03700 0.89 -0.4 840,696 - HER17_RS03700 0.89 +0.7 840,696 - HER17_RS03700 0.89 -0.3 840,696 - HER17_RS03700 0.89 +0.5
Or see this region's nucleotide sequence