Experiment: M9+glucose+arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01925 and HER17_RS01930 are separated by 125 nucleotides HER17_RS01930 and HER17_RS01935 overlap by 4 nucleotides HER17_RS01935 and HER17_RS01940 are separated by 106 nucleotides HER17_RS01940 and HER17_RS01945 are separated by 59 nucleotides
HER17_RS01925: HER17_RS01925 - phosphoribulokinase, at 451,542 to 452,411
_RS01925
HER17_RS01930: HER17_RS01930 - YheU family protein, at 452,537 to 452,773
_RS01930
HER17_RS01935: HER17_RS01935 - hydrolase, at 452,770 to 453,810
_RS01935
HER17_RS01940: HER17_RS01940 - LysE family translocator, at 453,917 to 454,519
_RS01940
HER17_RS01945: HER17_RS01945 - ABC transporter ATP-binding protein, at 454,579 to 456,486
_RS01945
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 451.784 kb on + strand, within HER17_RS01925 at 451.833 kb on - strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.843 kb on + strand, within HER17_RS01925 at 451.843 kb on + strand, within HER17_RS01925 at 451.844 kb on - strand, within HER17_RS01925 at 451.844 kb on - strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.091 kb on - strand, within HER17_RS01925 at 452.091 kb on - strand, within HER17_RS01925 at 452.093 kb on - strand, within HER17_RS01925 at 452.110 kb on + strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.114 kb on + strand, within HER17_RS01925 at 452.115 kb on - strand, within HER17_RS01925 at 452.123 kb on - strand, within HER17_RS01925 at 452.123 kb on - strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.127 kb on - strand, within HER17_RS01925 at 452.155 kb on + strand, within HER17_RS01925 at 452.210 kb on - strand, within HER17_RS01925 at 452.210 kb on - strand, within HER17_RS01925 at 452.270 kb on + strand, within HER17_RS01925 at 452.271 kb on - strand, within HER17_RS01925 at 452.272 kb on + strand, within HER17_RS01925 at 452.272 kb on + strand, within HER17_RS01925 at 452.273 kb on - strand, within HER17_RS01925 at 452.411 kb on + strand at 452.411 kb on + strand at 452.412 kb on - strand at 452.481 kb on + strand at 452.481 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.489 kb on + strand at 452.499 kb on - strand at 452.542 kb on - strand at 452.584 kb on + strand, within HER17_RS01930 at 452.584 kb on + strand, within HER17_RS01930 at 452.585 kb on - strand, within HER17_RS01930 at 452.585 kb on - strand, within HER17_RS01930 at 452.600 kb on + strand, within HER17_RS01930 at 452.600 kb on + strand, within HER17_RS01930 at 452.768 kb on - strand at 452.777 kb on - strand at 452.958 kb on + strand, within HER17_RS01935 at 452.959 kb on - strand, within HER17_RS01935 at 452.959 kb on - strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.962 kb on - strand, within HER17_RS01935 at 452.968 kb on + strand, within HER17_RS01935 at 453.042 kb on + strand, within HER17_RS01935 at 453.046 kb on + strand, within HER17_RS01935 at 453.047 kb on - strand, within HER17_RS01935 at 453.047 kb on - strand, within HER17_RS01935 at 453.056 kb on - strand, within HER17_RS01935 at 453.058 kb on + strand, within HER17_RS01935 at 453.058 kb on + strand, within HER17_RS01935 at 453.059 kb on - strand, within HER17_RS01935 at 453.073 kb on - strand, within HER17_RS01935 at 453.083 kb on + strand, within HER17_RS01935 at 453.086 kb on + strand, within HER17_RS01935 at 453.087 kb on - strand, within HER17_RS01935 at 453.123 kb on + strand, within HER17_RS01935 at 453.123 kb on + strand, within HER17_RS01935 at 453.124 kb on - strand, within HER17_RS01935 at 453.124 kb on - strand, within HER17_RS01935 at 453.146 kb on - strand, within HER17_RS01935 at 453.245 kb on + strand, within HER17_RS01935 at 453.246 kb on - strand, within HER17_RS01935 at 453.255 kb on - strand, within HER17_RS01935 at 453.289 kb on - strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.335 kb on - strand, within HER17_RS01935 at 453.339 kb on + strand, within HER17_RS01935 at 453.482 kb on + strand, within HER17_RS01935 at 453.483 kb on - strand, within HER17_RS01935 at 453.483 kb on - strand, within HER17_RS01935 at 453.483 kb on - strand, within HER17_RS01935 at 453.483 kb on - strand, within HER17_RS01935 at 453.483 kb on - strand, within HER17_RS01935 at 453.486 kb on + strand, within HER17_RS01935 at 453.486 kb on + strand, within HER17_RS01935 at 453.487 kb on - strand, within HER17_RS01935 at 453.487 kb on - strand, within HER17_RS01935 at 453.487 kb on - strand, within HER17_RS01935 at 453.487 kb on - strand, within HER17_RS01935 at 453.487 kb on - strand, within HER17_RS01935 at 453.487 kb on - strand, within HER17_RS01935 at 453.558 kb on + strand, within HER17_RS01935 at 453.558 kb on + strand, within HER17_RS01935 at 453.559 kb on - strand, within HER17_RS01935 at 453.568 kb on + strand, within HER17_RS01935 at 453.568 kb on + strand, within HER17_RS01935 at 453.584 kb on + strand, within HER17_RS01935 at 453.591 kb on + strand, within HER17_RS01935 at 453.754 kb on + strand at 453.754 kb on + strand at 453.805 kb on - strand at 453.805 kb on - strand at 453.805 kb on - strand at 453.810 kb on + strand at 453.811 kb on - strand at 453.811 kb on - strand at 453.843 kb on + strand at 453.863 kb on + strand at 453.864 kb on - strand at 453.864 kb on - strand at 453.886 kb on - strand at 453.886 kb on - strand at 453.915 kb on + strand at 453.916 kb on - strand at 453.916 kb on - strand at 453.930 kb on + strand at 453.988 kb on + strand, within HER17_RS01940 at 453.988 kb on + strand, within HER17_RS01940 at 453.989 kb on - strand, within HER17_RS01940 at 453.989 kb on - strand, within HER17_RS01940 at 453.989 kb on - strand, within HER17_RS01940 at 454.000 kb on + strand, within HER17_RS01940 at 454.001 kb on - strand, within HER17_RS01940 at 454.025 kb on - strand, within HER17_RS01940 at 454.098 kb on + strand, within HER17_RS01940 at 454.098 kb on + strand, within HER17_RS01940 at 454.098 kb on + strand, within HER17_RS01940 at 454.099 kb on - strand, within HER17_RS01940 at 454.099 kb on - strand, within HER17_RS01940 at 454.118 kb on + strand, within HER17_RS01940 at 454.119 kb on - strand, within HER17_RS01940 at 454.161 kb on - strand, within HER17_RS01940 at 454.161 kb on - strand, within HER17_RS01940 at 454.247 kb on + strand, within HER17_RS01940 at 454.248 kb on - strand, within HER17_RS01940 at 454.337 kb on + strand, within HER17_RS01940 at 454.337 kb on + strand, within HER17_RS01940 at 454.337 kb on + strand, within HER17_RS01940 at 454.337 kb on + strand, within HER17_RS01940 at 454.338 kb on - strand, within HER17_RS01940 at 454.338 kb on - strand, within HER17_RS01940 at 454.338 kb on - strand, within HER17_RS01940 at 454.338 kb on - strand, within HER17_RS01940 at 454.339 kb on + strand, within HER17_RS01940 at 454.340 kb on - strand, within HER17_RS01940 at 454.350 kb on + strand, within HER17_RS01940 at 454.359 kb on + strand, within HER17_RS01940 at 454.360 kb on - strand, within HER17_RS01940 at 454.360 kb on - strand, within HER17_RS01940 at 454.381 kb on + strand, within HER17_RS01940 at 454.444 kb on + strand, within HER17_RS01940 at 454.460 kb on - strand at 454.517 kb on + strand at 454.535 kb on + strand at 454.537 kb on + strand at 454.538 kb on - strand at 454.570 kb on - strand at 454.570 kb on - strand at 454.570 kb on - strand at 454.581 kb on - strand at 454.603 kb on + strand at 454.603 kb on + strand at 454.712 kb on + strand at 454.712 kb on + strand at 454.713 kb on - strand at 454.713 kb on - strand at 454.713 kb on - strand at 454.792 kb on + strand, within HER17_RS01945
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose+arginine remove 451,784 + HER17_RS01925 0.28 +0.0 451,833 - HER17_RS01925 0.33 -0.1 451,834 + HER17_RS01925 0.34 -1.2 451,834 + HER17_RS01925 0.34 -1.6 451,834 + HER17_RS01925 0.34 +0.2 451,834 + HER17_RS01925 0.34 -1.1 451,834 + HER17_RS01925 0.34 +0.1 451,835 - HER17_RS01925 0.34 -0.7 451,835 - HER17_RS01925 0.34 +0.6 451,835 - HER17_RS01925 0.34 -0.4 451,835 - HER17_RS01925 0.34 -0.1 451,835 - HER17_RS01925 0.34 -0.8 451,835 - HER17_RS01925 0.34 -1.3 451,835 - HER17_RS01925 0.34 -1.8 451,835 - HER17_RS01925 0.34 +0.9 451,835 - HER17_RS01925 0.34 -0.7 451,843 + HER17_RS01925 0.35 +0.4 451,843 + HER17_RS01925 0.35 -0.4 451,844 - HER17_RS01925 0.35 -1.5 451,844 - HER17_RS01925 0.35 +0.0 452,026 + HER17_RS01925 0.56 -0.4 452,026 + HER17_RS01925 0.56 +0.5 452,026 + HER17_RS01925 0.56 +0.3 452,026 + HER17_RS01925 0.56 +0.3 452,026 + HER17_RS01925 0.56 +0.5 452,027 - HER17_RS01925 0.56 -0.2 452,027 - HER17_RS01925 0.56 -1.7 452,027 - HER17_RS01925 0.56 -1.0 452,091 - HER17_RS01925 0.63 -0.4 452,091 - HER17_RS01925 0.63 -0.1 452,093 - HER17_RS01925 0.63 -0.1 452,110 + HER17_RS01925 0.65 -3.2 452,111 - HER17_RS01925 0.65 -1.8 452,111 - HER17_RS01925 0.65 -1.5 452,111 - HER17_RS01925 0.65 -0.8 452,111 - HER17_RS01925 0.65 +0.8 452,111 - HER17_RS01925 0.65 -1.3 452,114 + HER17_RS01925 0.66 -0.5 452,115 - HER17_RS01925 0.66 -2.8 452,123 - HER17_RS01925 0.67 -0.5 452,123 - HER17_RS01925 0.67 -1.5 452,126 + HER17_RS01925 0.67 -0.0 452,126 + HER17_RS01925 0.67 -0.5 452,126 + HER17_RS01925 0.67 -0.4 452,127 - HER17_RS01925 0.67 -1.8 452,155 + HER17_RS01925 0.70 +0.6 452,210 - HER17_RS01925 0.77 -1.4 452,210 - HER17_RS01925 0.77 -1.7 452,270 + HER17_RS01925 0.84 -1.2 452,271 - HER17_RS01925 0.84 -0.0 452,272 + HER17_RS01925 0.84 -0.9 452,272 + HER17_RS01925 0.84 -1.2 452,273 - HER17_RS01925 0.84 -1.5 452,411 + -0.2 452,411 + -2.2 452,412 - -1.0 452,481 + -1.9 452,481 + -0.2 452,485 + +2.0 452,485 + +0.0 452,485 + +1.6 452,485 + -0.8 452,485 + -1.7 452,485 + +0.2 452,485 + +1.2 452,485 + -0.2 452,486 - -2.8 452,486 - -0.5 452,486 - +0.4 452,486 - -0.9 452,486 - -2.0 452,486 - -0.2 452,486 - +3.6 452,486 - -0.8 452,489 + +1.3 452,499 - +0.0 452,542 - +0.8 452,584 + HER17_RS01930 0.20 -2.2 452,584 + HER17_RS01930 0.20 +0.9 452,585 - HER17_RS01930 0.20 -0.0 452,585 - HER17_RS01930 0.20 +1.5 452,600 + HER17_RS01930 0.27 +0.6 452,600 + HER17_RS01930 0.27 -2.1 452,768 - +0.6 452,777 - -0.1 452,958 + HER17_RS01935 0.18 +1.2 452,959 - HER17_RS01935 0.18 -0.1 452,959 - HER17_RS01935 0.18 -0.3 452,961 + HER17_RS01935 0.18 -0.7 452,961 + HER17_RS01935 0.18 -0.5 452,961 + HER17_RS01935 0.18 +1.0 452,962 - HER17_RS01935 0.18 -0.8 452,968 + HER17_RS01935 0.19 +0.6 453,042 + HER17_RS01935 0.26 -1.2 453,046 + HER17_RS01935 0.27 +0.2 453,047 - HER17_RS01935 0.27 -1.4 453,047 - HER17_RS01935 0.27 +0.9 453,056 - HER17_RS01935 0.27 +0.9 453,058 + HER17_RS01935 0.28 -0.5 453,058 + HER17_RS01935 0.28 +1.3 453,059 - HER17_RS01935 0.28 +1.6 453,073 - HER17_RS01935 0.29 -1.4 453,083 + HER17_RS01935 0.30 -0.2 453,086 + HER17_RS01935 0.30 +3.2 453,087 - HER17_RS01935 0.30 -1.4 453,123 + HER17_RS01935 0.34 +2.2 453,123 + HER17_RS01935 0.34 -1.2 453,124 - HER17_RS01935 0.34 +1.2 453,124 - HER17_RS01935 0.34 -1.7 453,146 - HER17_RS01935 0.36 +0.6 453,245 + HER17_RS01935 0.46 +0.1 453,246 - HER17_RS01935 0.46 +0.8 453,255 - HER17_RS01935 0.47 -0.8 453,289 - HER17_RS01935 0.50 +0.1 453,334 + HER17_RS01935 0.54 -0.8 453,334 + HER17_RS01935 0.54 +0.0 453,334 + HER17_RS01935 0.54 +1.1 453,335 - HER17_RS01935 0.54 +0.4 453,339 + HER17_RS01935 0.55 +0.3 453,482 + HER17_RS01935 0.68 +2.0 453,483 - HER17_RS01935 0.68 -0.5 453,483 - HER17_RS01935 0.68 +0.2 453,483 - HER17_RS01935 0.68 +0.1 453,483 - HER17_RS01935 0.68 -0.3 453,483 - HER17_RS01935 0.68 +2.3 453,486 + HER17_RS01935 0.69 -0.2 453,486 + HER17_RS01935 0.69 +0.5 453,487 - HER17_RS01935 0.69 +0.8 453,487 - HER17_RS01935 0.69 +0.1 453,487 - HER17_RS01935 0.69 +1.1 453,487 - HER17_RS01935 0.69 -1.8 453,487 - HER17_RS01935 0.69 +1.1 453,487 - HER17_RS01935 0.69 +0.9 453,558 + HER17_RS01935 0.76 -1.7 453,558 + HER17_RS01935 0.76 -0.6 453,559 - HER17_RS01935 0.76 +0.8 453,568 + HER17_RS01935 0.77 -2.1 453,568 + HER17_RS01935 0.77 -0.2 453,584 + HER17_RS01935 0.78 +0.1 453,591 + HER17_RS01935 0.79 -1.0 453,754 + -1.4 453,754 + -0.4 453,805 - -0.4 453,805 - +0.6 453,805 - +1.2 453,810 + +0.9 453,811 - +0.1 453,811 - -0.4 453,843 + -0.0 453,863 + -1.7 453,864 - +0.8 453,864 - -0.1 453,886 - +1.1 453,886 - -1.2 453,915 + +1.2 453,916 - +0.1 453,916 - -0.1 453,930 + +0.9 453,988 + HER17_RS01940 0.12 -0.2 453,988 + HER17_RS01940 0.12 +0.9 453,989 - HER17_RS01940 0.12 -0.3 453,989 - HER17_RS01940 0.12 -0.3 453,989 - HER17_RS01940 0.12 +1.3 454,000 + HER17_RS01940 0.14 -0.8 454,001 - HER17_RS01940 0.14 -0.7 454,025 - HER17_RS01940 0.18 +0.1 454,098 + HER17_RS01940 0.30 -0.3 454,098 + HER17_RS01940 0.30 +0.6 454,098 + HER17_RS01940 0.30 +0.5 454,099 - HER17_RS01940 0.30 +0.3 454,099 - HER17_RS01940 0.30 +1.1 454,118 + HER17_RS01940 0.33 -2.2 454,119 - HER17_RS01940 0.33 +0.6 454,161 - HER17_RS01940 0.40 +0.1 454,161 - HER17_RS01940 0.40 -0.1 454,247 + HER17_RS01940 0.55 -0.7 454,248 - HER17_RS01940 0.55 -0.5 454,337 + HER17_RS01940 0.70 +0.8 454,337 + HER17_RS01940 0.70 -0.8 454,337 + HER17_RS01940 0.70 +1.5 454,337 + HER17_RS01940 0.70 +1.0 454,338 - HER17_RS01940 0.70 +0.7 454,338 - HER17_RS01940 0.70 -0.1 454,338 - HER17_RS01940 0.70 +0.0 454,338 - HER17_RS01940 0.70 -0.0 454,339 + HER17_RS01940 0.70 -0.5 454,340 - HER17_RS01940 0.70 +0.3 454,350 + HER17_RS01940 0.72 +1.3 454,359 + HER17_RS01940 0.73 +0.3 454,360 - HER17_RS01940 0.73 +1.0 454,360 - HER17_RS01940 0.73 +1.4 454,381 + HER17_RS01940 0.77 +1.0 454,444 + HER17_RS01940 0.87 -2.4 454,460 - +0.3 454,517 + -2.6 454,535 + -1.4 454,537 + -0.9 454,538 - +0.2 454,570 - +0.6 454,570 - -0.9 454,570 - -0.6 454,581 - -0.7 454,603 + -0.4 454,603 + -1.5 454,712 + -0.0 454,712 + +1.5 454,713 - +0.2 454,713 - -0.9 454,713 - +0.9 454,792 + HER17_RS01945 0.11 -0.3
Or see this region's nucleotide sequence