Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21400

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,795,543	+		HER17_RS21395	0.63	+0.1
4,795,558	-		HER17_RS21395	0.64	+0.3
4,795,611	+		HER17_RS21395	0.67	-0.6
4,795,611	+		HER17_RS21395	0.67	-1.3
4,795,653	+		HER17_RS21395	0.69	-1.7
4,795,684	+		HER17_RS21395	0.70	-1.3
4,795,691	+		HER17_RS21395	0.70	-2.7
4,795,691	+		HER17_RS21395	0.70	-0.7
4,795,692	-		HER17_RS21395	0.70	+0.3
4,795,692	-		HER17_RS21395	0.70	-0.5
4,795,692	-		HER17_RS21395	0.70	-0.7
4,795,695	+		HER17_RS21395	0.71	+0.2
4,795,695	+		HER17_RS21395	0.71	-0.5
4,795,695	+		HER17_RS21395	0.71	-0.2
4,795,695	+		HER17_RS21395	0.71	-0.0
4,795,695	+		HER17_RS21395	0.71	+0.7
4,795,695	+		HER17_RS21395	0.71	+1.5
4,795,695	+		HER17_RS21395	0.71	-2.2
4,795,696	-		HER17_RS21395	0.71	-0.1
4,795,696	-		HER17_RS21395	0.71	-1.1
4,795,696	-		HER17_RS21395	0.71	-0.8
4,795,884	-		HER17_RS21395	0.80	-0.6
4,795,884	-		HER17_RS21395	0.80	-0.7
4,795,901	+		HER17_RS21395	0.80	-1.6
4,796,063	+		HER17_RS21395	0.88	+0.1
4,796,064	-		HER17_RS21395	0.88	-1.1
4,796,064	-		HER17_RS21395	0.88	-1.0
4,796,070	+		HER17_RS21395	0.89	-0.5
4,796,208	-				-1.3
4,796,208	-				-0.2
4,796,208	-				+0.0
4,796,293	+				+0.5
4,796,341	-				+1.5
4,796,353	-				-0.2
4,796,355	+				+0.1
4,796,432	-				+0.9
4,796,432	-				-0.3
4,796,467	+				+0.3
4,796,467	+				-0.7
4,796,467	+				+0.3
4,796,468	-				-0.5
4,796,468	-				+0.5
4,796,468	-				-0.2
4,796,468	-				-0.8
4,796,468	-				-1.0
4,796,468	-				+2.2
4,796,479	-				-1.5
4,796,539	+				+0.5
4,796,539	+				-0.4
4,796,540	-				-0.1
4,796,540	-				-1.2
4,796,652	-		HER17_RS21400	0.13	-0.5
4,796,718	+		HER17_RS21400	0.18	-0.4
4,796,719	-		HER17_RS21400	0.18	+0.7
4,796,723	+		HER17_RS21400	0.18	-1.5
4,796,723	+		HER17_RS21400	0.18	+0.5
4,796,731	-		HER17_RS21400	0.19	+0.6
4,796,731	-		HER17_RS21400	0.19	-1.2
4,796,785	-		HER17_RS21400	0.22	-2.0
4,796,806	-		HER17_RS21400	0.24	+1.0
4,796,940	+		HER17_RS21400	0.34	+0.4
4,796,941	-		HER17_RS21400	0.34	-1.3
4,796,941	-		HER17_RS21400	0.34	-0.6
4,796,941	-		HER17_RS21400	0.34	+0.3
4,796,941	-		HER17_RS21400	0.34	+0.5
4,796,941	-		HER17_RS21400	0.34	-0.4
4,796,941	-		HER17_RS21400	0.34	-1.6
4,797,036	+		HER17_RS21400	0.41	-0.7
4,797,037	-		HER17_RS21400	0.41	-0.5
4,797,039	+		HER17_RS21400	0.41	-0.3
4,797,039	+		HER17_RS21400	0.41	-0.2
4,797,040	-		HER17_RS21400	0.41	+0.4
4,797,040	-		HER17_RS21400	0.41	+0.8
4,797,040	-		HER17_RS21400	0.41	+0.5
4,797,040	-		HER17_RS21400	0.41	-1.8
4,797,040	-		HER17_RS21400	0.41	-0.2
4,797,040	-		HER17_RS21400	0.41	-0.9
4,797,065	+		HER17_RS21400	0.43	+0.7
4,797,065	+		HER17_RS21400	0.43	-0.4
4,797,066	-		HER17_RS21400	0.43	-0.2
4,797,068	+		HER17_RS21400	0.43	+1.5
4,797,068	+		HER17_RS21400	0.43	-0.4
4,797,068	+		HER17_RS21400	0.43	-0.0
4,797,069	-		HER17_RS21400	0.43	+1.3
4,797,069	-		HER17_RS21400	0.43	+0.3
4,797,069	-		HER17_RS21400	0.43	+0.1
4,797,093	+		HER17_RS21400	0.45	-0.7
4,797,093	+		HER17_RS21400	0.45	+0.7
4,797,097	-		HER17_RS21400	0.45	+0.4
4,797,097	-		HER17_RS21400	0.45	+0.6
4,797,101	+		HER17_RS21400	0.45	+0.5
4,797,102	-		HER17_RS21400	0.45	-1.4
4,797,102	-		HER17_RS21400	0.45	+0.7
4,797,105	+		HER17_RS21400	0.46	-0.1
4,797,124	+		HER17_RS21400	0.47	+0.4
4,797,232	-		HER17_RS21400	0.55	+0.6
4,797,232	-		HER17_RS21400	0.55	+1.3
4,797,318	-		HER17_RS21400	0.61	+0.3
4,797,382	+		HER17_RS21400	0.65	+0.1
4,797,382	+		HER17_RS21400	0.65	-1.3
4,797,382	+		HER17_RS21400	0.65	+0.6
4,797,383	-		HER17_RS21400	0.66	-0.5
4,797,395	+		HER17_RS21400	0.66	+1.0
4,797,450	+		HER17_RS21400	0.70	+0.1
4,797,450	+		HER17_RS21400	0.70	-0.9
4,797,460	-		HER17_RS21400	0.71	+0.0
4,797,591	+		HER17_RS21400	0.80	-0.3
4,797,592	-		HER17_RS21400	0.81	+0.9
4,797,592	-		HER17_RS21400	0.81	-1.1
4,797,636	+		HER17_RS21400	0.84	-2.0
4,797,702	+		HER17_RS21400	0.88	+0.4
4,797,703	-		HER17_RS21400	0.89	-0.2
4,797,735	-				-0.8
4,797,785	+				-0.3
4,797,835	-				+1.2
4,797,835	-				+0.5
4,797,875	+				+1.5
4,797,896	-				+0.3
4,797,896	-				+0.1
4,797,948	+				+0.0
4,797,948	+				-0.7
4,797,948	+				+1.1
4,797,948	+				+1.1
4,797,952	+				+0.3
4,797,953	-				-0.8
4,797,953	-				+0.1
4,797,979	+				+1.6
4,797,980	-				-1.5
4,797,980	-				-0.0
4,798,038	+				-0.0
4,798,078	-				-0.3
4,798,083	+				+0.5
4,798,083	+				-0.3
4,798,083	+				+0.3
4,798,083	+				+0.0
4,798,083	+				-0.9
4,798,083	+				+0.4
4,798,083	+				+0.2
4,798,084	-				-0.4
4,798,084	-				-0.8
4,798,084	-				-0.8
4,798,084	-				-1.5
4,798,084	-				+0.2
4,798,084	-				+0.1
4,798,084	-				-0.1
4,798,085	+				+0.5
4,798,085	+				-0.0
4,798,085	+				-0.6
4,798,085	+				-0.9
4,798,085	+				-0.0
4,798,085	+				+0.4
4,798,085	+				+0.1
4,798,085	+				-1.5
4,798,085	+				+0.3
4,798,085	+				+0.2
4,798,085	+				-0.5
4,798,085	+				+1.5
4,798,086	-				+0.1
4,798,086	-				+0.3
4,798,089	+				-0.2
4,798,089	+				-0.0
4,798,089	+				-0.5
4,798,089	+				+2.3
4,798,089	+				+0.2
4,798,089	+				-1.0
4,798,089	+				+0.4
4,798,089	+				-0.5
4,798,089	+				-0.1
4,798,089	+				+0.0
4,798,089	+				+0.1
4,798,089	+				-0.7
4,798,089	+				+0.4
4,798,090	-				+0.0
4,798,090	-				-0.2
4,798,090	-				-0.4
4,798,090	-				-1.8
4,798,090	-				-0.1
4,798,090	-				-0.4
4,798,090	-				+0.2
4,798,090	-				-0.1
4,798,090	-				+0.6
4,798,090	-				+0.3
4,798,090	-				+1.5
4,798,090	-				-0.2
4,798,090	-				+0.9
4,798,090	-				+0.5
4,798,092	+				-0.6
4,798,092	+				+0.1
4,798,093	-				+0.9
4,798,093	-				-0.8
4,798,123	-				+0.0
4,798,126	+				+0.5
4,798,126	+				-0.9
4,798,126	+				+1.0
4,798,127	-				+0.4
4,798,127	-				+0.1
4,798,127	-				+0.8
4,798,175	-				+0.5
4,798,201	+		HER17_RS21405	0.11	+0.3
4,798,201	+		HER17_RS21405	0.11	-0.0
4,798,202	-		HER17_RS21405	0.11	+1.7
4,798,389	+		HER17_RS21405	0.22	+0.7
4,798,389	+		HER17_RS21405	0.22	+0.5
4,798,389	+		HER17_RS21405	0.22	-0.4
4,798,389	+		HER17_RS21405	0.22	+0.6
4,798,390	-		HER17_RS21405	0.22	-0.3
4,798,490	+		HER17_RS21405	0.28	+0.1
4,798,804	+		HER17_RS21405	0.46	+0.6