Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21070 and HER17_RS21075 are separated by 28 nucleotides HER17_RS21075 and HER17_RS21080 are separated by 116 nucleotides
HER17_RS21070: HER17_RS21070 - sugar ABC transporter permease, at 4,712,873 to 4,714,003
_RS21070
HER17_RS21075: HER17_RS21075 - xylose ABC transporter ATP-binding protein, at 4,714,032 to 4,715,573
_RS21075
HER17_RS21080: HER17_RS21080 - D-xylose ABC transporter substrate-binding protein, at 4,715,690 to 4,716,685
_RS21080
Position (kb) 4714
4715
4716 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4713.250 kb on - strand, within HER17_RS21070 at 4713.250 kb on - strand, within HER17_RS21070 at 4713.250 kb on - strand, within HER17_RS21070 at 4713.357 kb on + strand, within HER17_RS21070 at 4713.423 kb on - strand, within HER17_RS21070 at 4713.434 kb on + strand, within HER17_RS21070 at 4713.475 kb on + strand, within HER17_RS21070 at 4713.486 kb on - strand, within HER17_RS21070 at 4713.505 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.529 kb on - strand, within HER17_RS21070 at 4713.529 kb on - strand, within HER17_RS21070 at 4713.776 kb on + strand, within HER17_RS21070 at 4713.820 kb on + strand, within HER17_RS21070 at 4713.821 kb on - strand, within HER17_RS21070 at 4713.835 kb on + strand, within HER17_RS21070 at 4713.903 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.922 kb on - strand at 4713.922 kb on - strand at 4713.922 kb on - strand at 4713.966 kb on + strand at 4713.966 kb on + strand at 4713.967 kb on - strand at 4713.967 kb on - strand at 4713.967 kb on - strand at 4713.967 kb on - strand at 4714.219 kb on - strand, within HER17_RS21075 at 4714.238 kb on + strand, within HER17_RS21075 at 4714.238 kb on + strand, within HER17_RS21075 at 4714.238 kb on + strand, within HER17_RS21075 at 4714.240 kb on + strand, within HER17_RS21075 at 4714.240 kb on + strand, within HER17_RS21075 at 4714.240 kb on + strand, within HER17_RS21075 at 4714.250 kb on - strand, within HER17_RS21075 at 4714.250 kb on - strand, within HER17_RS21075 at 4714.262 kb on + strand, within HER17_RS21075 at 4714.322 kb on + strand, within HER17_RS21075 at 4714.535 kb on + strand, within HER17_RS21075 at 4714.535 kb on + strand, within HER17_RS21075 at 4714.535 kb on + strand, within HER17_RS21075 at 4714.536 kb on - strand, within HER17_RS21075 at 4714.536 kb on - strand, within HER17_RS21075 at 4714.604 kb on + strand, within HER17_RS21075 at 4714.604 kb on + strand, within HER17_RS21075 at 4714.604 kb on + strand, within HER17_RS21075 at 4714.605 kb on - strand, within HER17_RS21075 at 4714.605 kb on - strand, within HER17_RS21075 at 4714.613 kb on + strand, within HER17_RS21075 at 4714.613 kb on + strand, within HER17_RS21075 at 4714.614 kb on - strand, within HER17_RS21075 at 4714.674 kb on - strand, within HER17_RS21075 at 4714.755 kb on - strand, within HER17_RS21075 at 4714.797 kb on + strand, within HER17_RS21075 at 4714.801 kb on - strand, within HER17_RS21075 at 4714.982 kb on + strand, within HER17_RS21075 at 4714.983 kb on - strand, within HER17_RS21075 at 4714.984 kb on + strand, within HER17_RS21075 at 4714.984 kb on + strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4715.139 kb on + strand, within HER17_RS21075 at 4715.140 kb on - strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.215 kb on + strand, within HER17_RS21075 at 4715.215 kb on + strand, within HER17_RS21075 at 4715.215 kb on + strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.228 kb on - strand, within HER17_RS21075 at 4715.351 kb on + strand, within HER17_RS21075 at 4715.351 kb on + strand, within HER17_RS21075 at 4715.351 kb on + strand, within HER17_RS21075 at 4715.352 kb on - strand, within HER17_RS21075 at 4715.352 kb on - strand, within HER17_RS21075 at 4715.365 kb on - strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.399 kb on - strand, within HER17_RS21075 at 4715.399 kb on - strand, within HER17_RS21075 at 4715.399 kb on - strand, within HER17_RS21075 at 4715.511 kb on - strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.658 kb on + strand at 4715.659 kb on - strand at 4715.659 kb on - strand at 4715.672 kb on + strand at 4715.672 kb on + strand at 4715.673 kb on - strand at 4715.691 kb on + strand at 4715.692 kb on - strand at 4715.694 kb on + strand at 4715.694 kb on + strand at 4715.694 kb on + strand at 4715.695 kb on - strand at 4715.695 kb on - strand at 4715.695 kb on - strand at 4715.753 kb on - strand at 4715.775 kb on - strand at 4715.787 kb on - strand at 4715.787 kb on - strand at 4715.788 kb on + strand at 4715.788 kb on + strand at 4715.894 kb on - strand, within HER17_RS21080 at 4715.895 kb on + strand, within HER17_RS21080 at 4715.896 kb on - strand, within HER17_RS21080 at 4716.055 kb on + strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.058 kb on + strand, within HER17_RS21080 at 4716.058 kb on + strand, within HER17_RS21080 at 4716.059 kb on - strand, within HER17_RS21080 at 4716.143 kb on + strand, within HER17_RS21080 at 4716.144 kb on - strand, within HER17_RS21080 at 4716.208 kb on + strand, within HER17_RS21080 at 4716.209 kb on - strand, within HER17_RS21080 at 4716.211 kb on + strand, within HER17_RS21080 at 4716.241 kb on - strand, within HER17_RS21080 at 4716.271 kb on - strand, within HER17_RS21080 at 4716.366 kb on - strand, within HER17_RS21080 at 4716.391 kb on + strand, within HER17_RS21080 at 4716.434 kb on + strand, within HER17_RS21080 at 4716.434 kb on + strand, within HER17_RS21080 at 4716.434 kb on + strand, within HER17_RS21080 at 4716.465 kb on - strand, within HER17_RS21080
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 4,713,250 - HER17_RS21070 0.33 -0.8 4,713,250 - HER17_RS21070 0.33 +0.7 4,713,250 - HER17_RS21070 0.33 -0.1 4,713,357 + HER17_RS21070 0.43 +0.4 4,713,423 - HER17_RS21070 0.49 +0.3 4,713,434 + HER17_RS21070 0.50 +0.3 4,713,475 + HER17_RS21070 0.53 +0.4 4,713,486 - HER17_RS21070 0.54 +0.9 4,713,505 + HER17_RS21070 0.56 -0.1 4,713,528 + HER17_RS21070 0.58 -0.2 4,713,528 + HER17_RS21070 0.58 -0.5 4,713,528 + HER17_RS21070 0.58 +0.2 4,713,528 + HER17_RS21070 0.58 +0.3 4,713,529 - HER17_RS21070 0.58 -0.5 4,713,529 - HER17_RS21070 0.58 +1.0 4,713,776 + HER17_RS21070 0.80 -0.1 4,713,820 + HER17_RS21070 0.84 +0.7 4,713,821 - HER17_RS21070 0.84 -0.3 4,713,835 + HER17_RS21070 0.85 -1.1 4,713,903 + -0.7 4,713,921 + +0.2 4,713,921 + +0.3 4,713,921 + -0.3 4,713,921 + +2.1 4,713,921 + -1.3 4,713,921 + -0.9 4,713,922 - -0.4 4,713,922 - +0.4 4,713,922 - +0.7 4,713,966 + -0.6 4,713,966 + -0.7 4,713,967 - +0.4 4,713,967 - +0.5 4,713,967 - -0.0 4,713,967 - -0.5 4,714,219 - HER17_RS21075 0.12 +1.1 4,714,238 + HER17_RS21075 0.13 -0.6 4,714,238 + HER17_RS21075 0.13 +0.3 4,714,238 + HER17_RS21075 0.13 +0.9 4,714,240 + HER17_RS21075 0.13 -0.9 4,714,240 + HER17_RS21075 0.13 +0.6 4,714,240 + HER17_RS21075 0.13 +0.3 4,714,250 - HER17_RS21075 0.14 +1.1 4,714,250 - HER17_RS21075 0.14 +0.1 4,714,262 + HER17_RS21075 0.15 +0.1 4,714,322 + HER17_RS21075 0.19 +1.1 4,714,535 + HER17_RS21075 0.33 -1.4 4,714,535 + HER17_RS21075 0.33 -0.6 4,714,535 + HER17_RS21075 0.33 +0.3 4,714,536 - HER17_RS21075 0.33 -1.0 4,714,536 - HER17_RS21075 0.33 +1.0 4,714,604 + HER17_RS21075 0.37 +1.0 4,714,604 + HER17_RS21075 0.37 +0.3 4,714,604 + HER17_RS21075 0.37 -0.9 4,714,605 - HER17_RS21075 0.37 +0.2 4,714,605 - HER17_RS21075 0.37 -1.4 4,714,613 + HER17_RS21075 0.38 +0.5 4,714,613 + HER17_RS21075 0.38 +0.7 4,714,614 - HER17_RS21075 0.38 -0.6 4,714,674 - HER17_RS21075 0.42 -0.5 4,714,755 - HER17_RS21075 0.47 +0.1 4,714,797 + HER17_RS21075 0.50 +0.6 4,714,801 - HER17_RS21075 0.50 +0.1 4,714,982 + HER17_RS21075 0.62 -0.4 4,714,983 - HER17_RS21075 0.62 -0.8 4,714,984 + HER17_RS21075 0.62 -0.1 4,714,984 + HER17_RS21075 0.62 +0.3 4,714,985 - HER17_RS21075 0.62 -0.8 4,714,985 - HER17_RS21075 0.62 -0.1 4,714,985 - HER17_RS21075 0.62 +0.5 4,714,985 - HER17_RS21075 0.62 -0.1 4,714,985 - HER17_RS21075 0.62 -0.2 4,714,985 - HER17_RS21075 0.62 -0.8 4,714,985 - HER17_RS21075 0.62 -1.0 4,714,985 - HER17_RS21075 0.62 +0.3 4,714,985 - HER17_RS21075 0.62 -0.4 4,715,139 + HER17_RS21075 0.72 +0.6 4,715,140 - HER17_RS21075 0.72 +0.3 4,715,211 + HER17_RS21075 0.76 +1.0 4,715,211 + HER17_RS21075 0.76 -1.3 4,715,211 + HER17_RS21075 0.76 +0.2 4,715,211 + HER17_RS21075 0.76 +0.3 4,715,211 + HER17_RS21075 0.76 +0.1 4,715,211 + HER17_RS21075 0.76 -0.5 4,715,211 + HER17_RS21075 0.76 +0.1 4,715,215 + HER17_RS21075 0.77 +1.3 4,715,215 + HER17_RS21075 0.77 +0.7 4,715,215 + HER17_RS21075 0.77 +0.1 4,715,216 - HER17_RS21075 0.77 +0.5 4,715,216 - HER17_RS21075 0.77 +0.4 4,715,216 - HER17_RS21075 0.77 -0.4 4,715,216 - HER17_RS21075 0.77 +0.8 4,715,216 - HER17_RS21075 0.77 +0.5 4,715,219 + HER17_RS21075 0.77 -0.0 4,715,219 + HER17_RS21075 0.77 +0.3 4,715,219 + HER17_RS21075 0.77 +0.0 4,715,219 + HER17_RS21075 0.77 +2.1 4,715,219 + HER17_RS21075 0.77 -0.2 4,715,219 + HER17_RS21075 0.77 +0.3 4,715,219 + HER17_RS21075 0.77 +0.1 4,715,220 - HER17_RS21075 0.77 +0.0 4,715,220 - HER17_RS21075 0.77 +0.5 4,715,220 - HER17_RS21075 0.77 -0.3 4,715,220 - HER17_RS21075 0.77 +0.8 4,715,220 - HER17_RS21075 0.77 +0.2 4,715,220 - HER17_RS21075 0.77 +0.0 4,715,220 - HER17_RS21075 0.77 -0.1 4,715,220 - HER17_RS21075 0.77 -0.2 4,715,220 - HER17_RS21075 0.77 -0.0 4,715,220 - HER17_RS21075 0.77 -0.1 4,715,228 - HER17_RS21075 0.78 +0.6 4,715,351 + HER17_RS21075 0.86 +0.3 4,715,351 + HER17_RS21075 0.86 -0.1 4,715,351 + HER17_RS21075 0.86 +0.7 4,715,352 - HER17_RS21075 0.86 +0.9 4,715,352 - HER17_RS21075 0.86 +1.0 4,715,365 - HER17_RS21075 0.86 -0.0 4,715,398 + HER17_RS21075 0.89 +0.7 4,715,398 + HER17_RS21075 0.89 +0.1 4,715,398 + HER17_RS21075 0.89 -0.1 4,715,398 + HER17_RS21075 0.89 +0.2 4,715,399 - HER17_RS21075 0.89 -0.7 4,715,399 - HER17_RS21075 0.89 +0.8 4,715,399 - HER17_RS21075 0.89 +0.4 4,715,511 - +0.2 4,715,514 + -0.0 4,715,514 + -0.1 4,715,514 + +0.4 4,715,514 + +0.1 4,715,514 + +0.6 4,715,658 + -0.5 4,715,659 - +0.5 4,715,659 - +0.5 4,715,672 + -0.7 4,715,672 + -0.1 4,715,673 - +0.3 4,715,691 + -1.7 4,715,692 - +0.3 4,715,694 + +0.6 4,715,694 + -0.0 4,715,694 + +0.1 4,715,695 - -0.2 4,715,695 - +0.2 4,715,695 - -0.3 4,715,753 - -0.2 4,715,775 - +0.7 4,715,787 - +0.5 4,715,787 - +0.9 4,715,788 + -0.3 4,715,788 + +0.4 4,715,894 - HER17_RS21080 0.20 -2.0 4,715,895 + HER17_RS21080 0.21 +0.7 4,715,896 - HER17_RS21080 0.21 -0.0 4,716,055 + HER17_RS21080 0.37 +0.6 4,716,056 - HER17_RS21080 0.37 +1.1 4,716,056 - HER17_RS21080 0.37 +0.1 4,716,056 - HER17_RS21080 0.37 -0.2 4,716,056 - HER17_RS21080 0.37 -0.1 4,716,058 + HER17_RS21080 0.37 +1.5 4,716,058 + HER17_RS21080 0.37 +0.1 4,716,059 - HER17_RS21080 0.37 +0.3 4,716,143 + HER17_RS21080 0.45 -0.3 4,716,144 - HER17_RS21080 0.46 +0.1 4,716,208 + HER17_RS21080 0.52 -0.1 4,716,209 - HER17_RS21080 0.52 -1.0 4,716,211 + HER17_RS21080 0.52 +0.5 4,716,241 - HER17_RS21080 0.55 +0.6 4,716,271 - HER17_RS21080 0.58 -0.3 4,716,366 - HER17_RS21080 0.68 +0.6 4,716,391 + HER17_RS21080 0.70 +0.4 4,716,434 + HER17_RS21080 0.75 -0.7 4,716,434 + HER17_RS21080 0.75 +0.6 4,716,434 + HER17_RS21080 0.75 +0.6 4,716,465 - HER17_RS21080 0.78 -0.0
Or see this region's nucleotide sequence