Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20690

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,640,114	-		HER17_RS20685	0.63	-0.6
4,640,153	-		HER17_RS20685	0.64	+1.0
4,640,233	-		HER17_RS20685	0.68	+0.3
4,640,233	-		HER17_RS20685	0.68	-1.0
4,640,275	-		HER17_RS20685	0.70	+0.2
4,640,275	-		HER17_RS20685	0.70	+0.3
4,640,396	+		HER17_RS20685	0.75	+0.7
4,640,397	-		HER17_RS20685	0.75	-1.2
4,640,460	+		HER17_RS20685	0.78	-0.6
4,640,460	+		HER17_RS20685	0.78	-0.1
4,640,461	-		HER17_RS20685	0.78	-0.7
4,640,461	-		HER17_RS20685	0.78	-0.6
4,640,461	-		HER17_RS20685	0.78	-1.6
4,640,474	+		HER17_RS20685	0.79	-0.2
4,640,495	-		HER17_RS20685	0.79	-0.1
4,640,584	+		HER17_RS20685	0.83	-0.9
4,640,584	+		HER17_RS20685	0.83	+0.7
4,640,584	+		HER17_RS20685	0.83	+0.0
4,640,584	+		HER17_RS20685	0.83	-1.1
4,640,584	+		HER17_RS20685	0.83	-0.5
4,640,584	+		HER17_RS20685	0.83	-0.9
4,640,584	+		HER17_RS20685	0.83	-0.5
4,640,584	+		HER17_RS20685	0.83	+1.4
4,640,585	-		HER17_RS20685	0.83	+0.8
4,640,585	-		HER17_RS20685	0.83	+0.0
4,640,585	-		HER17_RS20685	0.83	-0.7
4,640,585	-		HER17_RS20685	0.83	+0.1
4,640,585	-		HER17_RS20685	0.83	+0.1
4,640,585	-		HER17_RS20685	0.83	-3.3
4,640,585	-		HER17_RS20685	0.83	+0.4
4,640,586	+		HER17_RS20685	0.83	-1.3
4,640,586	+		HER17_RS20685	0.83	-1.0
4,640,586	+		HER17_RS20685	0.83	-0.6
4,640,587	-		HER17_RS20685	0.84	-0.1
4,640,587	-		HER17_RS20685	0.84	+0.7
4,640,587	-		HER17_RS20685	0.84	+0.2
4,640,587	-		HER17_RS20685	0.84	+0.3
4,640,587	-		HER17_RS20685	0.84	+0.1
4,640,587	-		HER17_RS20685	0.84	+1.3
4,640,592	+		HER17_RS20685	0.84	+0.7
4,640,592	+		HER17_RS20685	0.84	-1.1
4,640,592	+		HER17_RS20685	0.84	-0.5
4,640,593	-		HER17_RS20685	0.84	-2.0
4,640,593	-		HER17_RS20685	0.84	+1.4
4,640,593	-		HER17_RS20685	0.84	-0.7
4,640,593	-		HER17_RS20685	0.84	+0.5
4,640,593	-		HER17_RS20685	0.84	+0.4
4,640,593	-		HER17_RS20685	0.84	+0.4
4,640,761	-				-0.9
4,640,761	-				+0.9
4,640,941	+				-0.9
4,640,941	+				-0.6
4,640,941	+				+0.4
4,640,941	+				+0.1
4,640,941	+				+0.3
4,640,941	+				+0.3
4,640,941	+				-0.7
4,640,942	-				-0.7
4,640,942	-				+0.2
4,640,942	-				-0.5
4,640,942	-				-0.1
4,640,942	-				+0.7
4,640,942	-				+0.4
4,640,942	-				+0.3
4,640,942	-				-0.5
4,640,942	-				+0.2
4,640,942	-				-0.5
4,641,013	-				-0.9
4,641,017	+				+0.4
4,641,017	+				-0.0
4,641,018	-				-1.9
4,641,018	-				-0.5
4,641,018	-				-1.5
4,641,018	-				-1.7
4,641,021	-				-1.3
4,641,021	-				+0.1
4,641,038	-				-1.6
4,641,076	-				-2.5
4,641,076	-				-3.7
4,641,206	+		HER17_RS20690	0.15	-0.1
4,641,216	+		HER17_RS20690	0.16	-5.7
4,641,216	+		HER17_RS20690	0.16	-2.6
4,641,237	+		HER17_RS20690	0.18	-4.2
4,641,357	+		HER17_RS20690	0.31	-4.2
4,641,357	+		HER17_RS20690	0.31	-2.5
4,641,357	+		HER17_RS20690	0.31	-1.1
4,641,357	+		HER17_RS20690	0.31	-1.9
4,641,358	-		HER17_RS20690	0.31	-1.4
4,641,358	-		HER17_RS20690	0.31	-3.5
4,641,358	-		HER17_RS20690	0.31	-2.7
4,641,358	-		HER17_RS20690	0.31	-4.6
4,641,363	+		HER17_RS20690	0.32	-3.6
4,641,363	+		HER17_RS20690	0.32	-0.6
4,641,363	+		HER17_RS20690	0.32	-2.4
4,641,364	-		HER17_RS20690	0.32	-2.8
4,641,429	+		HER17_RS20690	0.39	-3.3
4,641,527	-		HER17_RS20690	0.49	-0.6
4,641,681	-		HER17_RS20690	0.66	-2.6
4,641,702	+		HER17_RS20690	0.68	-5.2
4,641,702	+		HER17_RS20690	0.68	-5.0
4,641,723	+		HER17_RS20690	0.70	-0.6
4,641,723	+		HER17_RS20690	0.70	-3.1
4,641,724	-		HER17_RS20690	0.71	-5.9
4,641,724	-		HER17_RS20690	0.71	-2.3
4,641,857	-		HER17_RS20690	0.85	-2.0
4,641,941	+				-1.6
4,641,942	-				+0.2
4,641,942	-				-1.0
4,642,000	+		HER17_RS20695	0.11	-0.3
4,642,000	+		HER17_RS20695	0.11	+0.2
4,642,001	-		HER17_RS20695	0.11	-1.1
4,642,004	+		HER17_RS20695	0.11	+0.6
4,642,004	+		HER17_RS20695	0.11	+0.1
4,642,004	+		HER17_RS20695	0.11	+0.4
4,642,042	+		HER17_RS20695	0.15	-0.4
4,642,067	+		HER17_RS20695	0.18	-0.6
4,642,091	-		HER17_RS20695	0.21	+0.2
4,642,102	+		HER17_RS20695	0.22	-0.0
4,642,103	-		HER17_RS20695	0.22	-0.4
4,642,135	-		HER17_RS20695	0.26	-0.1
4,642,145	-		HER17_RS20695	0.27	-0.5
4,642,275	+		HER17_RS20695	0.41	-0.1
4,642,276	-		HER17_RS20695	0.41	-0.6
4,642,330	+		HER17_RS20695	0.47	+0.0
4,642,331	-		HER17_RS20695	0.47	-1.0
4,642,331	-		HER17_RS20695	0.47	-1.0
4,642,332	+		HER17_RS20695	0.47	+0.6
4,642,417	-		HER17_RS20695	0.57	-1.1
4,642,417	-		HER17_RS20695	0.57	-0.1
4,642,464	+		HER17_RS20695	0.62	+1.4
4,642,465	-		HER17_RS20695	0.62	+0.5
4,642,465	-		HER17_RS20695	0.62	-0.3
4,642,465	-		HER17_RS20695	0.62	-0.4
4,642,465	-		HER17_RS20695	0.62	-0.6
4,642,494	-		HER17_RS20695	0.65	-0.6
4,642,494	-		HER17_RS20695	0.65	+0.1
4,642,501	-		HER17_RS20695	0.66	+0.4
4,642,515	+		HER17_RS20695	0.68	+0.4
4,642,516	-		HER17_RS20695	0.68	+1.1
4,642,516	-		HER17_RS20695	0.68	-0.6
4,642,534	+		HER17_RS20695	0.70	+0.8
4,642,535	-		HER17_RS20695	0.70	-0.7
4,642,569	+		HER17_RS20695	0.74	-0.4
4,642,590	+		HER17_RS20695	0.76	-0.1
4,642,590	+		HER17_RS20695	0.76	+0.6
4,642,590	+		HER17_RS20695	0.76	-0.1
4,642,624	+		HER17_RS20695	0.80	+0.1
4,642,624	+		HER17_RS20695	0.80	-0.8
4,642,626	+		HER17_RS20695	0.80	-0.3
4,642,626	+		HER17_RS20695	0.80	-0.2
4,642,648	+		HER17_RS20695	0.83	+0.4
4,642,648	+		HER17_RS20695	0.83	-1.1
4,642,649	-		HER17_RS20695	0.83	-0.8
4,642,664	+		HER17_RS20695	0.84	-0.6
4,642,665	-		HER17_RS20695	0.84	-0.5
4,642,743	+				+2.4
4,642,743	+				+0.5
4,642,781	-				+0.4
4,642,792	+				+0.7
4,642,792	+				-1.3
4,642,792	+				+0.1
4,642,792	+				+0.4
4,642,792	+				+1.4
4,642,792	+				-0.7
4,642,792	+				+1.3
4,642,792	+				+0.0
4,642,792	+				-0.6
4,642,793	-				+0.9
4,642,793	-				-0.3
4,642,793	-				+1.2
4,642,793	-				-0.5
4,642,796	+				+0.2
4,642,796	+				-0.0
4,642,796	+				-0.9
4,642,797	-				+0.9
4,642,797	-				+1.6
4,642,797	-				+0.1
4,642,819	-				-1.6
4,642,877	+				+0.9
4,642,883	-				-0.4
4,642,922	+				+0.3
4,642,922	+				+1.9
4,642,922	+				+0.9
4,642,923	-				+0.9
4,642,923	-				-1.0
4,642,923	-				+0.4
4,642,923	-				+0.7
4,642,928	+				-0.1
4,642,952	+				-0.4
4,642,953	-				-0.0
4,642,966	+				-0.3
4,642,971	+				+0.1
4,642,999	+				+0.3