Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20290

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,547,872	+		HER17_RS20285	0.15	+0.6
4,547,873	-		HER17_RS20285	0.16	+0.0
4,547,873	-		HER17_RS20285	0.16	+0.4
4,547,873	-		HER17_RS20285	0.16	-0.5
4,547,885	+		HER17_RS20285	0.17	+0.2
4,547,908	-		HER17_RS20285	0.21	-0.2
4,547,908	-		HER17_RS20285	0.21	-0.1
4,547,944	-		HER17_RS20285	0.26	+0.3
4,547,998	-		HER17_RS20285	0.34	+0.7
4,548,021	-		HER17_RS20285	0.38	+0.5
4,548,075	+		HER17_RS20285	0.46	-0.1
4,548,075	+		HER17_RS20285	0.46	-0.4
4,548,076	-		HER17_RS20285	0.46	-0.7
4,548,076	-		HER17_RS20285	0.46	+1.1
4,548,076	-		HER17_RS20285	0.46	+0.7
4,548,077	+		HER17_RS20285	0.46	+0.5
4,548,077	+		HER17_RS20285	0.46	+0.0
4,548,077	+		HER17_RS20285	0.46	+0.5
4,548,077	+		HER17_RS20285	0.46	-0.5
4,548,077	+		HER17_RS20285	0.46	-1.1
4,548,078	-		HER17_RS20285	0.46	+0.4
4,548,078	-		HER17_RS20285	0.46	+0.7
4,548,103	+		HER17_RS20285	0.50	-0.1
4,548,104	-		HER17_RS20285	0.50	+0.2
4,548,104	-		HER17_RS20285	0.50	-0.1
4,548,139	-		HER17_RS20285	0.56	+0.9
4,548,139	-		HER17_RS20285	0.56	+2.3
4,548,150	-		HER17_RS20285	0.57	-0.3
4,548,150	-		HER17_RS20285	0.57	+0.5
4,548,224	+		HER17_RS20285	0.68	+0.8
4,548,224	+		HER17_RS20285	0.68	+0.5
4,548,231	-		HER17_RS20285	0.69	-1.3
4,548,231	-		HER17_RS20285	0.69	-0.1
4,548,248	+		HER17_RS20285	0.72	+0.4
4,548,248	+		HER17_RS20285	0.72	+1.0
4,548,249	-		HER17_RS20285	0.72	-0.1
4,548,256	+		HER17_RS20285	0.73	-0.5
4,548,290	-		HER17_RS20285	0.78	+0.3
4,548,314	+		HER17_RS20285	0.82	-0.1
4,548,318	+		HER17_RS20285	0.82	+0.1
4,548,318	+		HER17_RS20285	0.82	+1.5
4,548,318	+		HER17_RS20285	0.82	-2.7
4,548,318	+		HER17_RS20285	0.82	-0.7
4,548,319	-		HER17_RS20285	0.83	+2.0
4,548,319	-		HER17_RS20285	0.83	-0.6
4,548,319	-		HER17_RS20285	0.83	+0.1
4,548,336	+		HER17_RS20285	0.85	+1.0
4,548,336	+		HER17_RS20285	0.85	-1.5
4,548,336	+		HER17_RS20285	0.85	+0.5
4,548,408	+				+0.3
4,548,409	-				+0.3
4,548,504	+				+0.4
4,548,504	+				+0.1
4,548,510	+				-0.2
4,548,511	-				+0.3
4,548,511	-				+0.6
4,548,529	-				+0.4
4,548,534	+				-0.2
4,548,534	+				+0.3
4,548,534	+				+1.4
4,548,535	-				+2.7
4,548,535	-				-1.0
4,548,618	+				-0.9
4,548,618	+				+2.0
4,548,619	-				+0.5
4,548,626	+				+0.9
4,548,627	-				+0.2
4,548,640	+				-0.6
4,548,641	-				-0.3
4,548,641	-				+0.9
4,548,740	+				+0.8
4,548,740	+				+0.1
4,548,741	-				-0.2
4,548,752	+				-0.3
4,548,752	+				+0.9
4,548,752	+				+0.5
4,548,753	-				-0.0
4,548,753	-				+0.7
4,548,759	+				-1.0
4,548,759	+				+1.5
4,548,759	+				+1.4
4,548,783	+				-0.4
4,548,791	-				+0.5
4,548,799	+				+0.4
4,548,811	-				-0.1
4,548,820	+				+1.3
4,548,821	-				-0.1
4,548,968	+		HER17_RS20290	0.16	-0.4
4,549,030	+		HER17_RS20290	0.22	+0.4
4,549,031	-		HER17_RS20290	0.23	-1.6
4,549,031	-		HER17_RS20290	0.23	-1.2
4,549,040	+		HER17_RS20290	0.23	-0.6
4,549,041	-		HER17_RS20290	0.23	+0.6
4,549,041	-		HER17_RS20290	0.23	-0.6
4,549,041	-		HER17_RS20290	0.23	+0.3
4,549,041	-		HER17_RS20290	0.23	+0.9
4,549,152	+		HER17_RS20290	0.34	+0.1
4,549,152	+		HER17_RS20290	0.34	-0.1
4,549,152	+		HER17_RS20290	0.34	-2.2
4,549,152	+		HER17_RS20290	0.34	+0.1
4,549,153	-		HER17_RS20290	0.34	-0.9
4,549,153	-		HER17_RS20290	0.34	+0.6
4,549,156	+		HER17_RS20290	0.35	+0.6
4,549,169	+		HER17_RS20290	0.36	-2.0
4,549,169	+		HER17_RS20290	0.36	+1.2
4,549,170	-		HER17_RS20290	0.36	-0.3
4,549,170	-		HER17_RS20290	0.36	+0.8
4,549,262	-		HER17_RS20290	0.45	+0.6
4,549,289	+		HER17_RS20290	0.48	+0.1
4,549,304	-		HER17_RS20290	0.49	+0.8
4,549,304	-		HER17_RS20290	0.49	-0.1
4,549,314	-		HER17_RS20290	0.50	+0.1
4,549,378	+		HER17_RS20290	0.56	-0.9
4,549,469	-		HER17_RS20290	0.65	-1.2
4,549,524	+		HER17_RS20290	0.71	+0.6
4,549,524	+		HER17_RS20290	0.71	-0.3
4,549,606	+		HER17_RS20290	0.79	+0.8
4,549,618	+		HER17_RS20290	0.80	+0.3
4,549,618	+		HER17_RS20290	0.80	-0.3
4,549,618	+		HER17_RS20290	0.80	-0.5
4,549,618	+		HER17_RS20290	0.80	+0.6
4,549,618	+		HER17_RS20290	0.80	+0.1
4,549,619	-		HER17_RS20290	0.80	+0.7
4,549,619	-		HER17_RS20290	0.80	+0.0
4,549,732	+				-0.0
4,549,732	+				-0.6
4,549,733	-				+0.1
4,549,733	-				+1.4
4,549,819	-				-1.0
4,549,823	+				+0.3
4,549,823	+				+1.0
4,549,824	-				-0.3
4,549,824	-				+0.9
4,549,824	-				-0.1
4,549,851	+				+0.3
4,549,869	+				-0.3
4,549,896	-				-0.2
4,549,896	-				-0.8
4,549,896	-				-0.0
4,549,896	-				+0.1
4,549,896	-				-0.6
4,549,910	+				+0.1
4,549,911	-				-0.3
4,549,922	+				+1.0
4,549,922	+				+0.9
4,549,922	+				-0.7
4,549,923	-				+0.8
4,549,923	-				+0.4
4,549,933	-				-0.1
4,549,933	-				+0.7
4,549,957	+				+0.2
4,550,067	+		HER17_RS20295	0.15	-0.3
4,550,068	-		HER17_RS20295	0.15	+0.4
4,550,068	-		HER17_RS20295	0.15	+0.1
4,550,068	-		HER17_RS20295	0.15	+0.4
4,550,125	+		HER17_RS20295	0.20	+0.6
4,550,125	+		HER17_RS20295	0.20	+0.2
4,550,126	-		HER17_RS20295	0.20	+1.0
4,550,126	-		HER17_RS20295	0.20	+0.5
4,550,182	-		HER17_RS20295	0.25	+0.3
4,550,267	-		HER17_RS20295	0.32	+0.9
4,550,267	-		HER17_RS20295	0.32	-0.1
4,550,267	-		HER17_RS20295	0.32	+0.4
4,550,276	+		HER17_RS20295	0.33	+1.6
4,550,318	-		HER17_RS20295	0.36	+0.4
4,550,401	+		HER17_RS20295	0.43	-0.2
4,550,493	+		HER17_RS20295	0.51	-0.4
4,550,496	+		HER17_RS20295	0.51	-0.8
4,550,496	+		HER17_RS20295	0.51	+0.3
4,550,496	+		HER17_RS20295	0.51	+0.7
4,550,496	+		HER17_RS20295	0.51	-0.4
4,550,497	-		HER17_RS20295	0.51	-0.4
4,550,497	-		HER17_RS20295	0.51	+0.7
4,550,529	+		HER17_RS20295	0.54	-0.2
4,550,529	+		HER17_RS20295	0.54	+0.4
4,550,530	-		HER17_RS20295	0.54	+0.1
4,550,530	-		HER17_RS20295	0.54	+0.6
4,550,634	+		HER17_RS20295	0.63	-0.3
4,550,634	+		HER17_RS20295	0.63	+0.9
4,550,699	-		HER17_RS20295	0.69	+1.0
4,550,712	+		HER17_RS20295	0.70	+1.0
4,550,725	-		HER17_RS20295	0.71	-0.5
4,550,725	-		HER17_RS20295	0.71	+0.1
4,550,800	-		HER17_RS20295	0.77	+0.0