Strain Fitness in Pectobacterium carotovorum WPP14

Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20185

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+polygalacturonate
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4,529,568	-	HER17_RS20180	0.37	+1.9
4,529,713	+	HER17_RS20180	0.52	+0.2
4,529,713	+	HER17_RS20180	0.52	-1.4
4,529,713	+	HER17_RS20180	0.52	+0.3
4,529,714	-	HER17_RS20180	0.52	+0.2
4,529,714	-	HER17_RS20180	0.52	+0.8
4,529,714	-	HER17_RS20180	0.52	-1.1
4,529,718	+	HER17_RS20180	0.52	-0.0
4,529,718	+	HER17_RS20180	0.52	+0.3
4,529,760	+	HER17_RS20180	0.57	+0.8
4,529,904	+	HER17_RS20180	0.71	-0.2
4,529,905	-	HER17_RS20180	0.72	-0.6
4,529,905	-	HER17_RS20180	0.72	-0.1
4,529,972	+	HER17_RS20180	0.78	+0.1
4,529,972	+	HER17_RS20180	0.78	+1.0
4,529,973	-	HER17_RS20180	0.79	+0.9
4,529,978	-	HER17_RS20180	0.79	-0.2
4,529,982	-	HER17_RS20180	0.79	-0.0
4,529,982	-	HER17_RS20180	0.79	-0.6
4,530,078	+	HER17_RS20180	0.89	-0.4
4,530,078	+	HER17_RS20180	0.89	+0.8
4,530,079	-	HER17_RS20180	0.89	+0.3
4,530,161	+			-0.3
4,530,180	+			-0.0
4,530,198	+			-0.4
4,530,198	+			+1.2
4,530,198	+			+0.3
4,530,199	-			-0.6
4,530,199	-			-0.2
4,530,234	-			-0.1
4,530,241	+			-0.1
4,530,241	+			+0.6
4,530,241	+			-0.6
4,530,242	-			-1.3
4,530,283	+			+0.1
4,530,284	-			+0.3
4,530,334	+			+1.6
4,530,334	+			+0.4
4,530,334	+			+0.0
4,530,335	-			+0.8
4,530,353	+			+0.7
4,530,353	+			-0.4
4,530,353	+			+0.3
4,530,353	+			+0.0
4,530,354	-			+0.1
4,530,354	-			-0.5
4,530,354	-			-0.0
4,530,363	+			+0.5
4,530,363	+			+0.2
4,530,363	+			+0.4
4,530,363	+			+0.4
4,530,364	-			+0.1
4,530,364	-			+1.1
4,530,364	-			+1.3
4,530,364	-			+0.1
4,530,364	-			-1.4
4,530,364	-			+0.2
4,530,364	-			+0.1
4,530,385	+			+0.2
4,530,385	+			-0.3
4,530,385	+			-0.2
4,530,386	-			+1.7
4,530,392	+			+0.3
4,530,410	+			-0.2
4,530,416	+			+0.3
4,530,432	+			+0.5
4,530,433	-			-1.8
4,530,433	-			-0.1
4,530,449	+			+0.6
4,530,489	+			-0.1
4,530,489	+			+0.1
4,530,489	+			-0.2
4,530,489	+			+0.0
4,530,489	+			-0.5
4,530,490	-			-0.9
4,530,490	-			-0.3
4,530,491	+			+0.1
4,530,492	-			-0.9
4,530,492	-			-0.0
4,530,492	-			+0.7
4,530,492	-			+0.7
4,530,495	+			+0.2
4,530,495	+			-0.0
4,530,495	+			-1.1
4,530,495	+			+0.4
4,530,495	+			-0.3
4,530,496	-			+0.3
4,530,496	-			-1.0
4,530,496	-			-1.6
4,530,496	-			-0.1
4,530,496	-			-0.3
4,530,496	-			+1.1
4,530,514	-			-0.8
4,530,514	-			+0.2
4,530,538	+			+0.1
4,530,539	-			+1.4
4,530,539	-			+0.9
4,530,539	-			+0.4
4,530,541	+			+0.1
4,530,617	-			+0.6
4,530,617	-			+0.4
4,530,617	-			+0.3
4,530,633	-			-1.1
4,530,635	+			-0.2
4,530,649	-			-0.2
4,530,756	+	HER17_RS20185	0.19	+0.4
4,530,804	+	HER17_RS20185	0.24	+0.0
4,530,804	+	HER17_RS20185	0.24	+0.3
4,530,804	+	HER17_RS20185	0.24	-0.0
4,530,804	+	HER17_RS20185	0.24	+0.6
4,530,818	-	HER17_RS20185	0.26	+0.2
4,530,818	-	HER17_RS20185	0.26	+0.1
4,530,830	-	HER17_RS20185	0.27	-0.6
4,530,905	+	HER17_RS20185	0.34	+0.2
4,530,905	+	HER17_RS20185	0.34	-0.2
4,530,905	+	HER17_RS20185	0.34	-0.4
4,530,954	-	HER17_RS20185	0.39	-0.1
4,531,054	-	HER17_RS20185	0.49	+0.2
4,531,105	+	HER17_RS20185	0.54	+0.9
4,531,105	+	HER17_RS20185	0.54	-0.4
4,531,168	+	HER17_RS20185	0.60	-0.3
4,531,172	+	HER17_RS20185	0.61	+1.2
4,531,172	+	HER17_RS20185	0.61	+0.3
4,531,172	+	HER17_RS20185	0.61	-0.2
4,531,172	+	HER17_RS20185	0.61	+0.6
4,531,172	+	HER17_RS20185	0.61	+1.6
4,531,172	+	HER17_RS20185	0.61	+0.2
4,531,173	-	HER17_RS20185	0.61	-0.3
4,531,319	+	HER17_RS20185	0.76	-0.5
4,531,319	+	HER17_RS20185	0.76	-0.8
4,531,319	+	HER17_RS20185	0.76	-0.7
4,531,319	+	HER17_RS20185	0.76	-0.6
4,531,319	+	HER17_RS20185	0.76	+0.8
4,531,320	-	HER17_RS20185	0.76	-0.1
4,531,320	-	HER17_RS20185	0.76	-0.6
4,531,320	-	HER17_RS20185	0.76	+1.3
4,531,320	-	HER17_RS20185	0.76	+0.6
4,531,320	-	HER17_RS20185	0.76	-0.8
4,531,320	-	HER17_RS20185	0.76	+0.3
4,531,320	-	HER17_RS20185	0.76	-0.1
4,531,323	+	HER17_RS20185	0.76	-0.7
4,531,390	+	HER17_RS20185	0.83	+0.6
4,531,390	+	HER17_RS20185	0.83	-0.8
4,531,391	-	HER17_RS20185	0.83	+0.0
4,531,391	-	HER17_RS20185	0.83	+0.0
4,531,565	+			+1.0
4,531,565	+			+0.8
4,531,582	+			+0.1
4,531,583	-			-0.6
4,531,586	+			-0.2
4,531,587	-			-0.6
4,531,587	-			-0.3
4,531,587	-			-0.2
4,531,589	+			-0.8
4,531,589	+			+0.2
4,531,674	-			-0.6
4,531,721	+	HER17_RS20190	0.13	+0.3
4,531,767	+	HER17_RS20190	0.21	-0.5
4,531,768	-	HER17_RS20190	0.21	-0.2
4,531,779	+	HER17_RS20190	0.23	+0.6
4,531,910	+	HER17_RS20190	0.45	+1.0
4,531,910	+	HER17_RS20190	0.45	+0.2
4,531,910	+	HER17_RS20190	0.45	-0.3
4,531,911	-	HER17_RS20190	0.45	+0.6
4,531,924	+	HER17_RS20190	0.47	-0.2
4,531,925	-	HER17_RS20190	0.47	+0.3
4,531,925	-	HER17_RS20190	0.47	-0.4
4,531,995	-	HER17_RS20190	0.59	-0.2
4,531,995	-	HER17_RS20190	0.59	-1.3
4,532,009	+	HER17_RS20190	0.61	-0.6
4,532,009	+	HER17_RS20190	0.61	-0.1
4,532,010	-	HER17_RS20190	0.61	+0.6
4,532,054	+	HER17_RS20190	0.69	+1.4
4,532,054	+	HER17_RS20190	0.69	+0.8
4,532,054	+	HER17_RS20190	0.69	+0.3
4,532,054	+	HER17_RS20190	0.69	+0.7
4,532,055	-	HER17_RS20190	0.69	-0.1
4,532,055	-	HER17_RS20190	0.69	+0.4
4,532,104	+	HER17_RS20190	0.77	-0.4
4,532,109	-	HER17_RS20190	0.78	+1.4
4,532,109	-	HER17_RS20190	0.78	+1.5
4,532,169	+	HER17_RS20190	0.88	+0.9
4,532,212	+			-1.4
4,532,212	+			-0.2
4,532,214	+			+0.4
4,532,214	+			-0.5
4,532,215	-			-0.1
4,532,215	-			-2.2
4,532,317	+			-2.1
4,532,329	+			+0.5
4,532,329	+			+0.6
4,532,330	-			-0.3
4,532,338	+			+0.2
4,532,338	+			-0.3
4,532,342	+			-0.3
4,532,361	+			+0.4
4,532,361	+			+0.3
4,532,362	-			+0.6
4,532,362	-			-0.1
4,532,368	-			-1.0
4,532,369	+			+0.4
4,532,370	-			-0.1
4,532,429	+			-0.6
4,532,486	+			-1.8

Or see this region's nucleotide sequence