Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17605

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,959,461	-		HER17_RS17600	0.61	-0.4
3,959,463	+		HER17_RS17600	0.61	-0.5
3,959,463	+		HER17_RS17600	0.61	+0.4
3,959,463	+		HER17_RS17600	0.61	+0.8
3,959,464	-		HER17_RS17600	0.61	+0.7
3,959,464	-		HER17_RS17600	0.61	+0.3
3,959,464	-		HER17_RS17600	0.61	-0.2
3,959,464	-		HER17_RS17600	0.61	+0.3
3,959,479	-		HER17_RS17600	0.62	-0.1
3,959,553	+		HER17_RS17600	0.67	-0.1
3,959,554	-		HER17_RS17600	0.67	+0.1
3,959,554	-		HER17_RS17600	0.67	-0.4
3,959,554	-		HER17_RS17600	0.67	-0.5
3,959,575	+		HER17_RS17600	0.68	+0.1
3,959,579	+		HER17_RS17600	0.69	+0.1
3,959,579	+		HER17_RS17600	0.69	-0.5
3,959,580	-		HER17_RS17600	0.69	+0.0
3,959,580	-		HER17_RS17600	0.69	-0.1
3,959,580	-		HER17_RS17600	0.69	+1.6
3,959,580	-		HER17_RS17600	0.69	-0.1
3,959,582	+		HER17_RS17600	0.69	+0.0
3,959,583	-		HER17_RS17600	0.69	+0.4
3,959,600	+		HER17_RS17600	0.70	+1.7
3,959,600	+		HER17_RS17600	0.70	+0.0
3,959,600	+		HER17_RS17600	0.70	+1.4
3,959,600	+		HER17_RS17600	0.70	-0.1
3,959,602	+		HER17_RS17600	0.70	-0.4
3,959,602	+		HER17_RS17600	0.70	-0.2
3,959,603	-		HER17_RS17600	0.70	+0.9
3,959,658	-		HER17_RS17600	0.74	-1.2
3,959,658	-		HER17_RS17600	0.74	+0.2
3,959,658	-		HER17_RS17600	0.74	-0.5
3,959,837	+		HER17_RS17600	0.85	+1.1
3,959,837	+		HER17_RS17600	0.85	+0.3
3,959,837	+		HER17_RS17600	0.85	-0.7
3,959,841	-		HER17_RS17600	0.86	+0.9
3,959,841	-		HER17_RS17600	0.86	-0.6
3,959,866	+		HER17_RS17600	0.87	+0.8
3,959,867	-		HER17_RS17600	0.87	-0.2
3,959,902	+		HER17_RS17600	0.90	+0.2
3,959,903	-		HER17_RS17600	0.90	-0.0
3,959,903	-		HER17_RS17600	0.90	+0.3
3,959,931	+				+0.3
3,959,931	+				+0.2
3,959,931	+				-0.6
3,959,931	+				-0.8
3,960,028	+				+0.1
3,960,028	+				-0.7
3,960,128	+				-0.9
3,960,128	+				-0.5
3,960,128	+				+1.0
3,960,128	+				-0.2
3,960,128	+				+0.6
3,960,129	-				-0.4
3,960,129	-				+0.1
3,960,129	-				+0.2
3,960,135	+				+0.9
3,960,136	-				-0.6
3,960,142	+				+0.3
3,960,149	-				-0.5
3,960,165	+				-1.6
3,960,165	+				+0.3
3,960,166	-				-0.0
3,960,234	+				+0.3
3,960,235	-				+0.8
3,960,296	-				+0.7
3,960,302	+				+0.9
3,960,309	+				-0.0
3,960,358	+				-0.1
3,960,375	+				+0.2
3,960,376	-				+0.3
3,960,452	+				-1.4
3,960,494	+				+0.1
3,960,494	+				+0.5
3,960,494	+				-0.7
3,960,495	-				-0.1
3,960,495	-				-0.0
3,960,495	-				-0.7
3,960,495	-				+0.9
3,960,495	-				+0.5
3,960,497	+				+1.3
3,960,497	+				+0.5
3,960,497	+				-0.9
3,960,498	-				-0.4
3,960,498	-				+0.4
3,960,498	-				+0.1
3,960,618	-		HER17_RS17605	0.17	-0.5
3,960,644	+		HER17_RS17605	0.19	-0.3
3,960,644	+		HER17_RS17605	0.19	+0.1
3,960,644	+		HER17_RS17605	0.19	+0.7
3,960,645	-		HER17_RS17605	0.19	-0.6
3,960,645	-		HER17_RS17605	0.19	-0.2
3,960,645	-		HER17_RS17605	0.19	+0.5
3,960,645	-		HER17_RS17605	0.19	-0.4
3,960,645	-		HER17_RS17605	0.19	-0.7
3,960,721	-		HER17_RS17605	0.27	+0.1
3,960,721	-		HER17_RS17605	0.27	+1.5
3,960,753	+		HER17_RS17605	0.30	-1.2
3,960,753	+		HER17_RS17605	0.30	+0.8
3,960,753	+		HER17_RS17605	0.30	-0.0
3,960,754	-		HER17_RS17605	0.30	+0.1
3,960,754	-		HER17_RS17605	0.30	+0.3
3,960,754	-		HER17_RS17605	0.30	+1.0
3,960,754	-		HER17_RS17605	0.30	-0.3
3,960,754	-		HER17_RS17605	0.30	+0.5
3,960,957	+		HER17_RS17605	0.50	+0.5
3,960,957	+		HER17_RS17605	0.50	-1.2
3,960,957	+		HER17_RS17605	0.50	+1.2
3,960,958	-		HER17_RS17605	0.50	+0.9
3,960,958	-		HER17_RS17605	0.50	+0.1
3,960,959	+		HER17_RS17605	0.50	-0.2
3,960,959	+		HER17_RS17605	0.50	-0.1
3,960,960	-		HER17_RS17605	0.50	+0.5
3,960,960	-		HER17_RS17605	0.50	-0.5
3,960,960	-		HER17_RS17605	0.50	-0.7
3,960,960	-		HER17_RS17605	0.50	+0.5
3,960,960	-		HER17_RS17605	0.50	-0.6
3,960,960	-		HER17_RS17605	0.50	+0.2
3,960,983	-		HER17_RS17605	0.53	+0.9
3,961,050	+		HER17_RS17605	0.59	+0.3
3,961,050	+		HER17_RS17605	0.59	+1.3
3,961,095	+		HER17_RS17605	0.64	+1.3
3,961,096	-		HER17_RS17605	0.64	-0.2
3,961,121	+		HER17_RS17605	0.66	-0.3
3,961,122	-		HER17_RS17605	0.66	-0.6
3,961,149	+		HER17_RS17605	0.69	-0.7
3,961,232	-		HER17_RS17605	0.77	-0.7
3,961,344	-		HER17_RS17605	0.88	+0.2
3,961,344	-		HER17_RS17605	0.88	-0.5
3,961,344	-		HER17_RS17605	0.88	+0.4
3,961,373	-				+0.7
3,961,382	-				-0.5
3,961,393	+				+0.7
3,961,393	+				-0.2
3,961,394	-				+0.3
3,961,394	-				-0.5
3,961,395	+				+0.5
3,961,395	+				+0.4
3,961,395	+				+1.4
3,961,396	-				-0.0
3,961,410	+				+0.8
3,961,410	+				-0.2
3,961,450	+				+0.1
3,961,451	-				+0.7
3,961,451	-				-1.0
3,961,510	+				-0.0
3,961,511	-				-1.4
3,961,511	-				+0.3
3,961,511	-				-0.2
3,961,515	+				+0.8
3,961,543	+				+0.5
3,961,543	+				+0.2
3,961,543	+				+1.1
3,961,543	+				+0.1
3,961,543	+				+0.7
3,961,543	+				+0.5
3,961,543	+				+0.3
3,961,544	-				+0.1
3,961,544	-				+0.3
3,961,544	-				+1.5
3,961,544	-				-0.4
3,961,544	-				+0.4
3,961,544	-				-1.1
3,961,545	+				-0.1
3,961,545	+				+0.2
3,961,545	+				-0.2
3,961,545	+				+0.1
3,961,545	+				-0.5
3,961,545	+				+0.6
3,961,545	+				+0.2
3,961,545	+				-0.7
3,961,545	+				-0.1
3,961,546	-				-0.5
3,961,546	-				-0.1
3,961,546	-				-0.6
3,961,546	-				-0.1
3,961,546	-				+2.7
3,961,546	-				+0.2
3,961,546	-				+1.9
3,961,547	+				-0.2
3,961,547	+				+1.2
3,961,547	+				-0.9
3,961,547	+				+0.0
3,961,547	+				+0.4
3,961,547	+				+0.6
3,961,547	+				-0.3
3,961,548	-				+0.2
3,961,548	-				-1.2
3,961,548	-				+0.0
3,961,548	-				+0.2
3,961,548	-				-0.6
3,961,548	-				-0.5
3,961,548	-				-0.7
3,961,548	-				+0.4
3,961,548	-				+0.3
3,961,548	-				+1.1
3,961,548	-				-0.3
3,961,549	+				+1.1
3,961,549	+				+0.7
3,961,549	+				+0.1
3,961,550	-				+0.1
3,961,550	-				-0.2
3,961,550	-				-0.9
3,961,550	-				-0.3
3,961,561	-				-0.0
3,961,561	-				-0.3
3,961,561	-				-0.1
3,961,618	+				-0.0
3,961,728	-		HER17_RS17610	0.10	+0.0
3,961,728	-		HER17_RS17610	0.10	+0.7
3,961,783	-		HER17_RS17610	0.16	+0.4
3,961,811	-		HER17_RS17610	0.19	-0.2
3,961,913	-		HER17_RS17610	0.30	+0.4
3,961,967	+		HER17_RS17610	0.35	-1.2
3,961,967	+		HER17_RS17610	0.35	-0.1
3,961,967	+		HER17_RS17610	0.35	-0.1
3,961,968	-		HER17_RS17610	0.36	+0.7
3,962,014	+		HER17_RS17610	0.40	-0.4
3,962,014	+		HER17_RS17610	0.40	+0.8
3,962,014	+		HER17_RS17610	0.40	+0.2
3,962,014	+		HER17_RS17610	0.40	+0.4
3,962,014	+		HER17_RS17610	0.40	-0.5
3,962,014	+		HER17_RS17610	0.40	+0.1
3,962,014	+		HER17_RS17610	0.40	+0.3
3,962,015	-		HER17_RS17610	0.41	+0.4
3,962,015	-		HER17_RS17610	0.41	-1.2
3,962,015	-		HER17_RS17610	0.41	+1.0
3,962,265	+		HER17_RS17610	0.67	-0.1
3,962,266	-		HER17_RS17610	0.67	+0.4
3,962,266	-		HER17_RS17610	0.67	-0.9
3,962,266	-		HER17_RS17610	0.67	+0.5
3,962,284	+		HER17_RS17610	0.69	+0.7
3,962,375	+		HER17_RS17610	0.78	+0.4
3,962,376	-		HER17_RS17610	0.79	+1.0
3,962,376	-		HER17_RS17610	0.79	-0.3
3,962,387	+		HER17_RS17610	0.80	-0.2
3,962,388	-		HER17_RS17610	0.80	+0.2
3,962,456	+		HER17_RS17610	0.87	+0.5
3,962,457	-		HER17_RS17610	0.87	+0.9