Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16985

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,820,886	+		HER17_RS16980	0.48	+0.0
3,820,992	-		HER17_RS16980	0.56	-0.2
3,821,107	-		HER17_RS16980	0.65	+0.2
3,821,107	-		HER17_RS16980	0.65	-0.4
3,821,107	-		HER17_RS16980	0.65	+0.5
3,821,161	+		HER17_RS16980	0.69	+2.1
3,821,161	+		HER17_RS16980	0.69	-2.4
3,821,162	-		HER17_RS16980	0.69	+0.0
3,821,162	-		HER17_RS16980	0.69	+0.4
3,821,166	+		HER17_RS16980	0.70	-1.6
3,821,166	+		HER17_RS16980	0.70	+0.0
3,821,166	+		HER17_RS16980	0.70	+0.4
3,821,166	+		HER17_RS16980	0.70	+1.7
3,821,167	-		HER17_RS16980	0.70	-0.2
3,821,167	-		HER17_RS16980	0.70	+0.4
3,821,167	-		HER17_RS16980	0.70	+1.0
3,821,167	-		HER17_RS16980	0.70	+0.2
3,821,167	-		HER17_RS16980	0.70	-0.2
3,821,254	+		HER17_RS16980	0.76	-0.2
3,821,257	+		HER17_RS16980	0.77	+0.2
3,821,258	-		HER17_RS16980	0.77	-0.1
3,821,258	-		HER17_RS16980	0.77	+0.9
3,821,301	+		HER17_RS16980	0.80	+1.7
3,821,302	-		HER17_RS16980	0.80	+0.7
3,821,304	+		HER17_RS16980	0.80	+0.9
3,821,305	-		HER17_RS16980	0.80	-0.9
3,821,306	+		HER17_RS16980	0.80	+0.3
3,821,307	-		HER17_RS16980	0.80	-0.1
3,821,463	-				+0.7
3,821,490	+				-0.6
3,821,508	+				+0.1
3,821,508	+				+0.6
3,821,509	-				-0.2
3,821,509	-				+0.0
3,821,526	+				+0.3
3,821,527	-				-0.8
3,821,527	-				-0.1
3,821,527	-				+0.0
3,821,571	+				-1.6
3,821,586	-				-1.0
3,821,651	+				-0.5
3,821,651	+				+0.2
3,821,655	+				-0.7
3,821,655	+				-0.0
3,821,656	-				-0.2
3,821,702	+				+0.2
3,821,702	+				+0.6
3,821,702	+				-1.3
3,821,703	-				-0.3
3,821,703	-				+0.4
3,821,710	+				-1.3
3,821,710	+				+0.3
3,821,711	-				-0.6
3,821,711	-				-0.4
3,821,711	-				+1.3
3,821,748	+				-0.5
3,821,749	-				+0.3
3,821,749	-				-0.3
3,821,769	+				+0.3
3,821,770	-				-0.1
3,821,797	+				+0.0
3,821,797	+				-0.6
3,821,798	-				+0.4
3,821,798	-				-0.4
3,821,798	-				-2.2
3,821,799	+				+0.0
3,821,800	-				+1.0
3,821,800	-				+0.2
3,821,800	-				+0.1
3,821,800	-				+0.0
3,821,856	+				-0.1
3,821,857	-				+0.4
3,821,869	+				-0.6
3,821,869	+				-0.8
3,821,869	+				-0.3
3,821,881	-				-0.9
3,821,910	+				-0.5
3,821,911	-				-0.4
3,821,989	+				+0.4
3,822,020	+				-1.3
3,822,021	-				-0.2
3,822,021	-				-0.2
3,822,052	+				-0.8
3,822,053	-				+0.5
3,822,150	-		HER17_RS16985	0.15	-0.2
3,822,170	+		HER17_RS16985	0.16	+0.1
3,822,170	+		HER17_RS16985	0.16	+0.3
3,822,171	-		HER17_RS16985	0.16	-0.1
3,822,181	+		HER17_RS16985	0.17	+0.9
3,822,272	-		HER17_RS16985	0.22	+0.2
3,822,295	+		HER17_RS16985	0.23	-0.2
3,822,344	-		HER17_RS16985	0.25	-1.1
3,822,347	+		HER17_RS16985	0.26	-1.0
3,822,347	+		HER17_RS16985	0.26	-0.6
3,822,347	+		HER17_RS16985	0.26	-0.2
3,822,347	+		HER17_RS16985	0.26	-0.0
3,822,347	+		HER17_RS16985	0.26	+0.1
3,822,347	+		HER17_RS16985	0.26	+0.0
3,822,347	+		HER17_RS16985	0.26	-0.2
3,822,348	-		HER17_RS16985	0.26	+0.4
3,822,348	-		HER17_RS16985	0.26	+0.4
3,822,348	-		HER17_RS16985	0.26	-1.6
3,822,348	-		HER17_RS16985	0.26	+0.7
3,822,348	-		HER17_RS16985	0.26	-0.1
3,822,348	-		HER17_RS16985	0.26	+0.1
3,822,446	+		HER17_RS16985	0.31	+0.1
3,822,446	+		HER17_RS16985	0.31	-0.0
3,822,447	-		HER17_RS16985	0.31	-0.5
3,822,447	-		HER17_RS16985	0.31	+0.2
3,822,454	+		HER17_RS16985	0.31	-0.2
3,822,454	+		HER17_RS16985	0.31	+0.4
3,822,455	-		HER17_RS16985	0.31	+0.8
3,822,476	-		HER17_RS16985	0.32	+0.4
3,822,499	+		HER17_RS16985	0.34	+0.3
3,822,507	-		HER17_RS16985	0.34	+0.2
3,822,528	-		HER17_RS16985	0.35	-1.1
3,822,544	+		HER17_RS16985	0.36	-0.3
3,822,544	+		HER17_RS16985	0.36	+0.5
3,822,545	-		HER17_RS16985	0.36	+0.2
3,822,545	-		HER17_RS16985	0.36	+0.5
3,822,545	-		HER17_RS16985	0.36	+0.2
3,822,604	+		HER17_RS16985	0.39	-0.4
3,822,620	-		HER17_RS16985	0.40	-0.4
3,822,689	+		HER17_RS16985	0.44	-0.8
3,822,689	+		HER17_RS16985	0.44	-0.6
3,822,689	+		HER17_RS16985	0.44	+0.6
3,822,689	+		HER17_RS16985	0.44	+0.3
3,822,746	+		HER17_RS16985	0.47	+0.5
3,822,746	+		HER17_RS16985	0.47	-0.5
3,822,746	+		HER17_RS16985	0.47	-1.4
3,822,746	+		HER17_RS16985	0.47	-0.7
3,822,746	+		HER17_RS16985	0.47	-1.0
3,822,747	-		HER17_RS16985	0.47	+0.3
3,822,773	-		HER17_RS16985	0.48	+0.6
3,822,876	+		HER17_RS16985	0.54	-0.3
3,822,877	-		HER17_RS16985	0.54	-0.5
3,822,881	+		HER17_RS16985	0.54	+0.0
3,822,882	-		HER17_RS16985	0.54	+0.2
3,822,931	+		HER17_RS16985	0.57	-0.1
3,822,931	+		HER17_RS16985	0.57	-1.0
3,822,975	+		HER17_RS16985	0.59	+0.2
3,822,976	-		HER17_RS16985	0.59	+1.2
3,823,142	+		HER17_RS16985	0.68	+0.1
3,823,142	+		HER17_RS16985	0.68	-0.1
3,823,142	+		HER17_RS16985	0.68	-0.2
3,823,142	+		HER17_RS16985	0.68	-0.1
3,823,143	-		HER17_RS16985	0.68	+0.0
3,823,143	-		HER17_RS16985	0.68	-2.7
3,823,199	+		HER17_RS16985	0.71	+0.0
3,823,199	+		HER17_RS16985	0.71	-0.6
3,823,199	+		HER17_RS16985	0.71	+0.1
3,823,199	+		HER17_RS16985	0.71	-0.5
3,823,199	+		HER17_RS16985	0.71	-0.2
3,823,199	+		HER17_RS16985	0.71	+0.4
3,823,199	+		HER17_RS16985	0.71	+0.8
3,823,200	-		HER17_RS16985	0.71	-0.2
3,823,200	-		HER17_RS16985	0.71	+0.2
3,823,200	-		HER17_RS16985	0.71	+0.4
3,823,200	-		HER17_RS16985	0.71	-0.5
3,823,202	+		HER17_RS16985	0.71	-0.1
3,823,202	+		HER17_RS16985	0.71	+0.3
3,823,203	-		HER17_RS16985	0.71	-1.3
3,823,203	-		HER17_RS16985	0.71	+0.6
3,823,203	-		HER17_RS16985	0.71	+0.2
3,823,327	+		HER17_RS16985	0.78	+0.8
3,823,327	+		HER17_RS16985	0.78	-0.1
3,823,327	+		HER17_RS16985	0.78	+1.4
3,823,328	-		HER17_RS16985	0.78	+0.3
3,823,328	-		HER17_RS16985	0.78	+0.0
3,823,328	-		HER17_RS16985	0.78	+0.1
3,823,328	-		HER17_RS16985	0.78	+0.5
3,823,328	-		HER17_RS16985	0.78	+0.5
3,823,355	+		HER17_RS16985	0.80	-0.1
3,823,356	-		HER17_RS16985	0.80	-0.2
3,823,367	+		HER17_RS16985	0.80	+0.4
3,823,367	+		HER17_RS16985	0.80	-0.2
3,823,479	+		HER17_RS16985	0.86	-1.0
3,823,489	+		HER17_RS16985	0.87	-0.4
3,823,490	-		HER17_RS16985	0.87	+0.0
3,823,631	+				+0.2
3,823,631	+				+0.4
3,823,631	+				+0.0
3,823,640	-				+1.6
3,823,640	-				+0.7
3,823,679	+				-0.2
3,823,679	+				+0.1
3,823,724	-				+0.2
3,823,733	+				-0.5
3,823,736	+				+0.4
3,823,773	+				+0.2
3,823,773	+				+0.2
3,823,790	+				+0.7
3,823,790	+				-0.8
3,823,791	-				-0.6
3,823,791	-				+0.2
3,823,807	+				-0.4
3,823,848	+				+0.4
3,823,848	+				-0.5
3,823,848	+				-0.1
3,823,849	-				+0.2
3,823,849	-				-0.5
3,823,861	+				-0.1
3,823,862	-				+0.8
3,823,891	+				+0.4
3,823,891	+				+0.5
3,823,891	+				-0.7
3,823,895	+				+0.3
3,823,895	+				-2.3
3,823,895	+				-2.3
3,823,896	-				-0.1
3,823,896	-				+0.7
3,823,965	-				+0.3
3,823,965	-				-1.1
3,823,972	-				+0.2
3,823,976	-				-0.4
3,824,048	-				+0.1
3,824,110	-				-0.2
3,824,130	-				-1.0
3,824,139	+				+0.5
3,824,140	-				-0.6
3,824,163	-				+0.0
3,824,179	-				-0.7
3,824,191	-				-0.4
3,824,195	+				-0.2
3,824,195	+				+0.3
3,824,195	+				+0.7
3,824,195	+				-0.5
3,824,195	+				-0.4
3,824,195	+				-0.1
3,824,195	+				-0.3
3,824,195	+				+0.2
3,824,196	-				-0.3
3,824,238	+				-0.8
3,824,355	+				+0.0
3,824,411	+				+0.1
3,824,411	+				+0.4
3,824,414	+				+0.7
3,824,414	+				-0.3
3,824,431	+				+1.1
3,824,554	-		HER17_RS16995	0.18	-0.9
3,824,633	+		HER17_RS16995	0.25	-0.5
3,824,633	+		HER17_RS16995	0.25	+0.0
3,824,633	+		HER17_RS16995	0.25	-0.2
3,824,634	-		HER17_RS16995	0.25	+0.1
3,824,634	-		HER17_RS16995	0.25	+0.1
3,824,634	-		HER17_RS16995	0.25	+0.5
3,824,681	-		HER17_RS16995	0.29	-0.3