Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16365

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,691,738	+				-1.6
3,691,738	+				+0.1
3,691,738	+				+0.0
3,691,738	+				-0.1
3,691,739	-				+0.7
3,691,739	-				+1.9
3,691,739	-				+0.2
3,691,739	-				+1.0
3,691,739	-				+0.8
3,691,742	+				+1.2
3,691,742	+				+0.5
3,691,742	+				-1.4
3,691,742	+				+0.3
3,691,742	+				+0.5
3,691,742	+				+0.3
3,691,743	-				-0.2
3,691,743	-				-0.7
3,691,743	-				-0.6
3,691,743	-				+1.1
3,691,743	-				+0.4
3,691,743	-				+0.6
3,691,743	-				-0.1
3,691,743	-				-0.3
3,691,753	-				-0.3
3,691,768	+				+0.3
3,691,793	+		HER17_RS16355	0.14	+0.4
3,691,795	+		HER17_RS16355	0.14	-0.1
3,691,795	+		HER17_RS16355	0.14	-2.2
3,691,835	+		HER17_RS16355	0.25	-0.1
3,691,835	+		HER17_RS16355	0.25	+0.3
3,691,835	+		HER17_RS16355	0.25	+0.2
3,691,836	-		HER17_RS16355	0.25	+0.7
3,691,836	-		HER17_RS16355	0.25	-1.4
3,691,850	-		HER17_RS16355	0.28	+0.3
3,691,850	-		HER17_RS16355	0.28	+0.3
3,691,974	+		HER17_RS16355	0.60	+0.8
3,691,974	+		HER17_RS16355	0.60	-0.1
3,691,975	-		HER17_RS16355	0.61	+0.6
3,691,987	-		HER17_RS16355	0.64	-0.8
3,692,104	-				+1.1
3,692,398	+		HER17_RS16360	0.43	+0.0
3,692,456	+		HER17_RS16360	0.56	+0.3
3,692,500	-		HER17_RS16360	0.65	+0.4
3,692,519	-		HER17_RS16360	0.70	-0.1
3,692,558	+		HER17_RS16360	0.78	+0.5
3,692,585	+		HER17_RS16360	0.84	-0.8
3,692,630	+				+0.1
3,692,642	+				-0.0
3,692,675	+				+0.3
3,692,695	-				-0.0
3,692,701	-				+1.3
3,692,703	+				+1.3
3,692,711	+				+0.3
3,692,712	-				+0.5
3,692,714	+				+1.0
3,692,726	+				-0.1
3,692,727	-				+0.0
3,692,937	-		HER17_RS16365	0.27	-0.7
3,693,003	+		HER17_RS16365	0.35	+0.4
3,693,003	+		HER17_RS16365	0.35	+1.3
3,693,004	-		HER17_RS16365	0.35	+0.1
3,693,004	-		HER17_RS16365	0.35	-0.6
3,693,004	-		HER17_RS16365	0.35	+0.4
3,693,004	-		HER17_RS16365	0.35	+0.7
3,693,012	+		HER17_RS16365	0.36	+0.5
3,693,169	-		HER17_RS16365	0.56	-0.2
3,693,169	-		HER17_RS16365	0.56	+0.7
3,693,236	+		HER17_RS16365	0.65	-0.1
3,693,236	+		HER17_RS16365	0.65	+0.0
3,693,237	-		HER17_RS16365	0.65	-0.1
3,693,237	-		HER17_RS16365	0.65	-1.4
3,693,237	-		HER17_RS16365	0.65	-0.2
3,693,237	-		HER17_RS16365	0.65	-1.7
3,693,237	-		HER17_RS16365	0.65	-0.6
3,693,244	+		HER17_RS16365	0.66	+0.9
3,693,245	-		HER17_RS16365	0.66	+0.6
3,693,245	-		HER17_RS16365	0.66	-0.9
3,693,257	+		HER17_RS16365	0.67	+1.2
3,693,258	-		HER17_RS16365	0.68	+0.3
3,693,326	-		HER17_RS16365	0.76	+0.2
3,693,326	-		HER17_RS16365	0.76	+0.6
3,693,328	+		HER17_RS16365	0.76	-0.2
3,693,328	+		HER17_RS16365	0.76	-0.2
3,693,328	+		HER17_RS16365	0.76	+0.6
3,693,329	-		HER17_RS16365	0.77	-0.3
3,693,369	+		HER17_RS16365	0.82	-0.3
3,693,369	+		HER17_RS16365	0.82	+0.1
3,693,371	+		HER17_RS16365	0.82	-1.4
3,693,371	+		HER17_RS16365	0.82	+0.6
3,693,372	-		HER17_RS16365	0.82	-0.9
3,693,441	+				-0.3
3,693,442	-				+0.6
3,693,442	-				-0.5
3,693,468	+				-0.0
3,693,498	-				+0.8
3,693,501	+				-0.2
3,693,501	+				-0.7
3,693,502	-				+0.3
3,693,502	-				+0.1
3,693,533	+				-0.3
3,693,533	+				-0.3
3,693,534	-				-1.6
3,693,534	-				+0.3
3,693,548	+		HER17_RS16370	0.12	-0.1
3,693,548	+		HER17_RS16370	0.12	-1.9
3,693,548	+		HER17_RS16370	0.12	+0.0
3,693,548	+		HER17_RS16370	0.12	-0.2
3,693,548	+		HER17_RS16370	0.12	-0.2
3,693,549	-		HER17_RS16370	0.12	+0.8
3,693,549	-		HER17_RS16370	0.12	+0.7
3,693,549	-		HER17_RS16370	0.12	+1.2
3,693,549	-		HER17_RS16370	0.12	+0.7
3,693,569	-		HER17_RS16370	0.18	+0.2
3,693,625	-		HER17_RS16370	0.34	+0.1
3,693,625	-		HER17_RS16370	0.34	+0.1
3,693,625	-		HER17_RS16370	0.34	-0.3
3,693,625	-		HER17_RS16370	0.34	+0.4
3,693,671	+		HER17_RS16370	0.47	+0.3
3,693,682	+		HER17_RS16370	0.50	+0.0
3,693,682	+		HER17_RS16370	0.50	+0.1
3,693,682	+		HER17_RS16370	0.50	-0.4
3,693,682	+		HER17_RS16370	0.50	+0.1
3,693,682	+		HER17_RS16370	0.50	-1.0
3,693,682	+		HER17_RS16370	0.50	-0.5
3,693,682	+		HER17_RS16370	0.50	-0.6
3,693,682	+		HER17_RS16370	0.50	+0.7
3,693,682	+		HER17_RS16370	0.50	-0.5
3,693,683	-		HER17_RS16370	0.50	+0.9
3,693,683	-		HER17_RS16370	0.50	-0.1
3,693,683	-		HER17_RS16370	0.50	-0.1
3,693,683	-		HER17_RS16370	0.50	+0.9
3,693,683	-		HER17_RS16370	0.50	-0.7
3,693,683	-		HER17_RS16370	0.50	-0.1
3,693,683	-		HER17_RS16370	0.50	+0.6
3,693,683	-		HER17_RS16370	0.50	-1.4
3,693,881	+				-1.1
3,693,881	+				+0.9
3,693,882	-				+0.1
3,693,882	-				-0.1
3,693,884	+				+0.2
3,693,885	-				-0.0
3,693,885	-				-0.3
3,693,885	-				+0.2
3,693,900	+				-0.3
3,693,901	-				-1.0
3,693,901	-				-0.5
3,693,901	-				-0.1
3,693,901	-				+0.2
3,694,008	+		HER17_RS16375	0.13	-0.4
3,694,009	-		HER17_RS16375	0.14	+0.5
3,694,069	-		HER17_RS16375	0.27	-0.1
3,694,071	+		HER17_RS16375	0.28	-0.4
3,694,072	-		HER17_RS16375	0.28	+0.4
3,694,206	-		HER17_RS16375	0.58	-0.7
3,694,206	-		HER17_RS16375	0.58	-0.8
3,694,221	-		HER17_RS16375	0.61	-1.4
3,694,244	+		HER17_RS16375	0.66	+0.2
3,694,244	+		HER17_RS16375	0.66	-0.3
3,694,321	-		HER17_RS16375	0.83	-0.7
3,694,349	+		HER17_RS16375	0.90	-0.5
3,694,350	-				-1.6
3,694,383	+				+0.9
3,694,383	+				-0.9
3,694,383	+				-0.3
3,694,394	+				+0.2
3,694,395	-				+0.2
3,694,395	-				+0.0
3,694,401	+				-0.1
3,694,401	+				+0.3
3,694,406	+				-0.1
3,694,406	+				-0.7
3,694,406	+				+0.0
3,694,407	-				+0.3
3,694,443	+				+0.4
3,694,462	+				+0.0
3,694,463	-				+0.3
3,694,467	-				+0.4
3,694,473	+				-1.3
3,694,473	+				-0.4
3,694,473	+				-0.6
3,694,474	-				-0.3
3,694,474	-				+0.3
3,694,500	-				+0.3