Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15645

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,512,700	+		HER17_RS15640	0.48	-0.0
3,512,700	+		HER17_RS15640	0.48	+0.4
3,512,700	+		HER17_RS15640	0.48	-0.2
3,512,701	-		HER17_RS15640	0.48	-0.0
3,512,701	-		HER17_RS15640	0.48	-0.7
3,512,710	-		HER17_RS15640	0.48	+0.1
3,512,711	+		HER17_RS15640	0.48	-0.4
3,512,711	+		HER17_RS15640	0.48	-2.2
3,512,711	+		HER17_RS15640	0.48	+0.0
3,512,711	+		HER17_RS15640	0.48	+0.6
3,512,711	+		HER17_RS15640	0.48	-0.4
3,512,711	+		HER17_RS15640	0.48	+0.5
3,512,711	+		HER17_RS15640	0.48	+0.9
3,512,711	+		HER17_RS15640	0.48	+0.0
3,512,712	-		HER17_RS15640	0.49	+0.1
3,512,712	-		HER17_RS15640	0.49	+1.0
3,512,712	-		HER17_RS15640	0.49	-0.1
3,512,712	-		HER17_RS15640	0.49	+0.7
3,512,712	-		HER17_RS15640	0.49	+0.9
3,512,712	-		HER17_RS15640	0.49	+0.3
3,512,712	-		HER17_RS15640	0.49	+0.7
3,512,721	+		HER17_RS15640	0.49	+1.0
3,512,722	-		HER17_RS15640	0.49	-1.2
3,512,725	-		HER17_RS15640	0.49	+0.8
3,512,725	-		HER17_RS15640	0.49	+0.1
3,512,763	+		HER17_RS15640	0.52	-0.7
3,512,764	-		HER17_RS15640	0.52	+1.4
3,512,796	+		HER17_RS15640	0.55	-0.4
3,512,883	+		HER17_RS15640	0.61	+0.3
3,512,886	+		HER17_RS15640	0.61	+0.6
3,512,898	+		HER17_RS15640	0.62	+0.8
3,512,900	+		HER17_RS15640	0.62	+0.3
3,512,901	-		HER17_RS15640	0.62	-0.7
3,512,901	-		HER17_RS15640	0.62	-0.2
3,512,901	-		HER17_RS15640	0.62	+0.6
3,513,009	+		HER17_RS15640	0.70	+0.5
3,513,010	-		HER17_RS15640	0.70	+0.5
3,513,010	-		HER17_RS15640	0.70	+0.4
3,513,013	-		HER17_RS15640	0.70	-0.2
3,513,036	+		HER17_RS15640	0.72	+0.5
3,513,074	+		HER17_RS15640	0.75	+0.3
3,513,075	-		HER17_RS15640	0.75	-0.3
3,513,155	-		HER17_RS15640	0.81	-0.6
3,513,155	-		HER17_RS15640	0.81	+0.7
3,513,159	+		HER17_RS15640	0.81	+0.8
3,513,160	-		HER17_RS15640	0.81	+0.1
3,513,160	-		HER17_RS15640	0.81	-0.2
3,513,160	-		HER17_RS15640	0.81	+0.4
3,513,188	+		HER17_RS15640	0.83	-0.4
3,513,188	+		HER17_RS15640	0.83	+0.4
3,513,188	+		HER17_RS15640	0.83	+0.3
3,513,188	+		HER17_RS15640	0.83	+0.8
3,513,188	+		HER17_RS15640	0.83	-0.3
3,513,189	-		HER17_RS15640	0.83	+0.6
3,513,189	-		HER17_RS15640	0.83	+0.3
3,513,189	-		HER17_RS15640	0.83	-0.8
3,513,193	-		HER17_RS15640	0.83	-0.7
3,513,280	+		HER17_RS15640	0.90	+2.0
3,513,310	+				-0.7
3,513,398	-				+0.0
3,513,423	+				+1.2
3,513,423	+				+0.0
3,513,423	+				-0.4
3,513,423	+				+0.5
3,513,423	+				-0.4
3,513,423	+				+1.6
3,513,423	+				+0.5
3,513,424	-				-0.2
3,513,424	-				-1.3
3,513,424	-				-0.4
3,513,424	-				-0.7
3,513,424	-				+0.7
3,513,424	-				+0.3
3,513,424	-				-0.0
3,513,427	+				+0.8
3,513,428	-				-0.4
3,513,525	+				-2.2
3,513,579	+				-0.7
3,513,579	+				+1.1
3,513,583	+				+0.1
3,513,584	-				-3.1
3,513,606	-				-0.5
3,513,634	-				+0.0
3,513,681	+				+0.8
3,513,682	-				-0.0
3,513,811	+		HER17_RS15645	0.12	+0.1
3,513,811	+		HER17_RS15645	0.12	-0.3
3,513,811	+		HER17_RS15645	0.12	+0.8
3,513,811	+		HER17_RS15645	0.12	+0.1
3,513,812	-		HER17_RS15645	0.12	+0.9
3,513,812	-		HER17_RS15645	0.12	+0.3
3,513,812	-		HER17_RS15645	0.12	-0.2
3,513,876	-		HER17_RS15645	0.19	-0.9
3,513,878	-		HER17_RS15645	0.19	+1.0
3,513,961	+		HER17_RS15645	0.27	+0.6
3,513,962	-		HER17_RS15645	0.28	-0.0
3,513,984	-		HER17_RS15645	0.30	-0.0
3,514,061	+		HER17_RS15645	0.38	-0.2
3,514,095	+		HER17_RS15645	0.41	-0.5
3,514,096	-		HER17_RS15645	0.41	+0.2
3,514,096	-		HER17_RS15645	0.41	-0.2
3,514,096	-		HER17_RS15645	0.41	+0.4
3,514,096	-		HER17_RS15645	0.41	+0.5
3,514,103	-		HER17_RS15645	0.42	+1.0
3,514,251	+		HER17_RS15645	0.57	-0.6
3,514,251	+		HER17_RS15645	0.57	-0.4
3,514,251	+		HER17_RS15645	0.57	-0.2
3,514,271	+		HER17_RS15645	0.59	+0.2
3,514,302	-		HER17_RS15645	0.62	-0.6
3,514,388	+		HER17_RS15645	0.71	+0.1
3,514,448	+		HER17_RS15645	0.77	+1.1
3,514,449	-		HER17_RS15645	0.77	-1.0
3,514,478	+		HER17_RS15645	0.80	+0.6
3,514,508	+		HER17_RS15645	0.83	-0.8
3,514,511	+		HER17_RS15645	0.83	-0.2
3,514,512	-		HER17_RS15645	0.83	+0.6
3,514,558	+		HER17_RS15645	0.88	-0.6
3,514,587	+				-0.3
3,514,591	-				+0.0
3,514,591	-				+0.6
3,514,636	+				+0.8
3,514,636	+				+0.1
3,514,637	-				-0.4
3,514,637	-				+0.8
3,514,637	-				+0.3
3,514,637	-				+1.0
3,514,646	+				-0.2
3,514,676	+				+0.7
3,514,676	+				-0.0
3,514,676	+				-0.8
3,514,766	+		HER17_RS15650	0.36	+0.1
3,514,767	-		HER17_RS15650	0.36	+0.5
3,514,767	-		HER17_RS15650	0.36	+0.3
3,514,794	+		HER17_RS15650	0.50	+1.8
3,514,795	-		HER17_RS15650	0.50	-0.3
3,514,803	+		HER17_RS15650	0.54	-1.0
3,514,803	+		HER17_RS15650	0.54	-0.7
3,514,804	-		HER17_RS15650	0.54	+1.0
3,514,804	-		HER17_RS15650	0.54	+0.6
3,514,814	+		HER17_RS15650	0.59	-2.0
3,514,814	+		HER17_RS15650	0.59	-0.3
3,514,815	-		HER17_RS15650	0.60	+0.2
3,514,845	+		HER17_RS15650	0.75	+0.0
3,514,865	+		HER17_RS15650	0.84	+0.0
3,514,901	-				+1.3
3,514,901	-				+0.6
3,514,901	-				+0.8
3,514,923	+				-0.6
3,514,941	+				+0.5
3,514,948	+				-0.3
3,514,949	-				+0.0
3,514,949	-				+0.1
3,514,949	-				+2.2
3,514,949	-				-0.4
3,514,957	-				+1.3
3,514,958	+				-1.6
3,514,958	+				+1.0
3,514,958	+				+0.6
3,514,958	+				+0.5
3,514,958	+				+0.4
3,514,958	+				+0.5
3,514,959	-				-0.2
3,514,959	-				+0.1
3,514,959	-				+0.2
3,514,959	-				-0.6
3,514,959	-				+0.7
3,514,963	+				+0.4
3,514,964	-				-0.7
3,514,964	-				+0.8
3,514,964	-				-0.2
3,514,965	+				+0.1
3,514,966	-				-0.4
3,514,966	-				+0.6
3,514,966	-				-0.0
3,514,966	-				-0.3
3,515,007	+				+0.3
3,515,007	+				+0.0
3,515,007	+				-0.2
3,515,043	+				+0.6
3,515,043	+				-0.5
3,515,043	+				-1.3
3,515,088	+				+0.4
3,515,088	+				+0.2
3,515,088	+				+0.5
3,515,088	+				-1.0
3,515,088	+				-0.3
3,515,088	+				+0.2
3,515,088	+				-0.3
3,515,088	+				+0.4
3,515,089	-				-0.5
3,515,089	-				-0.1
3,515,089	-				-0.2
3,515,108	-				+0.6
3,515,108	-				+0.2
3,515,122	+				-0.2
3,515,122	+				+0.2
3,515,123	-				+0.1
3,515,123	-				-0.9
3,515,144	-				+0.8
3,515,147	-				-2.5
3,515,152	-				-0.1
3,515,159	-				-0.4
3,515,166	+				+0.5
3,515,166	+				-1.7
3,515,167	-				+0.4
3,515,206	+				+0.7
3,515,207	-				+2.4
3,515,207	-				+0.4
3,515,207	-				+0.5
3,515,208	+				-0.2
3,515,208	+				-0.6
3,515,208	+				+1.1
3,515,208	+				+0.2
3,515,208	+				+0.6
3,515,208	+				+0.0
3,515,209	-				-0.7
3,515,209	-				-0.9
3,515,215	+				-0.4
3,515,305	-		HER17_RS15655	0.12	+0.4
3,515,305	-		HER17_RS15655	0.12	-1.1
3,515,362	+		HER17_RS15655	0.15	+0.1
3,515,362	+		HER17_RS15655	0.15	+1.4
3,515,363	-		HER17_RS15655	0.15	-0.5
3,515,363	-		HER17_RS15655	0.15	-0.2
3,515,366	-		HER17_RS15655	0.15	+0.3
3,515,409	+		HER17_RS15655	0.17	+1.3
3,515,416	+		HER17_RS15655	0.17	+0.6
3,515,416	+		HER17_RS15655	0.17	-0.3
3,515,417	-		HER17_RS15655	0.17	+0.2
3,515,428	+		HER17_RS15655	0.18	-0.2
3,515,541	+		HER17_RS15655	0.23	-0.3
3,515,542	-		HER17_RS15655	0.23	+1.0
3,515,542	-		HER17_RS15655	0.23	-1.5