Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14490

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,259,795	-		HER17_RS14485	0.57	+0.5
3,259,819	+		HER17_RS14485	0.58	+0.6
3,259,819	+		HER17_RS14485	0.58	+1.2
3,259,826	+		HER17_RS14485	0.59	+0.8
3,259,827	-		HER17_RS14485	0.59	+0.3
3,259,850	-		HER17_RS14485	0.60	+0.6
3,259,869	-		HER17_RS14485	0.61	-0.3
3,259,883	+		HER17_RS14485	0.61	+1.3
3,259,884	-		HER17_RS14485	0.61	-0.9
3,259,884	-		HER17_RS14485	0.61	+0.9
3,259,884	-		HER17_RS14485	0.61	+0.5
3,259,978	-		HER17_RS14485	0.66	+0.8
3,259,978	-		HER17_RS14485	0.66	+1.8
3,259,993	-		HER17_RS14485	0.66	+0.7
3,260,074	+		HER17_RS14485	0.70	-0.1
3,260,158	+		HER17_RS14485	0.74	+1.1
3,260,158	+		HER17_RS14485	0.74	+0.3
3,260,158	+		HER17_RS14485	0.74	+0.6
3,260,227	+		HER17_RS14485	0.77	+0.6
3,260,227	+		HER17_RS14485	0.77	+1.0
3,260,228	-		HER17_RS14485	0.77	-0.2
3,260,307	+		HER17_RS14485	0.81	+0.8
3,260,307	+		HER17_RS14485	0.81	+0.6
3,260,347	+		HER17_RS14485	0.83	-0.1
3,260,347	+		HER17_RS14485	0.83	+1.3
3,260,348	-		HER17_RS14485	0.83	+1.1
3,260,348	-		HER17_RS14485	0.83	+0.7
3,260,355	+		HER17_RS14485	0.83	+0.4
3,260,356	-		HER17_RS14485	0.83	+0.9
3,260,378	-		HER17_RS14485	0.84	-0.6
3,260,389	+		HER17_RS14485	0.85	+0.7
3,260,391	+		HER17_RS14485	0.85	+2.5
3,260,413	+		HER17_RS14485	0.86	+0.1
3,260,416	-		HER17_RS14485	0.86	+0.5
3,260,416	-		HER17_RS14485	0.86	+0.8
3,260,464	-		HER17_RS14485	0.88	+0.6
3,260,490	+		HER17_RS14485	0.90	+0.5
3,260,491	-		HER17_RS14485	0.90	-0.2
3,260,494	+		HER17_RS14485	0.90	-0.2
3,260,494	+		HER17_RS14485	0.90	+0.5
3,260,494	+		HER17_RS14485	0.90	+0.9
3,260,495	-		HER17_RS14485	0.90	-1.5
3,260,615	-				+0.5
3,260,687	+				+1.7
3,260,687	+				+2.0
3,260,688	-				+1.2
3,260,688	-				+0.5
3,260,688	-				+1.2
3,260,688	-				+0.9
3,260,738	+				+0.5
3,260,739	-				-0.1
3,260,757	+				+1.0
3,260,757	+				+1.1
3,260,758	-				+0.7
3,260,758	-				+0.8
3,260,769	+				+0.4
3,260,769	+				+0.9
3,260,769	+				+0.7
3,260,769	+				+0.5
3,260,769	+				+1.0
3,260,770	-				+0.5
3,260,770	-				+1.1
3,260,770	-				+0.5
3,260,770	-				-1.8
3,260,900	+		HER17_RS14490	0.24	+2.0
3,260,901	-		HER17_RS14490	0.24	+0.1
3,260,942	+		HER17_RS14490	0.30	+0.1
3,260,943	-		HER17_RS14490	0.30	-0.3
3,260,943	-		HER17_RS14490	0.30	+0.2
3,261,062	+		HER17_RS14490	0.45	+0.9
3,261,062	+		HER17_RS14490	0.45	+2.0
3,261,062	+		HER17_RS14490	0.45	+0.0
3,261,062	+		HER17_RS14490	0.45	-0.9
3,261,063	-		HER17_RS14490	0.45	-0.1
3,261,063	-		HER17_RS14490	0.45	+0.3
3,261,063	-		HER17_RS14490	0.45	+0.8
3,261,063	-		HER17_RS14490	0.45	+1.2
3,261,063	-		HER17_RS14490	0.45	+1.2
3,261,071	+		HER17_RS14490	0.46	-0.7
3,261,072	-		HER17_RS14490	0.46	-0.3
3,261,072	-		HER17_RS14490	0.46	+0.3
3,261,105	-		HER17_RS14490	0.50	+1.1
3,261,157	-		HER17_RS14490	0.57	+1.7
3,261,195	+		HER17_RS14490	0.62	-0.3
3,261,195	+		HER17_RS14490	0.62	+0.7
3,261,196	-		HER17_RS14490	0.62	+0.0
3,261,327	+		HER17_RS14490	0.79	+0.2
3,261,327	+		HER17_RS14490	0.79	-0.0
3,261,328	-		HER17_RS14490	0.79	-0.0
3,261,328	-		HER17_RS14490	0.79	+0.2
3,261,503	+				+0.4
3,261,508	+				+1.9
3,261,508	+				+1.2
3,261,508	+				+0.4
3,261,508	+				+0.0
3,261,512	+				+0.7
3,261,513	-				+1.2
3,261,520	+				+1.6
3,261,520	+				+1.0
3,261,524	-				+1.6
3,261,559	-				-0.0
3,261,560	+				+0.7
3,261,560	+				+1.2
3,261,560	+				+0.6
3,261,561	-				+0.8
3,261,561	-				-1.3
3,261,561	-				-1.4
3,261,561	-				+0.4
3,261,561	-				+1.2
3,261,561	-				+1.2
3,261,605	+		HER17_RS14495	0.15	+0.0
3,261,606	-		HER17_RS14495	0.15	+0.2
3,261,609	+		HER17_RS14495	0.16	+1.0
3,261,609	+		HER17_RS14495	0.16	+0.9
3,261,609	+		HER17_RS14495	0.16	+0.8
3,261,610	-		HER17_RS14495	0.16	+0.6
3,261,610	-		HER17_RS14495	0.16	+0.9
3,261,617	+		HER17_RS14495	0.17	+0.7
3,261,727	-		HER17_RS14495	0.33	+0.3
3,261,727	-		HER17_RS14495	0.33	+0.6
3,261,727	-		HER17_RS14495	0.33	+1.2
3,261,727	-		HER17_RS14495	0.33	+0.6
3,261,727	-		HER17_RS14495	0.33	+1.8
3,261,729	+		HER17_RS14495	0.33	+3.4
3,261,729	+		HER17_RS14495	0.33	+0.8
3,261,729	+		HER17_RS14495	0.33	+1.1
3,261,729	+		HER17_RS14495	0.33	+0.7
3,261,730	-		HER17_RS14495	0.34	+0.6
3,261,802	+		HER17_RS14495	0.44	+0.7
3,261,803	-		HER17_RS14495	0.44	-0.0
3,261,803	-		HER17_RS14495	0.44	-0.1
3,261,803	-		HER17_RS14495	0.44	-0.2
3,261,808	+		HER17_RS14495	0.45	-0.3
3,261,834	+		HER17_RS14495	0.49	+0.8
3,261,842	+		HER17_RS14495	0.50	+0.2
3,261,842	+		HER17_RS14495	0.50	+1.1
3,261,842	+		HER17_RS14495	0.50	+0.1
3,261,842	+		HER17_RS14495	0.50	-0.7
3,261,843	-		HER17_RS14495	0.50	+0.7
3,261,843	-		HER17_RS14495	0.50	+0.8
3,261,843	-		HER17_RS14495	0.50	+1.3
3,261,843	-		HER17_RS14495	0.50	+0.0
3,261,843	-		HER17_RS14495	0.50	+0.7
3,261,846	+		HER17_RS14495	0.51	+1.2
3,261,847	-		HER17_RS14495	0.51	+0.9
3,261,847	-		HER17_RS14495	0.51	+0.3
3,261,899	-		HER17_RS14495	0.59	+1.6
3,261,899	-		HER17_RS14495	0.59	+0.3
3,261,903	+		HER17_RS14495	0.59	+1.1
3,261,904	-		HER17_RS14495	0.59	+1.0
3,262,123	+				+0.5
3,262,142	-				+1.5
3,262,206	-				-0.2
3,262,206	-				-1.6
3,262,239	+				+0.7
3,262,240	-				+0.7
3,262,256	+				+0.7
3,262,261	-				+0.9
3,262,273	-				+0.8
3,262,449	+		HER17_RS14500	0.66	+0.6
3,262,450	-		HER17_RS14500	0.66	+1.5
3,262,474	-		HER17_RS14500	0.74	+0.1