Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07045

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,560,077	+		HER17_RS07035	0.68	+0.2
1,560,140	+		HER17_RS07035	0.77	+0.5
1,560,210	+		HER17_RS07035	0.87	+1.3
1,560,210	+		HER17_RS07035	0.87	-1.1
1,560,222	-		HER17_RS07035	0.89	+0.3
1,560,392	+		HER17_RS07040	0.14	-0.0
1,560,473	+		HER17_RS07040	0.25	-0.2
1,560,473	+		HER17_RS07040	0.25	-0.2
1,560,473	+		HER17_RS07040	0.25	+0.0
1,560,473	+		HER17_RS07040	0.25	+0.6
1,560,474	-		HER17_RS07040	0.25	+0.6
1,560,477	+		HER17_RS07040	0.26	+1.1
1,560,477	+		HER17_RS07040	0.26	+0.4
1,560,481	+		HER17_RS07040	0.26	+0.5
1,560,481	+		HER17_RS07040	0.26	+0.3
1,560,481	+		HER17_RS07040	0.26	+0.9
1,560,482	-		HER17_RS07040	0.26	+0.2
1,560,506	-		HER17_RS07040	0.30	-0.4
1,560,526	+		HER17_RS07040	0.33	-1.2
1,560,526	+		HER17_RS07040	0.33	+1.5
1,560,526	+		HER17_RS07040	0.33	-0.5
1,560,527	-		HER17_RS07040	0.33	+1.7
1,560,527	-		HER17_RS07040	0.33	-0.4
1,560,527	-		HER17_RS07040	0.33	-0.1
1,560,538	+		HER17_RS07040	0.34	+0.2
1,560,538	+		HER17_RS07040	0.34	+0.6
1,560,539	-		HER17_RS07040	0.34	+0.4
1,560,539	-		HER17_RS07040	0.34	-1.1
1,560,540	+		HER17_RS07040	0.35	-1.6
1,560,541	-		HER17_RS07040	0.35	-1.4
1,560,541	-		HER17_RS07040	0.35	-0.3
1,560,637	+		HER17_RS07040	0.48	-0.2
1,560,638	-		HER17_RS07040	0.48	-0.1
1,560,706	+		HER17_RS07040	0.58	+0.4
1,560,706	+		HER17_RS07040	0.58	-0.7
1,560,741	+		HER17_RS07040	0.63	-0.3
1,560,762	+		HER17_RS07040	0.66	-0.1
1,560,843	+		HER17_RS07040	0.77	-1.1
1,560,865	-		HER17_RS07040	0.80	-0.3
1,560,880	+		HER17_RS07040	0.82	+0.2
1,560,881	-		HER17_RS07040	0.82	+0.3
1,560,881	-		HER17_RS07040	0.82	-0.6
1,560,892	+		HER17_RS07040	0.84	-0.3
1,560,919	+		HER17_RS07040	0.87	+0.7
1,560,919	+		HER17_RS07040	0.87	+0.1
1,560,919	+		HER17_RS07040	0.87	-0.4
1,560,919	+		HER17_RS07040	0.87	+0.2
1,560,919	+		HER17_RS07040	0.87	-0.5
1,560,920	-		HER17_RS07040	0.88	-0.2
1,560,920	-		HER17_RS07040	0.88	-1.6
1,560,920	-		HER17_RS07040	0.88	-0.1
1,560,920	-		HER17_RS07040	0.88	+0.1
1,560,941	+				+0.2
1,560,977	+				+0.4
1,560,977	+				-0.1
1,560,977	+				+0.5
1,560,978	-				-1.4
1,560,978	-				-1.4
1,560,978	-				+0.1
1,560,988	+				-0.9
1,560,989	-				-1.3
1,560,989	-				-0.0
1,560,989	-				-0.4
1,560,989	-				-0.1
1,560,989	-				+0.3
1,560,989	-				-0.1
1,560,989	-				+0.1
1,561,006	+				-0.5
1,561,102	+				-0.0
1,561,102	+				-1.3
1,561,124	+		HER17_RS07045	0.13	+0.5
1,561,124	+		HER17_RS07045	0.13	-1.2
1,561,161	-		HER17_RS07045	0.17	-0.2
1,561,165	+		HER17_RS07045	0.18	+0.8
1,561,166	-		HER17_RS07045	0.18	-0.5
1,561,268	-		HER17_RS07045	0.31	+0.3
1,561,315	+		HER17_RS07045	0.37	-0.1
1,561,316	-		HER17_RS07045	0.37	+0.3
1,561,387	+		HER17_RS07045	0.47	+0.8
1,561,388	-		HER17_RS07045	0.47	+0.4
1,561,397	+		HER17_RS07045	0.48	-0.6
1,561,397	+		HER17_RS07045	0.48	-0.1
1,561,397	+		HER17_RS07045	0.48	-0.8
1,561,470	+		HER17_RS07045	0.57	+1.0
1,561,511	+		HER17_RS07045	0.63	-0.5
1,561,512	-		HER17_RS07045	0.63	+0.0
1,561,563	-		HER17_RS07045	0.69	+0.2
1,561,692	-		HER17_RS07045	0.86	+1.5
1,561,712	-		HER17_RS07045	0.89	+0.2
1,561,712	-		HER17_RS07045	0.89	-0.4
1,561,797	+				-1.3
1,561,797	+				-0.5
1,561,797	+				+0.6
1,561,844	-				+0.1
1,561,844	-				-0.5
1,561,863	-				+1.0
1,561,871	-				-0.8
1,561,945	+				+0.2
1,561,994	+				+0.9
1,561,995	-				+0.9
1,562,027	-				+0.7
1,562,027	-				+0.8
1,562,075	+		HER17_RS07050	0.12	+2.4
1,562,150	+		HER17_RS07050	0.20	+0.4
1,562,150	+		HER17_RS07050	0.20	+0.4
1,562,151	-		HER17_RS07050	0.20	-0.4
1,562,151	-		HER17_RS07050	0.20	-0.9
1,562,206	+		HER17_RS07050	0.26	+0.7
1,562,244	+		HER17_RS07050	0.31	+0.4
1,562,245	-		HER17_RS07050	0.31	-0.2
1,562,249	-		HER17_RS07050	0.31	+0.1
1,562,273	-		HER17_RS07050	0.34	-0.1
1,562,273	-		HER17_RS07050	0.34	+0.1
1,562,287	+		HER17_RS07050	0.35	+0.1
1,562,287	+		HER17_RS07050	0.35	-0.1
1,562,287	+		HER17_RS07050	0.35	-0.6
1,562,287	+		HER17_RS07050	0.35	-0.3
1,562,288	-		HER17_RS07050	0.35	-0.2
1,562,288	-		HER17_RS07050	0.35	+0.8
1,562,288	-		HER17_RS07050	0.35	+0.3
1,562,289	+		HER17_RS07050	0.36	-0.5
1,562,289	+		HER17_RS07050	0.36	+0.5
1,562,289	+		HER17_RS07050	0.36	+0.8
1,562,289	+		HER17_RS07050	0.36	+1.5
1,562,289	+		HER17_RS07050	0.36	+0.1
1,562,289	+		HER17_RS07050	0.36	+1.4
1,562,290	-		HER17_RS07050	0.36	+0.4
1,562,290	-		HER17_RS07050	0.36	-0.4
1,562,290	-		HER17_RS07050	0.36	+0.4
1,562,290	-		HER17_RS07050	0.36	+0.4
1,562,290	-		HER17_RS07050	0.36	-0.1
1,562,464	+		HER17_RS07050	0.55	-0.7
1,562,465	-		HER17_RS07050	0.55	+0.5
1,562,465	-		HER17_RS07050	0.55	+0.1
1,562,520	+		HER17_RS07050	0.61	-0.4
1,562,520	+		HER17_RS07050	0.61	-0.3
1,562,521	-		HER17_RS07050	0.61	-0.0
1,562,523	+		HER17_RS07050	0.61	+0.4
1,562,524	-		HER17_RS07050	0.61	+1.0
1,562,546	-		HER17_RS07050	0.64	+0.1
1,562,576	+		HER17_RS07050	0.67	+1.1
1,562,662	+		HER17_RS07050	0.77	+0.7
1,562,663	-		HER17_RS07050	0.77	+1.4
1,562,716	+		HER17_RS07050	0.83	+0.6
1,562,717	-		HER17_RS07050	0.83	+0.9
1,562,717	-		HER17_RS07050	0.83	-0.6
1,562,734	-		HER17_RS07050	0.85	-2.6
1,562,761	+		HER17_RS07050	0.88	-0.2