Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06315

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,397,740	-		HER17_RS06310	0.66	+0.7
1,397,766	+		HER17_RS06310	0.68	+0.1
1,397,786	+		HER17_RS06310	0.69	+0.4
1,397,786	+		HER17_RS06310	0.69	-1.1
1,397,787	-		HER17_RS06310	0.69	-0.5
1,397,787	-		HER17_RS06310	0.69	+0.8
1,397,788	+		HER17_RS06310	0.69	-1.0
1,397,788	+		HER17_RS06310	0.69	-0.5
1,397,789	-		HER17_RS06310	0.69	+0.5
1,397,789	-		HER17_RS06310	0.69	+0.5
1,397,789	-		HER17_RS06310	0.69	-1.2
1,397,927	+		HER17_RS06310	0.79	+0.2
1,397,927	+		HER17_RS06310	0.79	+0.3
1,397,928	-		HER17_RS06310	0.79	-0.8
1,397,928	-		HER17_RS06310	0.79	-1.2
1,397,931	+		HER17_RS06310	0.79	+0.9
1,397,932	-		HER17_RS06310	0.79	-0.0
1,398,023	-		HER17_RS06310	0.85	+0.1
1,398,023	-		HER17_RS06310	0.85	-0.5
1,398,044	+		HER17_RS06310	0.87	-1.0
1,398,044	+		HER17_RS06310	0.87	-0.5
1,398,045	-		HER17_RS06310	0.87	+1.1
1,398,045	-		HER17_RS06310	0.87	+0.0
1,398,045	-		HER17_RS06310	0.87	-0.1
1,398,045	-		HER17_RS06310	0.87	-0.4
1,398,122	+				+0.3
1,398,204	+				+0.2
1,398,451	-				-0.9
1,398,458	+				-0.1
1,398,459	-				+0.8
1,398,461	+				+0.6
1,398,461	+				-0.1
1,398,461	+				+0.1
1,398,500	+				-1.0
1,398,500	+				-0.2
1,398,500	+				-0.3
1,398,501	-				+0.9
1,398,501	-				+0.2
1,398,563	+				+0.3
1,398,563	+				+0.0
1,398,564	-				-0.6
1,398,564	-				-0.5
1,398,576	-				-0.2
1,398,601	-				-0.0
1,398,608	+				-0.3
1,398,609	-				+0.5
1,398,609	-				-0.1
1,398,609	-				-0.2
1,398,609	-				-0.1
1,398,609	-				-0.0
1,398,611	+				+0.0
1,398,611	+				+0.8
1,398,612	-				-0.7
1,398,626	-				+1.3
1,398,680	-				+0.9
1,398,705	+				-0.3
1,398,705	+				-0.2
1,398,705	+				-0.2
1,398,705	+				+0.1
1,398,721	+				+0.1
1,398,721	+				+0.6
1,398,721	+				-2.5
1,398,722	-				-0.9
1,398,723	+				-0.5
1,398,723	+				-0.9
1,398,723	+				+1.6
1,398,724	-				+0.1
1,398,724	-				+0.5
1,398,857	-				-0.8
1,399,098	+		HER17_RS06315	0.15	-0.2
1,399,098	+		HER17_RS06315	0.15	-0.0
1,399,098	+		HER17_RS06315	0.15	+0.3
1,399,098	+		HER17_RS06315	0.15	+0.1
1,399,099	-		HER17_RS06315	0.15	+0.4
1,399,099	-		HER17_RS06315	0.15	+0.0
1,399,099	-		HER17_RS06315	0.15	-0.0
1,399,126	+		HER17_RS06315	0.16	+0.5
1,399,126	+		HER17_RS06315	0.16	+0.2
1,399,126	+		HER17_RS06315	0.16	-0.5
1,399,127	-		HER17_RS06315	0.16	+1.6
1,399,127	-		HER17_RS06315	0.16	-0.1
1,399,128	+		HER17_RS06315	0.16	-0.2
1,399,128	+		HER17_RS06315	0.16	-0.6
1,399,128	+		HER17_RS06315	0.16	-0.1
1,399,128	+		HER17_RS06315	0.16	-0.4
1,399,129	-		HER17_RS06315	0.16	-0.6
1,399,129	-		HER17_RS06315	0.16	+0.5
1,399,129	-		HER17_RS06315	0.16	+0.0
1,399,129	-		HER17_RS06315	0.16	+0.6
1,399,129	-		HER17_RS06315	0.16	-1.2
1,399,257	-		HER17_RS06315	0.20	-0.0
1,399,381	-		HER17_RS06315	0.24	+0.5
1,399,400	-		HER17_RS06315	0.25	+0.1
1,399,400	-		HER17_RS06315	0.25	+0.8
1,399,400	-		HER17_RS06315	0.25	-0.3
1,399,400	-		HER17_RS06315	0.25	+0.2
1,399,408	+		HER17_RS06315	0.25	-0.1
1,399,452	+		HER17_RS06315	0.26	-0.5
1,399,452	+		HER17_RS06315	0.26	-0.5
1,399,480	+		HER17_RS06315	0.27	-0.5
1,399,480	+		HER17_RS06315	0.27	+2.0
1,399,480	+		HER17_RS06315	0.27	-0.0
1,399,480	+		HER17_RS06315	0.27	+0.9
1,399,480	+		HER17_RS06315	0.27	-0.3
1,399,480	+		HER17_RS06315	0.27	-0.1
1,399,480	+		HER17_RS06315	0.27	-1.1
1,399,481	-		HER17_RS06315	0.27	+0.2
1,399,481	-		HER17_RS06315	0.27	-1.5
1,399,481	-		HER17_RS06315	0.27	+0.3
1,399,481	-		HER17_RS06315	0.27	-1.0
1,399,481	-		HER17_RS06315	0.27	+1.5
1,399,481	-		HER17_RS06315	0.27	-0.8
1,399,481	-		HER17_RS06315	0.27	+0.1
1,399,481	-		HER17_RS06315	0.27	-0.8
1,399,481	-		HER17_RS06315	0.27	+0.4
1,399,481	-		HER17_RS06315	0.27	-0.0
1,399,481	-		HER17_RS06315	0.27	+0.0
1,399,481	-		HER17_RS06315	0.27	-0.3
1,399,481	-		HER17_RS06315	0.27	-0.2
1,399,481	-		HER17_RS06315	0.27	+1.2
1,399,481	-		HER17_RS06315	0.27	-0.2
1,399,482	+		HER17_RS06315	0.27	-0.3
1,399,482	+		HER17_RS06315	0.27	-0.3
1,399,483	-		HER17_RS06315	0.27	-1.0
1,399,501	-		HER17_RS06315	0.28	-0.2
1,399,731	+		HER17_RS06315	0.35	-0.7
1,399,732	-		HER17_RS06315	0.36	+0.8
1,399,732	-		HER17_RS06315	0.36	+1.9
1,399,856	+		HER17_RS06315	0.40	+0.1
1,399,857	-		HER17_RS06315	0.40	-0.6
1,399,889	-		HER17_RS06315	0.41	+0.0
1,399,889	-		HER17_RS06315	0.41	-0.1
1,400,088	+		HER17_RS06315	0.47	-0.5
1,400,088	+		HER17_RS06315	0.47	-1.5
1,400,089	-		HER17_RS06315	0.47	+0.2
1,400,198	+		HER17_RS06315	0.51	-0.7
1,400,411	+		HER17_RS06315	0.58	+0.0
1,400,492	-		HER17_RS06315	0.60	+0.3
1,400,542	+		HER17_RS06315	0.62	+0.9
1,400,542	+		HER17_RS06315	0.62	+0.7
1,400,586	+		HER17_RS06315	0.63	-0.0
1,400,586	+		HER17_RS06315	0.63	-0.2
1,400,586	+		HER17_RS06315	0.63	-0.7
1,400,587	-		HER17_RS06315	0.63	+1.5
1,400,587	-		HER17_RS06315	0.63	+0.6
1,400,587	-		HER17_RS06315	0.63	-0.2
1,400,587	-		HER17_RS06315	0.63	-0.1
1,400,587	-		HER17_RS06315	0.63	+1.1
1,400,587	-		HER17_RS06315	0.63	-1.6
1,400,590	+		HER17_RS06315	0.63	-0.1
1,400,683	+		HER17_RS06315	0.66	-0.1
1,400,775	-		HER17_RS06315	0.69	-0.6
1,400,933	+		HER17_RS06315	0.74	-0.1
1,400,934	-		HER17_RS06315	0.75	-0.5
1,400,976	+		HER17_RS06315	0.76	+0.3
1,400,976	+		HER17_RS06315	0.76	-0.6
1,400,997	+		HER17_RS06315	0.77	+0.5
1,400,998	-		HER17_RS06315	0.77	-1.2
1,401,033	-		HER17_RS06315	0.78	+0.4
1,401,033	-		HER17_RS06315	0.78	-1.8
1,401,107	+		HER17_RS06315	0.80	-0.8
1,401,108	-		HER17_RS06315	0.80	-0.0
1,401,133	+		HER17_RS06315	0.81	+1.2
1,401,242	-		HER17_RS06315	0.85	+0.4
1,401,242	-		HER17_RS06315	0.85	+0.3
1,401,273	+		HER17_RS06315	0.86	+0.1
1,401,273	+		HER17_RS06315	0.86	-0.6
1,401,273	+		HER17_RS06315	0.86	+1.4
1,401,273	+		HER17_RS06315	0.86	+0.3
1,401,273	+		HER17_RS06315	0.86	-1.2
1,401,273	+		HER17_RS06315	0.86	-0.0
1,401,274	-		HER17_RS06315	0.86	-0.3
1,401,333	+		HER17_RS06315	0.87	-0.5
1,401,334	-		HER17_RS06315	0.88	+0.5
1,401,419	-				-0.3
1,401,433	+				+0.1
1,401,454	+				-0.9
1,401,454	+				-0.3
1,401,455	-				-0.5
1,401,455	-				-0.2
1,401,457	+				-0.8
1,401,638	+				+0.3
1,401,639	-				-0.4
1,401,641	+				-0.1
1,401,641	+				+0.5
1,401,642	-				+0.4
1,401,782	+				-0.1
1,401,782	+				-0.9
1,401,840	+				-0.7
1,401,840	+				-1.0
1,401,841	-				+1.0
1,401,841	-				-0.7
1,401,965	+				-1.8
1,401,977	+				-0.2
1,401,978	-				-0.7
1,402,149	+		HER17_RS06320	0.14	-0.3
1,402,173	+		HER17_RS06320	0.15	-1.5
1,402,173	+		HER17_RS06320	0.15	+0.2
1,402,174	-		HER17_RS06320	0.15	-1.1
1,402,174	-		HER17_RS06320	0.15	+0.8
1,402,185	-		HER17_RS06320	0.15	+1.7
1,402,186	+		HER17_RS06320	0.15	-0.1
1,402,187	-		HER17_RS06320	0.15	+0.1
1,402,187	-		HER17_RS06320	0.15	-1.0
1,402,205	+		HER17_RS06320	0.16	+0.2
1,402,205	+		HER17_RS06320	0.16	-1.0
1,402,205	+		HER17_RS06320	0.16	-0.4
1,402,206	-		HER17_RS06320	0.16	+0.1
1,402,206	-		HER17_RS06320	0.16	-0.3
1,402,206	-		HER17_RS06320	0.16	+0.5
1,402,206	-		HER17_RS06320	0.16	-0.2
1,402,206	-		HER17_RS06320	0.16	+0.8
1,402,206	-		HER17_RS06320	0.16	-1.1
1,402,576	-		HER17_RS06320	0.28	-0.8
1,402,577	+		HER17_RS06320	0.28	-1.2
1,402,577	+		HER17_RS06320	0.28	+0.5
1,402,577	+		HER17_RS06320	0.28	-0.8
1,402,577	+		HER17_RS06320	0.28	+0.4
1,402,577	+		HER17_RS06320	0.28	-0.1
1,402,577	+		HER17_RS06320	0.28	-0.3
1,402,578	-		HER17_RS06320	0.28	+0.5
1,402,578	-		HER17_RS06320	0.28	-0.8
1,402,578	-		HER17_RS06320	0.28	+0.1
1,402,578	-		HER17_RS06320	0.28	-0.0
1,402,578	-		HER17_RS06320	0.28	+0.5
1,402,614	-		HER17_RS06320	0.29	+0.1
1,402,614	-		HER17_RS06320	0.29	+0.4
1,402,614	-		HER17_RS06320	0.29	-1.3
1,402,641	+		HER17_RS06320	0.30	+0.5
1,402,641	+		HER17_RS06320	0.30	+0.5
1,402,641	+		HER17_RS06320	0.30	-0.1
1,402,641	+		HER17_RS06320	0.30	+0.5
1,402,641	+		HER17_RS06320	0.30	-1.5
1,402,642	-		HER17_RS06320	0.30	-0.1
1,402,642	-		HER17_RS06320	0.30	+0.5
1,402,642	-		HER17_RS06320	0.30	+0.8
1,402,642	-		HER17_RS06320	0.30	-0.1
1,402,642	-		HER17_RS06320	0.30	-0.4