Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05015

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,132,213	+		HER17_RS05010	0.25	+0.2
1,132,271	-		HER17_RS05010	0.32	-0.7
1,132,351	+		HER17_RS05010	0.41	-0.3
1,132,351	+		HER17_RS05010	0.41	-0.5
1,132,355	+		HER17_RS05010	0.41	-0.3
1,132,355	+		HER17_RS05010	0.41	+0.8
1,132,356	-		HER17_RS05010	0.41	+0.1
1,132,356	-		HER17_RS05010	0.41	+0.2
1,132,356	-		HER17_RS05010	0.41	+0.3
1,132,356	-		HER17_RS05010	0.41	-1.9
1,132,500	+		HER17_RS05010	0.58	-0.1
1,132,537	+		HER17_RS05010	0.62	+0.0
1,132,563	+		HER17_RS05010	0.65	-0.4
1,132,563	+		HER17_RS05010	0.65	-0.1
1,132,563	+		HER17_RS05010	0.65	+0.5
1,132,564	-		HER17_RS05010	0.65	-0.8
1,132,624	+		HER17_RS05010	0.72	+0.3
1,132,874	+				+1.2
1,132,874	+				-0.3
1,132,875	-				-0.7
1,132,875	-				+1.2
1,132,890	-				+0.9
1,132,926	+				+0.7
1,132,927	-				-0.1
1,132,936	+				+0.6
1,132,936	+				+0.5
1,132,936	+				+0.6
1,132,936	+				+0.4
1,132,936	+				+1.0
1,132,936	+				-0.8
1,132,937	-				+0.6
1,132,937	-				+0.9
1,132,937	-				+0.1
1,132,986	+				-1.4
1,132,986	+				-0.6
1,132,986	+				-0.2
1,132,987	-				-0.1
1,132,987	-				+0.3
1,132,998	+				+0.1
1,132,999	-				-0.3
1,133,049	-				-0.3
1,133,094	+				-0.1
1,133,094	+				-0.5
1,133,095	-				+0.0
1,133,095	-				-1.2
1,133,095	-				-0.5
1,133,098	+				-0.1
1,133,098	+				+0.3
1,133,098	+				-0.4
1,133,098	+				-0.2
1,133,098	+				-0.1
1,133,099	-				+0.1
1,133,099	-				-1.3
1,133,099	-				-0.5
1,133,102	-				+0.0
1,133,139	+		HER17_RS05015	0.12	-0.1
1,133,140	-		HER17_RS05015	0.12	-0.8
1,133,189	-		HER17_RS05015	0.16	+0.0
1,133,205	-		HER17_RS05015	0.18	-0.3
1,133,226	+		HER17_RS05015	0.20	+1.2
1,133,321	+		HER17_RS05015	0.28	-0.1
1,133,321	+		HER17_RS05015	0.28	+0.2
1,133,442	-		HER17_RS05015	0.38	+1.2
1,133,444	+		HER17_RS05015	0.38	-1.9
1,133,444	+		HER17_RS05015	0.38	+0.8
1,133,444	+		HER17_RS05015	0.38	+0.6
1,133,445	-		HER17_RS05015	0.38	+1.2
1,133,445	-		HER17_RS05015	0.38	-0.1
1,133,723	-		HER17_RS05015	0.61	+0.3
1,133,891	+		HER17_RS05015	0.75	+0.1
1,133,891	+		HER17_RS05015	0.75	+0.5
1,133,892	-		HER17_RS05015	0.75	-0.3
1,133,892	-		HER17_RS05015	0.75	-0.3
1,133,954	+		HER17_RS05015	0.81	-0.1
1,133,954	+		HER17_RS05015	0.81	+0.3
1,133,954	+		HER17_RS05015	0.81	+0.4
1,133,954	+		HER17_RS05015	0.81	-0.1
1,133,955	-		HER17_RS05015	0.81	-0.5
1,133,955	-		HER17_RS05015	0.81	+0.1
1,133,955	-		HER17_RS05015	0.81	-0.6
1,133,966	+		HER17_RS05015	0.82	+0.1
1,133,989	+		HER17_RS05015	0.84	+0.2
1,133,989	+		HER17_RS05015	0.84	+0.4
1,134,021	+		HER17_RS05015	0.86	-0.0
1,134,021	+		HER17_RS05015	0.86	+0.2
1,134,022	-		HER17_RS05015	0.86	-0.1
1,134,029	+		HER17_RS05015	0.87	-0.3
1,134,029	+		HER17_RS05015	0.87	+0.4
1,134,141	+				+0.9
1,134,141	+				-0.0
1,134,142	-				-0.2
1,134,186	-				-0.3
1,134,186	-				+0.1
1,134,186	-				-0.4
1,134,186	-				+0.0
1,134,186	-				+0.4
1,134,218	+				-1.1
1,134,219	-				+0.4
1,134,219	-				-1.6
1,134,252	-				+0.2
1,134,260	+				-0.3
1,134,260	+				-0.2
1,134,261	-				+0.5
1,134,271	+				-0.4
1,134,271	+				+0.3
1,134,272	-				+0.2
1,134,272	-				-0.0
1,134,287	+				-0.3
1,134,287	+				-0.3
1,134,288	-				+0.8
1,134,288	-				+0.2
1,134,288	-				+0.1
1,134,288	-				+0.9
1,134,288	-				+0.7
1,134,288	-				+2.1
1,134,288	-				+1.6
1,134,290	+				+0.7
1,134,290	+				+1.4
1,134,291	-				+0.3
1,134,291	-				-0.3
1,134,292	+				-0.8
1,134,292	+				-0.5
1,134,292	+				-0.4
1,134,306	+				-0.2
1,134,306	+				+0.2
1,134,306	+				+0.2
1,134,306	+				+0.1
1,134,306	+				-0.4
1,134,306	+				-1.4
1,134,306	+				+0.8
1,134,306	+				-0.6
1,134,307	-				+1.4
1,134,307	-				-2.4
1,134,307	-				-0.1
1,134,307	-				+0.2
1,134,307	-				+0.2
1,134,308	+				+0.3
1,134,308	+				-0.6
1,134,308	+				-0.6
1,134,309	-				+0.0
1,134,309	-				-0.8
1,134,330	+				+1.6
1,134,356	+				-0.0
1,134,356	+				+0.4
1,134,356	+				-0.2
1,134,357	-				+0.2
1,134,376	+				-0.9
1,134,376	+				+0.5
1,134,377	-				+0.4
1,134,377	-				+0.6
1,134,377	-				-0.4
1,134,387	+				-0.2
1,134,452	-				+1.1
1,134,452	-				+0.1
1,134,530	-				+0.4
1,134,584	+				+0.5
1,134,585	-				+1.5
1,134,671	+		HER17_RS05020	0.14	-0.5
1,134,672	-		HER17_RS05020	0.14	+0.3
1,134,703	-		HER17_RS05020	0.16	+0.6
1,134,817	+		HER17_RS05020	0.23	-0.1
1,134,817	+		HER17_RS05020	0.23	+0.4
1,134,817	+		HER17_RS05020	0.23	-0.1
1,134,817	+		HER17_RS05020	0.23	+1.2
1,134,817	+		HER17_RS05020	0.23	+0.7
1,134,818	-		HER17_RS05020	0.23	-0.5
1,134,818	-		HER17_RS05020	0.23	-0.1
1,134,818	-		HER17_RS05020	0.23	+0.5
1,134,818	-		HER17_RS05020	0.23	-0.8
1,134,818	-		HER17_RS05020	0.23	+0.1
1,134,818	-		HER17_RS05020	0.23	+0.4
1,134,818	-		HER17_RS05020	0.23	+1.1
1,134,821	+		HER17_RS05020	0.23	-0.0
1,134,822	-		HER17_RS05020	0.23	+0.7
1,134,822	-		HER17_RS05020	0.23	+0.5
1,134,907	+		HER17_RS05020	0.29	+0.1
1,134,908	-		HER17_RS05020	0.29	-0.0
1,135,017	+		HER17_RS05020	0.35	-0.1
1,135,108	-		HER17_RS05020	0.41	+1.7
1,135,127	+		HER17_RS05020	0.42	-1.0
1,135,154	+		HER17_RS05020	0.44	-0.0
1,135,154	+		HER17_RS05020	0.44	-0.8
1,135,164	+		HER17_RS05020	0.45	-0.7
1,135,165	-		HER17_RS05020	0.45	-0.3
1,135,165	-		HER17_RS05020	0.45	+0.3
1,135,165	-		HER17_RS05020	0.45	+0.6
1,135,165	-		HER17_RS05020	0.45	-0.0