Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04360 and HER17_RS04365 overlap by 4 nucleotides HER17_RS04365 and HER17_RS04370 are separated by 389 nucleotides HER17_RS04370 and HER17_RS04375 are separated by 65 nucleotides HER17_RS04375 and HER17_RS04380 overlap by 8 nucleotides
HER17_RS04360: HER17_RS04360 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 994,175 to 994,891
_RS04360
HER17_RS04365: HER17_RS04365 - Rcs stress response system protein RcsF, at 994,888 to 995,298
_RS04365
HER17_RS04370: HER17_RS04370 - MetQ/NlpA family lipoprotein, at 995,688 to 996,503
_RS04370
HER17_RS04375: HER17_RS04375 - methionine ABC transporter permease MetI, at 996,569 to 997,222
_RS04375
HER17_RS04380: HER17_RS04380 - methionine ABC transporter ATP-binding protein MetN, at 997,215 to 998,246
_RS04380
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 994.767 kb on + strand, within HER17_RS04360 at 994.767 kb on + strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.775 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.779 kb on - strand, within HER17_RS04360 at 994.845 kb on + strand at 994.845 kb on + strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.936 kb on - strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 995.025 kb on + strand, within HER17_RS04365 at 995.026 kb on - strand, within HER17_RS04365 at 995.120 kb on - strand, within HER17_RS04365 at 995.136 kb on + strand, within HER17_RS04365 at 995.136 kb on + strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.139 kb on - strand, within HER17_RS04365 at 995.139 kb on - strand, within HER17_RS04365 at 995.140 kb on + strand, within HER17_RS04365 at 995.140 kb on + strand, within HER17_RS04365 at 995.141 kb on - strand, within HER17_RS04365 at 995.141 kb on - strand, within HER17_RS04365 at 995.178 kb on + strand, within HER17_RS04365 at 995.191 kb on + strand, within HER17_RS04365 at 995.191 kb on + strand, within HER17_RS04365 at 995.208 kb on + strand, within HER17_RS04365 at 995.245 kb on + strand, within HER17_RS04365 at 995.246 kb on - strand, within HER17_RS04365 at 995.278 kb on + strand at 995.278 kb on + strand at 995.278 kb on + strand at 995.278 kb on + strand at 995.278 kb on + strand at 995.280 kb on + strand at 995.280 kb on + strand at 995.280 kb on + strand at 995.280 kb on + strand at 995.281 kb on - strand at 995.382 kb on - strand at 995.387 kb on + strand at 995.388 kb on - strand at 995.394 kb on + strand at 995.395 kb on - strand at 995.395 kb on - strand at 995.407 kb on - strand at 995.408 kb on + strand at 995.409 kb on - strand at 995.409 kb on - strand at 995.447 kb on + strand at 995.507 kb on + strand at 995.507 kb on + strand at 995.542 kb on + strand at 995.542 kb on + strand at 995.542 kb on + strand at 995.543 kb on - strand at 995.543 kb on - strand at 995.593 kb on - strand at 995.593 kb on - strand at 995.821 kb on - strand, within HER17_RS04370 at 995.821 kb on - strand, within HER17_RS04370 at 995.825 kb on - strand, within HER17_RS04370 at 995.890 kb on + strand, within HER17_RS04370 at 995.890 kb on + strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.931 kb on + strand, within HER17_RS04370 at 995.931 kb on + strand, within HER17_RS04370 at 995.931 kb on + strand, within HER17_RS04370 at 996.180 kb on - strand, within HER17_RS04370 at 996.180 kb on - strand, within HER17_RS04370 at 996.180 kb on - strand, within HER17_RS04370 at 996.187 kb on - strand, within HER17_RS04370 at 996.232 kb on + strand, within HER17_RS04370 at 996.232 kb on + strand, within HER17_RS04370 at 996.298 kb on + strand, within HER17_RS04370 at 996.306 kb on - strand, within HER17_RS04370 at 996.315 kb on + strand, within HER17_RS04370 at 996.316 kb on - strand, within HER17_RS04370 at 996.334 kb on + strand, within HER17_RS04370 at 996.335 kb on - strand, within HER17_RS04370 at 996.405 kb on - strand, within HER17_RS04370 at 996.407 kb on + strand, within HER17_RS04370 at 996.407 kb on + strand, within HER17_RS04370 at 996.407 kb on + strand, within HER17_RS04370 at 996.413 kb on + strand, within HER17_RS04370 at 996.483 kb on - strand at 996.495 kb on - strand at 996.515 kb on + strand at 996.516 kb on - strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.556 kb on + strand at 996.570 kb on + strand at 996.570 kb on + strand at 996.590 kb on + strand at 996.590 kb on + strand at 996.638 kb on + strand, within HER17_RS04375 at 996.641 kb on + strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.644 kb on + strand, within HER17_RS04375 at 996.644 kb on + strand, within HER17_RS04375 at 996.645 kb on - strand, within HER17_RS04375 at 996.645 kb on - strand, within HER17_RS04375 at 996.648 kb on - strand, within HER17_RS04375 at 996.652 kb on + strand, within HER17_RS04375 at 996.671 kb on - strand, within HER17_RS04375 at 996.673 kb on - strand, within HER17_RS04375 at 996.673 kb on - strand, within HER17_RS04375 at 996.679 kb on + strand, within HER17_RS04375 at 996.679 kb on + strand, within HER17_RS04375 at 996.680 kb on - strand, within HER17_RS04375 at 996.681 kb on + strand, within HER17_RS04375 at 996.681 kb on + strand, within HER17_RS04375 at 996.681 kb on + strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.684 kb on - strand, within HER17_RS04375 at 996.687 kb on + strand, within HER17_RS04375 at 996.688 kb on - strand, within HER17_RS04375 at 996.688 kb on - strand, within HER17_RS04375 at 996.708 kb on - strand, within HER17_RS04375 at 996.708 kb on - strand, within HER17_RS04375 at 996.744 kb on + strand, within HER17_RS04375 at 996.745 kb on - strand, within HER17_RS04375 at 996.749 kb on + strand, within HER17_RS04375 at 996.750 kb on - strand, within HER17_RS04375 at 996.750 kb on - strand, within HER17_RS04375 at 996.758 kb on - strand, within HER17_RS04375 at 996.762 kb on - strand, within HER17_RS04375 at 996.762 kb on - strand, within HER17_RS04375 at 996.781 kb on + strand, within HER17_RS04375 at 996.782 kb on - strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.934 kb on + strand, within HER17_RS04375 at 996.935 kb on - strand, within HER17_RS04375 at 996.935 kb on - strand, within HER17_RS04375 at 996.935 kb on - strand, within HER17_RS04375 at 997.016 kb on - strand, within HER17_RS04375 at 997.016 kb on - strand, within HER17_RS04375 at 997.039 kb on + strand, within HER17_RS04375 at 997.039 kb on + strand, within HER17_RS04375 at 997.040 kb on - strand, within HER17_RS04375 at 997.044 kb on - strand, within HER17_RS04375 at 997.066 kb on - strand, within HER17_RS04375 at 997.106 kb on - strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.108 kb on - strand, within HER17_RS04375 at 997.108 kb on - strand, within HER17_RS04375 at 997.121 kb on + strand, within HER17_RS04375 at 997.122 kb on - strand, within HER17_RS04375 at 997.127 kb on + strand, within HER17_RS04375 at 997.128 kb on - strand, within HER17_RS04375 at 997.128 kb on - strand, within HER17_RS04375 at 997.200 kb on - strand at 997.222 kb on + strand at 997.223 kb on - strand at 997.242 kb on - strand at 997.280 kb on + strand at 997.339 kb on + strand, within HER17_RS04380 at 997.358 kb on + strand, within HER17_RS04380 at 997.358 kb on + strand, within HER17_RS04380 at 997.358 kb on + strand, within HER17_RS04380 at 997.422 kb on - strand, within HER17_RS04380 at 997.444 kb on - strand, within HER17_RS04380 at 997.444 kb on - strand, within HER17_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 994,767 + HER17_RS04360 0.83 -0.0 994,767 + HER17_RS04360 0.83 -0.7 994,768 - HER17_RS04360 0.83 +1.1 994,768 - HER17_RS04360 0.83 +0.5 994,768 - HER17_RS04360 0.83 -0.1 994,768 - HER17_RS04360 0.83 +1.8 994,768 - HER17_RS04360 0.83 -0.4 994,768 - HER17_RS04360 0.83 -0.8 994,775 + HER17_RS04360 0.84 -0.8 994,778 + HER17_RS04360 0.84 -0.3 994,778 + HER17_RS04360 0.84 +0.3 994,778 + HER17_RS04360 0.84 -0.1 994,778 + HER17_RS04360 0.84 +1.0 994,778 + HER17_RS04360 0.84 +1.0 994,778 + HER17_RS04360 0.84 +0.9 994,779 - HER17_RS04360 0.84 -0.7 994,845 + +0.2 994,845 + -1.9 994,846 - +0.6 994,846 - +0.3 994,846 - +0.3 994,846 - -1.0 994,936 - HER17_RS04365 0.12 +0.4 994,937 + HER17_RS04365 0.12 -0.3 994,937 + HER17_RS04365 0.12 -0.5 994,937 + HER17_RS04365 0.12 +0.7 994,937 + HER17_RS04365 0.12 -0.2 994,937 + HER17_RS04365 0.12 -1.3 994,938 - HER17_RS04365 0.12 +0.6 994,938 - HER17_RS04365 0.12 +0.4 994,938 - HER17_RS04365 0.12 +0.5 994,938 - HER17_RS04365 0.12 +0.7 995,025 + HER17_RS04365 0.33 -0.4 995,026 - HER17_RS04365 0.34 +0.7 995,120 - HER17_RS04365 0.56 -1.3 995,136 + HER17_RS04365 0.60 +0.5 995,136 + HER17_RS04365 0.60 -0.3 995,137 - HER17_RS04365 0.61 -0.3 995,137 - HER17_RS04365 0.61 +0.7 995,137 - HER17_RS04365 0.61 +0.2 995,137 - HER17_RS04365 0.61 -0.0 995,139 - HER17_RS04365 0.61 +0.7 995,139 - HER17_RS04365 0.61 -0.5 995,140 + HER17_RS04365 0.61 -0.3 995,140 + HER17_RS04365 0.61 -0.6 995,141 - HER17_RS04365 0.62 +1.2 995,141 - HER17_RS04365 0.62 +2.0 995,178 + HER17_RS04365 0.71 -0.4 995,191 + HER17_RS04365 0.74 +0.5 995,191 + HER17_RS04365 0.74 +0.6 995,208 + HER17_RS04365 0.78 -1.7 995,245 + HER17_RS04365 0.87 +0.6 995,246 - HER17_RS04365 0.87 +1.1 995,278 + +0.7 995,278 + +0.2 995,278 + +0.4 995,278 + +0.3 995,278 + -0.9 995,280 + -0.7 995,280 + -0.8 995,280 + +3.8 995,280 + +0.3 995,281 - +0.6 995,382 - -0.1 995,387 + -0.2 995,388 - -0.6 995,394 + -0.5 995,395 - -1.0 995,395 - +0.3 995,407 - +0.7 995,408 + +0.6 995,409 - +0.8 995,409 - -1.6 995,447 + -0.3 995,507 + -0.1 995,507 + -0.8 995,542 + -0.2 995,542 + -0.1 995,542 + +0.8 995,543 - +0.2 995,543 - -1.2 995,593 - -0.4 995,593 - -0.4 995,821 - HER17_RS04370 0.16 +0.4 995,821 - HER17_RS04370 0.16 -2.2 995,825 - HER17_RS04370 0.17 +0.6 995,890 + HER17_RS04370 0.25 +0.2 995,890 + HER17_RS04370 0.25 -0.0 995,891 - HER17_RS04370 0.25 +0.4 995,891 - HER17_RS04370 0.25 +1.8 995,891 - HER17_RS04370 0.25 +1.3 995,891 - HER17_RS04370 0.25 +0.4 995,891 - HER17_RS04370 0.25 +0.5 995,891 - HER17_RS04370 0.25 -0.4 995,931 + HER17_RS04370 0.30 -0.6 995,931 + HER17_RS04370 0.30 -1.8 995,931 + HER17_RS04370 0.30 +0.4 996,180 - HER17_RS04370 0.60 +1.1 996,180 - HER17_RS04370 0.60 -0.1 996,180 - HER17_RS04370 0.60 +0.4 996,187 - HER17_RS04370 0.61 +1.2 996,232 + HER17_RS04370 0.67 +0.1 996,232 + HER17_RS04370 0.67 -0.0 996,298 + HER17_RS04370 0.75 -0.7 996,306 - HER17_RS04370 0.76 +0.3 996,315 + HER17_RS04370 0.77 -0.0 996,316 - HER17_RS04370 0.77 +1.6 996,334 + HER17_RS04370 0.79 -0.3 996,335 - HER17_RS04370 0.79 +0.3 996,405 - HER17_RS04370 0.88 +0.7 996,407 + HER17_RS04370 0.88 +0.9 996,407 + HER17_RS04370 0.88 -0.0 996,407 + HER17_RS04370 0.88 +0.9 996,413 + HER17_RS04370 0.89 -0.0 996,483 - -0.9 996,495 - -0.2 996,515 + -0.3 996,516 - +0.5 996,519 + +0.3 996,519 + +0.7 996,519 + +0.7 996,556 + +0.6 996,570 + +0.5 996,570 + +2.0 996,590 + -0.1 996,590 + -0.5 996,638 + HER17_RS04375 0.11 -0.9 996,641 + HER17_RS04375 0.11 -0.8 996,642 - HER17_RS04375 0.11 -0.7 996,642 - HER17_RS04375 0.11 +1.5 996,642 - HER17_RS04375 0.11 -2.6 996,642 - HER17_RS04375 0.11 +2.4 996,642 - HER17_RS04375 0.11 +0.2 996,644 + HER17_RS04375 0.11 +0.3 996,644 + HER17_RS04375 0.11 +1.7 996,645 - HER17_RS04375 0.12 -0.4 996,645 - HER17_RS04375 0.12 +0.8 996,648 - HER17_RS04375 0.12 +0.3 996,652 + HER17_RS04375 0.13 +1.2 996,671 - HER17_RS04375 0.16 -0.0 996,673 - HER17_RS04375 0.16 -0.7 996,673 - HER17_RS04375 0.16 -0.3 996,679 + HER17_RS04375 0.17 +0.2 996,679 + HER17_RS04375 0.17 -1.0 996,680 - HER17_RS04375 0.17 +0.7 996,681 + HER17_RS04375 0.17 +0.4 996,681 + HER17_RS04375 0.17 -0.6 996,681 + HER17_RS04375 0.17 -1.0 996,682 - HER17_RS04375 0.17 -1.5 996,682 - HER17_RS04375 0.17 +0.5 996,682 - HER17_RS04375 0.17 -1.0 996,682 - HER17_RS04375 0.17 +3.6 996,684 - HER17_RS04375 0.18 -0.6 996,687 + HER17_RS04375 0.18 -0.1 996,688 - HER17_RS04375 0.18 -0.6 996,688 - HER17_RS04375 0.18 -0.8 996,708 - HER17_RS04375 0.21 +0.0 996,708 - HER17_RS04375 0.21 -1.0 996,744 + HER17_RS04375 0.27 +0.1 996,745 - HER17_RS04375 0.27 -1.0 996,749 + HER17_RS04375 0.28 -0.7 996,750 - HER17_RS04375 0.28 -0.3 996,750 - HER17_RS04375 0.28 -1.0 996,758 - HER17_RS04375 0.29 -0.2 996,762 - HER17_RS04375 0.30 -0.0 996,762 - HER17_RS04375 0.30 -0.8 996,781 + HER17_RS04375 0.32 +0.1 996,782 - HER17_RS04375 0.33 +0.4 996,929 + HER17_RS04375 0.55 -1.3 996,929 + HER17_RS04375 0.55 -0.3 996,929 + HER17_RS04375 0.55 +0.0 996,929 + HER17_RS04375 0.55 -1.5 996,929 + HER17_RS04375 0.55 +0.7 996,929 + HER17_RS04375 0.55 +0.9 996,929 + HER17_RS04375 0.55 -0.0 996,930 - HER17_RS04375 0.55 -0.1 996,930 - HER17_RS04375 0.55 -0.1 996,930 - HER17_RS04375 0.55 -0.4 996,930 - HER17_RS04375 0.55 +0.7 996,934 + HER17_RS04375 0.56 -0.1 996,935 - HER17_RS04375 0.56 -0.5 996,935 - HER17_RS04375 0.56 +0.3 996,935 - HER17_RS04375 0.56 -0.7 997,016 - HER17_RS04375 0.68 -0.5 997,016 - HER17_RS04375 0.68 +0.1 997,039 + HER17_RS04375 0.72 +1.0 997,039 + HER17_RS04375 0.72 -0.3 997,040 - HER17_RS04375 0.72 +0.4 997,044 - HER17_RS04375 0.73 -0.2 997,066 - HER17_RS04375 0.76 +0.6 997,106 - HER17_RS04375 0.82 +0.2 997,107 + HER17_RS04375 0.82 -0.5 997,107 + HER17_RS04375 0.82 -0.7 997,107 + HER17_RS04375 0.82 -0.3 997,107 + HER17_RS04375 0.82 +0.2 997,107 + HER17_RS04375 0.82 +0.4 997,108 - HER17_RS04375 0.82 +0.7 997,108 - HER17_RS04375 0.82 -0.3 997,121 + HER17_RS04375 0.84 -0.0 997,122 - HER17_RS04375 0.85 +1.5 997,127 + HER17_RS04375 0.85 -0.5 997,128 - HER17_RS04375 0.85 +1.7 997,128 - HER17_RS04375 0.85 -0.2 997,200 - +0.2 997,222 + +1.1 997,223 - +0.7 997,242 - +1.3 997,280 + +0.4 997,339 + HER17_RS04380 0.12 -0.3 997,358 + HER17_RS04380 0.14 -0.3 997,358 + HER17_RS04380 0.14 +0.1 997,358 + HER17_RS04380 0.14 +0.2 997,422 - HER17_RS04380 0.20 -0.2 997,444 - HER17_RS04380 0.22 +0.3 997,444 - HER17_RS04380 0.22 +1.0
Or see this region's nucleotide sequence