Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03395 and HER17_RS03400 are separated by 437 nucleotides HER17_RS03400 and HER17_RS03405 are separated by 11 nucleotides HER17_RS03405 and HER17_RS03410 are separated by 85 nucleotides
HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204
_RS03395
HER17_RS03400: HER17_RS03400 - multidrug efflux SMR transporter, at 773,642 to 773,968
_RS03400
HER17_RS03405: HER17_RS03405 - multidrug efflux SMR transporter, at 773,980 to 774,402
_RS03405
HER17_RS03410: HER17_RS03410 - choline TMA-lyase-activating enzyme, at 774,488 to 775,438
_RS03410
Position (kb) 773
774 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.654 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.661 kb on + strand, within HER17_RS03395 at 772.662 kb on - strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.753 kb on - strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.785 kb on - strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.796 kb on - strand, within HER17_RS03395 at 772.808 kb on + strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.830 kb on + strand, within HER17_RS03395 at 772.831 kb on - strand, within HER17_RS03395 at 772.950 kb on + strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.954 kb on + strand, within HER17_RS03395 at 773.113 kb on - strand at 773.127 kb on + strand at 773.147 kb on + strand at 773.186 kb on + strand at 773.196 kb on - strand at 773.222 kb on + strand at 773.247 kb on + strand at 773.248 kb on - strand at 773.323 kb on - strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.340 kb on + strand at 773.340 kb on + strand at 773.340 kb on + strand at 773.341 kb on - strand at 773.341 kb on - strand at 773.341 kb on - strand at 773.389 kb on - strand at 773.415 kb on - strand at 773.540 kb on - strand at 773.558 kb on - strand at 773.577 kb on - strand at 773.602 kb on + strand at 773.641 kb on - strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.647 kb on + strand at 773.647 kb on + strand at 773.648 kb on - strand at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.781 kb on - strand, within HER17_RS03400 at 773.808 kb on + strand, within HER17_RS03400 at 773.885 kb on - strand, within HER17_RS03400 at 773.981 kb on + strand at 773.982 kb on - strand at 774.008 kb on - strand at 774.156 kb on + strand, within HER17_RS03405 at 774.274 kb on - strand, within HER17_RS03405 at 774.334 kb on - strand, within HER17_RS03405 at 774.334 kb on - strand, within HER17_RS03405 at 774.364 kb on + strand at 774.365 kb on - strand at 774.367 kb on + strand at 774.367 kb on + strand at 774.367 kb on + strand at 774.402 kb on + strand at 774.402 kb on + strand at 774.403 kb on - strand at 774.405 kb on + strand at 774.405 kb on + strand at 774.405 kb on + strand at 774.406 kb on - strand at 774.406 kb on - strand at 774.419 kb on + strand at 774.420 kb on - strand at 774.420 kb on - strand at 774.463 kb on - strand at 774.470 kb on - strand at 774.476 kb on - strand at 774.477 kb on + strand at 774.477 kb on + strand at 774.478 kb on - strand at 774.478 kb on - strand at 774.565 kb on - strand at 774.565 kb on - strand at 774.589 kb on - strand, within HER17_RS03410 at 774.623 kb on + strand, within HER17_RS03410 at 774.634 kb on - strand, within HER17_RS03410 at 774.641 kb on + strand, within HER17_RS03410 at 774.641 kb on + strand, within HER17_RS03410 at 774.642 kb on - strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.659 kb on - strand, within HER17_RS03410 at 774.659 kb on - strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.746 kb on - strand, within HER17_RS03410 at 774.799 kb on + strand, within HER17_RS03410 at 774.800 kb on - strand, within HER17_RS03410 at 774.897 kb on + strand, within HER17_RS03410 at 774.937 kb on + strand, within HER17_RS03410 at 774.938 kb on - strand, within HER17_RS03410 at 774.941 kb on - strand, within HER17_RS03410 at 774.941 kb on - strand, within HER17_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 772,654 + HER17_RS03395 0.48 +1.2 772,654 + HER17_RS03395 0.48 +0.1 772,655 - HER17_RS03395 0.48 +0.0 772,655 - HER17_RS03395 0.48 -1.4 772,655 - HER17_RS03395 0.48 +0.5 772,661 + HER17_RS03395 0.49 +0.3 772,662 - HER17_RS03395 0.49 +0.3 772,752 + HER17_RS03395 0.57 -0.3 772,752 + HER17_RS03395 0.57 -0.1 772,753 - HER17_RS03395 0.57 +0.0 772,784 + HER17_RS03395 0.60 -0.1 772,784 + HER17_RS03395 0.60 -0.2 772,785 - HER17_RS03395 0.60 +0.8 772,795 + HER17_RS03395 0.61 -0.2 772,795 + HER17_RS03395 0.61 +0.1 772,795 + HER17_RS03395 0.61 +0.9 772,795 + HER17_RS03395 0.61 +0.2 772,796 - HER17_RS03395 0.61 -0.0 772,808 + HER17_RS03395 0.63 -2.3 772,809 - HER17_RS03395 0.63 +0.8 772,809 - HER17_RS03395 0.63 +0.3 772,830 + HER17_RS03395 0.65 +0.9 772,831 - HER17_RS03395 0.65 -0.1 772,950 + HER17_RS03395 0.76 +0.9 772,951 - HER17_RS03395 0.76 +0.4 772,951 - HER17_RS03395 0.76 +0.3 772,954 + HER17_RS03395 0.76 +0.4 773,113 - +0.6 773,127 + -0.6 773,147 + +0.1 773,186 + +0.2 773,196 - +0.7 773,222 + -1.1 773,247 + -0.2 773,248 - +0.6 773,323 - +1.0 773,327 + +1.0 773,327 + -1.0 773,327 + +1.0 773,327 + +0.2 773,328 - -0.1 773,328 - -0.1 773,328 - -0.3 773,328 - +0.3 773,340 + +0.1 773,340 + -0.1 773,340 + -0.1 773,341 - -1.1 773,341 - -1.6 773,341 - +1.0 773,389 - -0.1 773,415 - +0.7 773,540 - +0.9 773,558 - +2.4 773,577 - -1.4 773,602 + -1.7 773,641 - -0.1 773,643 + -0.5 773,643 + +0.2 773,643 + -0.2 773,643 + +0.3 773,643 + +0.6 773,647 + +0.4 773,647 + -0.2 773,648 - +0.3 773,688 - HER17_RS03400 0.14 +0.2 773,688 - HER17_RS03400 0.14 -0.4 773,688 - HER17_RS03400 0.14 -0.3 773,781 - HER17_RS03400 0.43 -0.0 773,808 + HER17_RS03400 0.51 +2.2 773,885 - HER17_RS03400 0.74 +0.7 773,981 + -0.7 773,982 - -0.6 774,008 - -2.2 774,156 + HER17_RS03405 0.42 +0.2 774,274 - HER17_RS03405 0.70 -1.3 774,334 - HER17_RS03405 0.84 -0.1 774,334 - HER17_RS03405 0.84 -0.3 774,364 + +0.3 774,365 - +0.0 774,367 + +0.5 774,367 + -0.1 774,367 + -0.5 774,402 + -0.1 774,402 + +0.8 774,403 - +0.1 774,405 + -0.9 774,405 + -0.3 774,405 + -0.5 774,406 - +0.2 774,406 - -1.3 774,419 + +0.1 774,420 - -0.3 774,420 - -1.4 774,463 - -0.1 774,470 - -0.6 774,476 - +0.2 774,477 + -0.1 774,477 + +0.5 774,478 - -1.1 774,478 - +0.4 774,565 - -0.6 774,565 - +0.3 774,589 - HER17_RS03410 0.11 +1.4 774,623 + HER17_RS03410 0.14 -0.4 774,634 - HER17_RS03410 0.15 +1.2 774,641 + HER17_RS03410 0.16 -0.4 774,641 + HER17_RS03410 0.16 +0.5 774,642 - HER17_RS03410 0.16 -0.4 774,656 + HER17_RS03410 0.18 +0.5 774,656 + HER17_RS03410 0.18 -0.8 774,656 + HER17_RS03410 0.18 -0.1 774,657 - HER17_RS03410 0.18 -0.3 774,657 - HER17_RS03410 0.18 +0.8 774,657 - HER17_RS03410 0.18 +0.4 774,658 + HER17_RS03410 0.18 -0.1 774,658 + HER17_RS03410 0.18 +0.3 774,658 + HER17_RS03410 0.18 -0.5 774,659 - HER17_RS03410 0.18 -0.1 774,659 - HER17_RS03410 0.18 -0.1 774,687 + HER17_RS03410 0.21 +0.1 774,687 + HER17_RS03410 0.21 -1.4 774,687 + HER17_RS03410 0.21 +0.4 774,746 - HER17_RS03410 0.27 -0.7 774,799 + HER17_RS03410 0.33 +0.2 774,800 - HER17_RS03410 0.33 +1.1 774,897 + HER17_RS03410 0.43 +0.6 774,937 + HER17_RS03410 0.47 +0.7 774,938 - HER17_RS03410 0.47 +0.3 774,941 - HER17_RS03410 0.48 -0.1 774,941 - HER17_RS03410 0.48 +0.8
Or see this region's nucleotide sequence