Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02335 and HER17_RS02340 are separated by 509 nucleotides HER17_RS02340 and HER17_RS02345 are separated by 43 nucleotides HER17_RS02345 and HER17_RS02350 are separated by 60 nucleotides
HER17_RS02335: HER17_RS02335 - lysine-sensitive aspartokinase 3, at 524,581 to 525,957
_RS02335
HER17_RS02340: HER17_RS02340 - glucose-6-phosphate isomerase, at 526,467 to 528,116
_RS02340
HER17_RS02345: HER17_RS02345 - DUF4156 domain-containing protein, at 528,160 to 528,504
_RS02345
HER17_RS02350: HER17_RS02350 - EF-P beta-lysylation protein EpmB, at 528,565 to 529,617
_RS02350
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 525.564 kb on + strand, within HER17_RS02335 at 525.716 kb on + strand, within HER17_RS02335 at 525.941 kb on - strand at 525.996 kb on + strand at 526.011 kb on + strand at 526.011 kb on + strand at 526.067 kb on + strand at 526.067 kb on + strand at 526.072 kb on + strand at 526.072 kb on + strand at 526.073 kb on - strand at 526.073 kb on - strand at 526.073 kb on - strand at 526.114 kb on + strand at 526.169 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.238 kb on - strand at 526.238 kb on - strand at 526.238 kb on - strand at 526.283 kb on + strand at 526.291 kb on + strand at 526.297 kb on + strand at 526.306 kb on - strand at 526.306 kb on - strand at 526.381 kb on - strand at 526.417 kb on + strand at 526.417 kb on + strand at 526.418 kb on - strand at 526.510 kb on + strand at 526.511 kb on - strand at 526.511 kb on - strand at 526.511 kb on - strand at 526.511 kb on - strand at 526.569 kb on - strand at 526.890 kb on + strand, within HER17_RS02340 at 526.890 kb on + strand, within HER17_RS02340 at 526.908 kb on - strand, within HER17_RS02340 at 526.908 kb on - strand, within HER17_RS02340 at 526.908 kb on - strand, within HER17_RS02340 at 526.980 kb on + strand, within HER17_RS02340 at 526.982 kb on + strand, within HER17_RS02340 at 526.982 kb on + strand, within HER17_RS02340 at 526.997 kb on + strand, within HER17_RS02340 at 527.331 kb on - strand, within HER17_RS02340 at 527.436 kb on + strand, within HER17_RS02340 at 527.487 kb on + strand, within HER17_RS02340 at 527.487 kb on + strand, within HER17_RS02340 at 527.488 kb on - strand, within HER17_RS02340 at 527.488 kb on - strand, within HER17_RS02340 at 527.526 kb on - strand, within HER17_RS02340 at 527.526 kb on - strand, within HER17_RS02340 at 527.526 kb on - strand, within HER17_RS02340 at 527.574 kb on + strand, within HER17_RS02340 at 527.575 kb on - strand, within HER17_RS02340 at 527.631 kb on + strand, within HER17_RS02340 at 527.632 kb on - strand, within HER17_RS02340 at 527.768 kb on + strand, within HER17_RS02340 at 527.768 kb on + strand, within HER17_RS02340 at 527.769 kb on - strand, within HER17_RS02340 at 527.852 kb on - strand, within HER17_RS02340 at 527.879 kb on + strand, within HER17_RS02340 at 527.880 kb on - strand, within HER17_RS02340 at 527.931 kb on + strand, within HER17_RS02340 at 527.931 kb on + strand, within HER17_RS02340 at 527.932 kb on - strand, within HER17_RS02340 at 528.002 kb on - strand at 528.050 kb on + strand at 528.051 kb on - strand at 528.074 kb on + strand at 528.171 kb on + strand at 528.172 kb on - strand at 528.172 kb on - strand at 528.318 kb on + strand, within HER17_RS02345 at 528.319 kb on - strand, within HER17_RS02345 at 528.354 kb on + strand, within HER17_RS02345 at 528.355 kb on - strand, within HER17_RS02345 at 528.381 kb on + strand, within HER17_RS02345 at 528.384 kb on + strand, within HER17_RS02345 at 528.385 kb on - strand, within HER17_RS02345 at 528.408 kb on + strand, within HER17_RS02345 at 528.409 kb on - strand, within HER17_RS02345 at 528.415 kb on + strand, within HER17_RS02345 at 528.415 kb on + strand, within HER17_RS02345 at 528.415 kb on + strand, within HER17_RS02345 at 528.416 kb on - strand, within HER17_RS02345 at 528.416 kb on - strand, within HER17_RS02345 at 528.491 kb on - strand at 528.502 kb on + strand at 528.507 kb on + strand at 528.559 kb on + strand at 528.560 kb on - strand at 528.560 kb on - strand at 528.560 kb on - strand at 528.574 kb on + strand at 528.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 525,564 + HER17_RS02335 0.71 +0.1 525,716 + HER17_RS02335 0.82 -0.6 525,941 - -0.2 525,996 + -0.6 526,011 + +0.1 526,011 + +0.7 526,067 + -0.1 526,067 + +0.2 526,072 + -1.3 526,072 + +0.5 526,073 - +0.5 526,073 - -0.8 526,073 - -0.7 526,114 + -0.2 526,169 + +0.5 526,237 + -1.1 526,237 + -0.6 526,237 + +0.3 526,237 + +0.1 526,237 + +0.1 526,238 - +0.7 526,238 - +0.6 526,238 - -0.1 526,283 + +0.4 526,291 + -0.1 526,297 + +0.8 526,306 - -0.3 526,306 - -0.2 526,381 - +0.7 526,417 + +0.0 526,417 + -0.1 526,418 - -1.7 526,510 + -0.3 526,511 - -0.9 526,511 - +0.2 526,511 - -1.2 526,511 - +0.2 526,569 - -0.9 526,890 + HER17_RS02340 0.26 -1.4 526,890 + HER17_RS02340 0.26 -1.8 526,908 - HER17_RS02340 0.27 -1.4 526,908 - HER17_RS02340 0.27 -0.1 526,908 - HER17_RS02340 0.27 +0.2 526,980 + HER17_RS02340 0.31 -0.8 526,982 + HER17_RS02340 0.31 -0.1 526,982 + HER17_RS02340 0.31 +0.1 526,997 + HER17_RS02340 0.32 -1.0 527,331 - HER17_RS02340 0.52 +0.1 527,436 + HER17_RS02340 0.59 -2.3 527,487 + HER17_RS02340 0.62 +0.3 527,487 + HER17_RS02340 0.62 +0.5 527,488 - HER17_RS02340 0.62 -1.2 527,488 - HER17_RS02340 0.62 +0.3 527,526 - HER17_RS02340 0.64 -1.4 527,526 - HER17_RS02340 0.64 -1.3 527,526 - HER17_RS02340 0.64 -0.5 527,574 + HER17_RS02340 0.67 +0.1 527,575 - HER17_RS02340 0.67 -1.2 527,631 + HER17_RS02340 0.71 -1.0 527,632 - HER17_RS02340 0.71 +0.7 527,768 + HER17_RS02340 0.79 -0.2 527,768 + HER17_RS02340 0.79 -0.8 527,769 - HER17_RS02340 0.79 -0.5 527,852 - HER17_RS02340 0.84 -1.8 527,879 + HER17_RS02340 0.86 -1.2 527,880 - HER17_RS02340 0.86 -1.9 527,931 + HER17_RS02340 0.89 -1.4 527,931 + HER17_RS02340 0.89 -0.5 527,932 - HER17_RS02340 0.89 +0.3 528,002 - -3.1 528,050 + -1.2 528,051 - -1.1 528,074 + -2.0 528,171 + +0.1 528,172 - -0.0 528,172 - +1.1 528,318 + HER17_RS02345 0.46 -0.1 528,319 - HER17_RS02345 0.46 -0.7 528,354 + HER17_RS02345 0.56 +0.2 528,355 - HER17_RS02345 0.57 -0.6 528,381 + HER17_RS02345 0.64 +0.5 528,384 + HER17_RS02345 0.65 +0.3 528,385 - HER17_RS02345 0.65 -0.8 528,408 + HER17_RS02345 0.72 -1.6 528,409 - HER17_RS02345 0.72 +0.1 528,415 + HER17_RS02345 0.74 +0.3 528,415 + HER17_RS02345 0.74 +0.3 528,415 + HER17_RS02345 0.74 +0.3 528,416 - HER17_RS02345 0.74 -2.3 528,416 - HER17_RS02345 0.74 -0.1 528,491 - +0.6 528,502 + +1.6 528,507 + -0.6 528,559 + +0.0 528,560 - -1.3 528,560 - -0.1 528,560 - +0.0 528,574 + +0.2 528,608 - +0.9
Or see this region's nucleotide sequence