Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00820 and HER17_RS00825 are separated by 255 nucleotides HER17_RS00825 and HER17_RS00830 are separated by 53 nucleotides
HER17_RS00820: HER17_RS00820 - class II fructose-bisphosphatase, at 191,301 to 192,311
_RS00820
HER17_RS00825: HER17_RS00825 - glycerol kinase GlpK, at 192,567 to 194,078
_RS00825
HER17_RS00830: HER17_RS00830 - aquaporin family protein, at 194,132 to 194,971
_RS00830
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.695 kb on + strand, within HER17_RS00820 at 191.829 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 192.072 kb on + strand, within HER17_RS00820 at 192.073 kb on - strand, within HER17_RS00820 at 192.119 kb on + strand, within HER17_RS00820 at 192.120 kb on - strand, within HER17_RS00820 at 192.167 kb on + strand, within HER17_RS00820 at 192.201 kb on + strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.248 kb on + strand at 192.249 kb on - strand at 192.250 kb on + strand at 192.297 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.312 kb on - strand at 192.312 kb on - strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.323 kb on + strand at 192.323 kb on + strand at 192.324 kb on - strand at 192.324 kb on - strand at 192.357 kb on - strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.435 kb on - strand at 192.446 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.551 kb on + strand at 192.551 kb on + strand at 192.552 kb on - strand at 192.552 kb on - strand at 192.900 kb on + strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 193.174 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.279 kb on + strand, within HER17_RS00825 at 193.358 kb on + strand, within HER17_RS00825 at 193.359 kb on - strand, within HER17_RS00825 at 193.365 kb on - strand, within HER17_RS00825 at 193.402 kb on + strand, within HER17_RS00825 at 193.583 kb on + strand, within HER17_RS00825 at 193.669 kb on + strand, within HER17_RS00825 at 193.670 kb on - strand, within HER17_RS00825 at 193.670 kb on - strand, within HER17_RS00825 at 193.705 kb on + strand, within HER17_RS00825 at 193.706 kb on - strand, within HER17_RS00825 at 193.706 kb on - strand, within HER17_RS00825 at 193.778 kb on + strand, within HER17_RS00825 at 193.778 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.781 kb on - strand, within HER17_RS00825 at 193.810 kb on - strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.839 kb on - strand, within HER17_RS00825 at 193.957 kb on + strand at 194.013 kb on + strand at 194.059 kb on + strand at 194.060 kb on - strand at 194.078 kb on + strand at 194.079 kb on - strand at 194.110 kb on + strand at 194.111 kb on - strand at 194.155 kb on + strand at 194.156 kb on - strand at 194.271 kb on + strand, within HER17_RS00830 at 194.271 kb on + strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.456 kb on - strand, within HER17_RS00830 at 194.531 kb on - strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.653 kb on - strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.945 kb on + strand at 194.946 kb on - strand at 194.972 kb on - strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 195.004 kb on + strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.041 kb on - strand at 195.050 kb on + strand at 195.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 191,695 + HER17_RS00820 0.39 +0.3 191,829 + HER17_RS00820 0.52 +0.9 191,831 + HER17_RS00820 0.52 +0.4 191,831 + HER17_RS00820 0.52 -0.1 191,831 + HER17_RS00820 0.52 -1.1 191,831 + HER17_RS00820 0.52 -0.4 191,832 - HER17_RS00820 0.53 -1.7 191,832 - HER17_RS00820 0.53 -0.6 191,832 - HER17_RS00820 0.53 -0.1 191,832 - HER17_RS00820 0.53 +0.0 191,859 - HER17_RS00820 0.55 +0.6 191,859 - HER17_RS00820 0.55 +0.2 191,879 + HER17_RS00820 0.57 +0.5 191,879 + HER17_RS00820 0.57 -1.7 191,879 + HER17_RS00820 0.57 +0.1 191,879 + HER17_RS00820 0.57 +0.0 191,879 + HER17_RS00820 0.57 +0.6 191,880 - HER17_RS00820 0.57 -0.4 191,880 - HER17_RS00820 0.57 +0.1 191,880 - HER17_RS00820 0.57 -0.0 191,880 - HER17_RS00820 0.57 -1.0 191,880 - HER17_RS00820 0.57 +0.0 191,883 + HER17_RS00820 0.58 -0.3 191,883 + HER17_RS00820 0.58 -0.4 191,883 + HER17_RS00820 0.58 -0.3 191,883 + HER17_RS00820 0.58 +0.4 191,884 - HER17_RS00820 0.58 -0.3 191,884 - HER17_RS00820 0.58 +0.3 191,884 - HER17_RS00820 0.58 -0.1 191,956 + HER17_RS00820 0.65 -0.5 191,956 + HER17_RS00820 0.65 +2.5 191,956 + HER17_RS00820 0.65 +0.5 191,956 + HER17_RS00820 0.65 +0.6 191,957 - HER17_RS00820 0.65 +0.3 191,957 - HER17_RS00820 0.65 -0.1 191,957 - HER17_RS00820 0.65 +0.5 191,957 - HER17_RS00820 0.65 +0.2 191,957 - HER17_RS00820 0.65 +0.1 191,957 - HER17_RS00820 0.65 -0.2 191,957 - HER17_RS00820 0.65 +0.0 191,957 - HER17_RS00820 0.65 -0.1 191,957 - HER17_RS00820 0.65 +0.5 192,072 + HER17_RS00820 0.76 -0.5 192,073 - HER17_RS00820 0.76 -0.1 192,119 + HER17_RS00820 0.81 +1.7 192,120 - HER17_RS00820 0.81 +0.2 192,167 + HER17_RS00820 0.86 +0.0 192,201 + HER17_RS00820 0.89 +0.2 192,202 - HER17_RS00820 0.89 +0.4 192,202 - HER17_RS00820 0.89 -0.7 192,248 + -1.6 192,249 - -0.5 192,250 + +0.2 192,297 + +0.5 192,311 + -0.1 192,311 + -0.0 192,311 + +0.3 192,311 + -0.1 192,312 - -0.4 192,312 - +0.1 192,315 + -0.6 192,315 + +0.1 192,315 + +1.0 192,315 + +0.1 192,316 - -1.1 192,316 - -0.3 192,316 - +0.3 192,316 - +0.2 192,323 + +0.2 192,323 + +0.1 192,324 - +0.6 192,324 - -2.9 192,357 - -0.3 192,364 + +0.6 192,364 + +0.1 192,364 + +0.0 192,364 + +0.8 192,364 + +0.3 192,364 + +0.3 192,364 + -0.2 192,364 + -0.4 192,365 - +0.9 192,365 - +0.4 192,365 - -0.3 192,365 - -0.6 192,365 - -0.5 192,435 - -0.4 192,446 + -0.5 192,460 + +1.5 192,460 + +0.0 192,460 + -2.3 192,460 + -1.5 192,460 + +0.1 192,551 + +0.6 192,551 + -1.7 192,552 - +1.5 192,552 - +0.0 192,900 + HER17_RS00825 0.22 +1.0 192,901 - HER17_RS00825 0.22 +0.2 192,901 - HER17_RS00825 0.22 -0.1 192,901 - HER17_RS00825 0.22 -0.5 192,901 - HER17_RS00825 0.22 -1.1 193,174 + HER17_RS00825 0.40 +0.9 193,178 + HER17_RS00825 0.40 +0.5 193,178 + HER17_RS00825 0.40 -0.5 193,178 + HER17_RS00825 0.40 -0.4 193,178 + HER17_RS00825 0.40 +0.5 193,279 + HER17_RS00825 0.47 +0.3 193,358 + HER17_RS00825 0.52 +0.1 193,359 - HER17_RS00825 0.52 -1.4 193,365 - HER17_RS00825 0.53 +0.2 193,402 + HER17_RS00825 0.55 +0.5 193,583 + HER17_RS00825 0.67 -1.0 193,669 + HER17_RS00825 0.73 -0.6 193,670 - HER17_RS00825 0.73 -0.1 193,670 - HER17_RS00825 0.73 +0.2 193,705 + HER17_RS00825 0.75 -0.1 193,706 - HER17_RS00825 0.75 +0.2 193,706 - HER17_RS00825 0.75 -0.8 193,778 + HER17_RS00825 0.80 -0.1 193,778 + HER17_RS00825 0.80 -2.0 193,780 + HER17_RS00825 0.80 -0.7 193,780 + HER17_RS00825 0.80 +0.5 193,780 + HER17_RS00825 0.80 -1.7 193,780 + HER17_RS00825 0.80 -0.1 193,781 - HER17_RS00825 0.80 -0.4 193,810 - HER17_RS00825 0.82 -1.7 193,812 + HER17_RS00825 0.82 +0.1 193,812 + HER17_RS00825 0.82 +0.0 193,812 + HER17_RS00825 0.82 -0.2 193,813 - HER17_RS00825 0.82 -0.1 193,813 - HER17_RS00825 0.82 -1.5 193,813 - HER17_RS00825 0.82 +0.8 193,813 - HER17_RS00825 0.82 +0.0 193,813 - HER17_RS00825 0.82 +0.6 193,813 - HER17_RS00825 0.82 +0.1 193,839 - HER17_RS00825 0.84 -0.4 193,957 + +0.6 194,013 + +0.1 194,059 + -0.3 194,060 - -1.8 194,078 + -0.3 194,079 - -1.0 194,110 + -0.1 194,111 - +1.3 194,155 + +1.0 194,156 - +0.0 194,271 + HER17_RS00830 0.17 -0.1 194,271 + HER17_RS00830 0.17 +1.5 194,272 - HER17_RS00830 0.17 +0.4 194,272 - HER17_RS00830 0.17 +0.0 194,272 - HER17_RS00830 0.17 -0.2 194,456 - HER17_RS00830 0.39 -0.1 194,531 - HER17_RS00830 0.47 +1.6 194,605 + HER17_RS00830 0.56 +1.0 194,605 + HER17_RS00830 0.56 +0.8 194,605 + HER17_RS00830 0.56 -0.6 194,605 + HER17_RS00830 0.56 +0.6 194,606 - HER17_RS00830 0.56 +1.3 194,606 - HER17_RS00830 0.56 -1.9 194,606 - HER17_RS00830 0.56 +0.1 194,653 - HER17_RS00830 0.62 -0.3 194,700 + HER17_RS00830 0.68 +1.0 194,700 + HER17_RS00830 0.68 +0.6 194,701 - HER17_RS00830 0.68 -0.4 194,701 - HER17_RS00830 0.68 -1.0 194,701 - HER17_RS00830 0.68 -0.2 194,749 + HER17_RS00830 0.73 -0.5 194,749 + HER17_RS00830 0.73 +0.5 194,749 + HER17_RS00830 0.73 -0.2 194,797 - HER17_RS00830 0.79 +0.8 194,797 - HER17_RS00830 0.79 -1.2 194,834 + HER17_RS00830 0.84 +0.6 194,834 + HER17_RS00830 0.84 -0.0 194,834 + HER17_RS00830 0.84 +0.0 194,834 + HER17_RS00830 0.84 +0.4 194,834 + HER17_RS00830 0.84 -0.8 194,834 + HER17_RS00830 0.84 -0.5 194,835 - HER17_RS00830 0.84 -0.9 194,835 - HER17_RS00830 0.84 +0.5 194,835 - HER17_RS00830 0.84 +1.8 194,945 + +1.8 194,946 - +0.4 194,972 - -0.1 194,994 + +1.1 194,994 + +0.8 194,994 + +0.5 194,994 + +1.5 194,994 + +1.5 194,995 - -0.1 194,995 - +0.0 194,995 - -0.7 194,995 - -0.1 195,004 + -0.1 195,005 - +1.8 195,005 - +0.8 195,005 - +0.1 195,005 - -0.1 195,010 + +0.4 195,010 + -0.4 195,010 + +0.6 195,010 + +0.3 195,041 - +0.3 195,050 + +0.2 195,050 + -0.3
Or see this region's nucleotide sequence