Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00335

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00330 and HER17_RS00335 are separated by 329 nucleotidesHER17_RS00335 and HER17_RS00340 overlap by 11 nucleotides HER17_RS00330: HER17_RS00330 - gamma-glutamyltransferase, at 73,866 to 75,644 _RS00330 HER17_RS00335: HER17_RS00335 - thiamine pyrophosphate-dependent enzyme, at 75,974 to 77,686 _RS00335 HER17_RS00340: HER17_RS00340 - hypothetical protein, at 77,676 to 78,653 _RS00340 Position (kb) 75 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 75.012 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.056 kb on + strand, within HER17_RS00330at 75.086 kb on - strand, within HER17_RS00330at 75.185 kb on + strand, within HER17_RS00330at 75.186 kb on - strand, within HER17_RS00330at 75.338 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.588 kb on + strandat 75.697 kb on + strandat 75.698 kb on - strandat 75.753 kb on - strandat 75.753 kb on - strandat 75.771 kb on + strandat 75.808 kb on - strandat 75.818 kb on + strandat 75.843 kb on + strandat 75.843 kb on + strandat 75.844 kb on - strandat 75.861 kb on + strandat 75.861 kb on + strandat 75.899 kb on + strandat 75.952 kb on + strandat 75.963 kb on - strandat 76.045 kb on - strandat 76.058 kb on - strandat 76.063 kb on - strandat 76.081 kb on - strandat 76.344 kb on + strand, within HER17_RS00335at 76.364 kb on + strand, within HER17_RS00335at 76.368 kb on + strand, within HER17_RS00335at 76.369 kb on - strand, within HER17_RS00335at 76.369 kb on - strand, within HER17_RS00335at 76.407 kb on + strand, within HER17_RS00335at 76.434 kb on + strand, within HER17_RS00335at 76.454 kb on + strand, within HER17_RS00335at 76.458 kb on + strand, within HER17_RS00335at 76.543 kb on + strand, within HER17_RS00335at 76.786 kb on - strand, within HER17_RS00335at 76.819 kb on - strand, within HER17_RS00335at 76.819 kb on - strand, within HER17_RS00335at 76.841 kb on - strand, within HER17_RS00335at 77.066 kb on + strand, within HER17_RS00335at 77.067 kb on - strand, within HER17_RS00335at 77.093 kb on - strand, within HER17_RS00335at 77.122 kb on + strand, within HER17_RS00335at 77.123 kb on - strand, within HER17_RS00335at 77.128 kb on + strand, within HER17_RS00335at 77.166 kb on - strand, within HER17_RS00335at 77.273 kb on + strand, within HER17_RS00335at 77.273 kb on + strand, within HER17_RS00335at 77.274 kb on - strand, within HER17_RS00335at 77.329 kb on + strand, within HER17_RS00335at 77.330 kb on - strand, within HER17_RS00335at 77.356 kb on + strand, within HER17_RS00335at 77.357 kb on - strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.366 kb on - strand, within HER17_RS00335at 77.366 kb on - strand, within HER17_RS00335at 77.366 kb on - strand, within HER17_RS00335at 77.368 kb on + strand, within HER17_RS00335at 77.368 kb on + strand, within HER17_RS00335at 77.369 kb on - strand, within HER17_RS00335at 77.369 kb on - strand, within HER17_RS00335at 77.369 kb on - strand, within HER17_RS00335at 77.419 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.424 kb on - strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.628 kb on + strandat 77.687 kb on + strandat 77.687 kb on + strandat 77.687 kb on + strandat 77.688 kb on - strandat 77.688 kb on - strandat 77.688 kb on - strandat 77.732 kb on - strandat 77.758 kb on + strandat 77.758 kb on + strandat 77.764 kb on + strandat 77.852 kb on + strand, within HER17_RS00340at 77.879 kb on - strand, within HER17_RS00340at 77.879 kb on - strand, within HER17_RS00340at 77.937 kb on - strand, within HER17_RS00340at 77.941 kb on + strand, within HER17_RS00340at 77.941 kb on + strand, within HER17_RS00340at 77.941 kb on + strand, within HER17_RS00340at 78.075 kb on + strand, within HER17_RS00340at 78.075 kb on + strand, within HER17_RS00340at 78.075 kb on + strand, within HER17_RS00340at 78.076 kb on - strand, within HER17_RS00340at 78.102 kb on + strand, within HER17_RS00340at 78.223 kb on - strand, within HER17_RS00340at 78.224 kb on + strand, within HER17_RS00340at 78.262 kb on - strand, within HER17_RS00340at 78.296 kb on - strand, within HER17_RS00340at 78.299 kb on + strand, within HER17_RS00340at 78.323 kb on + strand, within HER17_RS00340at 78.341 kb on - strand, within HER17_RS00340at 78.341 kb on - strand, within HER17_RS00340at 78.341 kb on - strand, within HER17_RS00340at 78.386 kb on + strand, within HER17_RS00340at 78.390 kb on + strand, within HER17_RS00340at 78.390 kb on + strand, within HER17_RS00340at 78.474 kb on + strand, within HER17_RS00340at 78.475 kb on - strand, within HER17_RS00340at 78.652 kb on - strandat 78.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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75,012 + HER17_RS00330 0.64 -0.7
75,054 + HER17_RS00330 0.67 -0.0
75,054 + HER17_RS00330 0.67 -0.2
75,054 + HER17_RS00330 0.67 -0.2
75,054 + HER17_RS00330 0.67 +0.8
75,055 - HER17_RS00330 0.67 +0.6
75,055 - HER17_RS00330 0.67 -1.1
75,055 - HER17_RS00330 0.67 +0.0
75,055 - HER17_RS00330 0.67 -0.7
75,055 - HER17_RS00330 0.67 -0.1
75,056 + HER17_RS00330 0.67 +0.3
75,086 - HER17_RS00330 0.69 -2.0
75,185 + HER17_RS00330 0.74 +0.1
75,186 - HER17_RS00330 0.74 +0.3
75,338 + HER17_RS00330 0.83 -0.6
75,402 + HER17_RS00330 0.86 -1.3
75,402 + HER17_RS00330 0.86 -0.2
75,402 + HER17_RS00330 0.86 +0.1
75,402 + HER17_RS00330 0.86 +0.4
75,402 + HER17_RS00330 0.86 +0.5
75,403 - HER17_RS00330 0.86 -1.5
75,403 - HER17_RS00330 0.86 -0.9
75,403 - HER17_RS00330 0.86 +0.6
75,403 - HER17_RS00330 0.86 +1.0
75,403 - HER17_RS00330 0.86 -0.7
75,588 + -0.5
75,697 + -0.3
75,698 - -0.1
75,753 - -0.0
75,753 - -1.3
75,771 + -0.1
75,808 - +0.4
75,818 + +1.2
75,843 + +0.1
75,843 + +0.7
75,844 - +0.8
75,861 + +0.1
75,861 + +0.0
75,899 + -0.5
75,952 + +1.8
75,963 - +1.9
76,045 - +0.9
76,058 - -0.2
76,063 - +0.1
76,081 - -0.6
76,344 + HER17_RS00335 0.22 -0.1
76,364 + HER17_RS00335 0.23 -0.2
76,368 + HER17_RS00335 0.23 +0.1
76,369 - HER17_RS00335 0.23 +0.3
76,369 - HER17_RS00335 0.23 +0.0
76,407 + HER17_RS00335 0.25 +0.9
76,434 + HER17_RS00335 0.27 +0.7
76,454 + HER17_RS00335 0.28 +0.0
76,458 + HER17_RS00335 0.28 +1.4
76,543 + HER17_RS00335 0.33 +0.5
76,786 - HER17_RS00335 0.47 +0.2
76,819 - HER17_RS00335 0.49 +0.7
76,819 - HER17_RS00335 0.49 +0.5
76,841 - HER17_RS00335 0.51 -0.5
77,066 + HER17_RS00335 0.64 -0.1
77,067 - HER17_RS00335 0.64 -0.4
77,093 - HER17_RS00335 0.65 -0.3
77,122 + HER17_RS00335 0.67 -0.3
77,123 - HER17_RS00335 0.67 +0.5
77,128 + HER17_RS00335 0.67 +0.6
77,166 - HER17_RS00335 0.70 +0.0
77,273 + HER17_RS00335 0.76 -0.2
77,273 + HER17_RS00335 0.76 -0.4
77,274 - HER17_RS00335 0.76 -0.3
77,329 + HER17_RS00335 0.79 +0.2
77,330 - HER17_RS00335 0.79 +0.3
77,356 + HER17_RS00335 0.81 +0.0
77,357 - HER17_RS00335 0.81 +0.1
77,365 + HER17_RS00335 0.81 +0.3
77,365 + HER17_RS00335 0.81 +0.2
77,365 + HER17_RS00335 0.81 -0.1
77,365 + HER17_RS00335 0.81 +0.7
77,365 + HER17_RS00335 0.81 -0.3
77,366 - HER17_RS00335 0.81 +0.7
77,366 - HER17_RS00335 0.81 +0.3
77,366 - HER17_RS00335 0.81 -1.1
77,368 + HER17_RS00335 0.81 +0.5
77,368 + HER17_RS00335 0.81 +0.3
77,369 - HER17_RS00335 0.81 -1.0
77,369 - HER17_RS00335 0.81 -0.3
77,369 - HER17_RS00335 0.81 +0.4
77,419 + HER17_RS00335 0.84 -0.4
77,423 + HER17_RS00335 0.85 +0.6
77,423 + HER17_RS00335 0.85 +0.4
77,423 + HER17_RS00335 0.85 +0.8
77,423 + HER17_RS00335 0.85 -0.5
77,423 + HER17_RS00335 0.85 +0.2
77,424 - HER17_RS00335 0.85 -1.5
77,428 + HER17_RS00335 0.85 -0.3
77,428 + HER17_RS00335 0.85 +0.0
77,428 + HER17_RS00335 0.85 +2.3
77,428 + HER17_RS00335 0.85 +0.5
77,428 + HER17_RS00335 0.85 +0.0
77,428 + HER17_RS00335 0.85 +0.1
77,429 - HER17_RS00335 0.85 +0.5
77,429 - HER17_RS00335 0.85 -0.6
77,429 - HER17_RS00335 0.85 -0.8
77,429 - HER17_RS00335 0.85 -0.0
77,429 - HER17_RS00335 0.85 -0.1
77,429 - HER17_RS00335 0.85 -0.4
77,429 - HER17_RS00335 0.85 -0.1
77,628 + +0.7
77,687 + +0.5
77,687 + -0.1
77,687 + +0.3
77,688 - -1.7
77,688 - -0.1
77,688 - +0.6
77,732 - -0.0
77,758 + +0.4
77,758 + +0.1
77,764 + +0.6
77,852 + HER17_RS00340 0.18 -1.0
77,879 - HER17_RS00340 0.21 -0.5
77,879 - HER17_RS00340 0.21 +0.5
77,937 - HER17_RS00340 0.27 -2.0
77,941 + HER17_RS00340 0.27 -0.1
77,941 + HER17_RS00340 0.27 -0.3
77,941 + HER17_RS00340 0.27 -2.4
78,075 + HER17_RS00340 0.41 +0.3
78,075 + HER17_RS00340 0.41 +0.0
78,075 + HER17_RS00340 0.41 +1.1
78,076 - HER17_RS00340 0.41 +0.7
78,102 + HER17_RS00340 0.44 +1.0
78,223 - HER17_RS00340 0.56 -0.4
78,224 + HER17_RS00340 0.56 -0.0
78,262 - HER17_RS00340 0.60 +1.2
78,296 - HER17_RS00340 0.63 -0.1
78,299 + HER17_RS00340 0.64 +0.6
78,323 + HER17_RS00340 0.66 +1.5
78,341 - HER17_RS00340 0.68 +0.2
78,341 - HER17_RS00340 0.68 -0.7
78,341 - HER17_RS00340 0.68 +0.4
78,386 + HER17_RS00340 0.73 +0.7
78,390 + HER17_RS00340 0.73 -1.0
78,390 + HER17_RS00340 0.73 -0.1
78,474 + HER17_RS00340 0.82 -0.9
78,475 - HER17_RS00340 0.82 -0.5
78,652 - +0.4
78,654 + +0.2

Or see this region's nucleotide sequence