Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21925

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,615,349	-				+0.2
1,615,366	+				-0.2
1,615,388	-				+0.1
1,615,391	+				-0.7
1,615,617	-				-1.0
1,615,636	-				-1.2
1,615,679	+				-1.3
1,615,684	-				+0.2
1,615,694	+				-0.1
1,615,695	-				-0.0
1,615,711	+				+0.1
1,615,847	-		HER17_RS07290	0.20	-0.7
1,615,847	-		HER17_RS07290	0.20	+1.1
1,615,860	-		HER17_RS07290	0.22	+0.6
1,615,860	-		HER17_RS07290	0.22	+2.0
1,615,860	-		HER17_RS07290	0.22	-0.3
1,615,860	-		HER17_RS07290	0.22	-1.1
1,615,881	+		HER17_RS07290	0.25	-0.5
1,615,932	+		HER17_RS07290	0.33	-0.4
1,615,932	+		HER17_RS07290	0.33	+0.3
1,615,932	+		HER17_RS07290	0.33	+0.0
1,616,016	+		HER17_RS07290	0.47	+0.4
1,616,017	-		HER17_RS07290	0.47	+1.3
1,616,076	-		HER17_RS07290	0.57	+2.3
1,616,118	+		HER17_RS07290	0.63	-0.6
1,616,177	+		HER17_RS07290	0.73	-0.0
1,616,208	+		HER17_RS07290	0.78	-1.5
1,616,213	+		HER17_RS07290	0.79	-0.8
1,616,213	+		HER17_RS07290	0.79	-0.3
1,616,213	+		HER17_RS07290	0.79	+0.3
1,616,213	+		HER17_RS07290	0.79	-0.2
1,616,214	-		HER17_RS07290	0.79	-1.0
1,616,214	-		HER17_RS07290	0.79	-0.6
1,616,214	-		HER17_RS07290	0.79	+0.3
1,616,214	-		HER17_RS07290	0.79	+0.3
1,616,219	+		HER17_RS07290	0.80	-0.2
1,616,219	+		HER17_RS07290	0.80	+0.5
1,616,219	+		HER17_RS07290	0.80	+1.7
1,616,220	-		HER17_RS07290	0.80	+0.4
1,616,220	-		HER17_RS07290	0.80	+0.1
1,616,220	-		HER17_RS07290	0.80	-0.4
1,616,220	-		HER17_RS07290	0.80	+0.8
1,616,235	-		HER17_RS07290	0.82	+0.1
1,616,244	+		HER17_RS07290	0.84	-1.9
1,616,244	+		HER17_RS07290	0.84	+0.7
1,616,262	-		HER17_RS07290	0.87	+1.0
1,616,319	+				-0.6
1,616,333	+				+0.1
1,616,334	-				-1.0
1,616,334	-				-0.3
1,616,334	-				+0.4
1,616,334	-				-0.9
1,616,345	-				+0.3
1,616,345	-				+0.4
1,616,345	-				-0.5
1,616,362	+				-1.6
1,616,362	+				-0.2
1,616,362	+				+0.7
1,616,363	-				+0.1
1,616,367	-				+0.3
1,616,409	+				+0.7
1,616,429	+				-0.3
1,616,429	+				-0.4
1,616,430	-				-0.9
1,616,453	+				+1.5
1,616,453	+				-0.3
1,616,456	+				+0.7
1,616,471	-				-1.4
1,616,471	-				-0.3
1,616,474	+				-0.6
1,616,474	+				+0.3
1,616,474	+				-0.0
1,616,489	+				+0.7
1,616,489	+				+0.6
1,616,489	+				-2.1
1,616,495	+				-0.1
1,616,496	-				+1.0
1,616,496	-				-0.7
1,616,496	-				-0.0
1,616,496	-				+0.1
1,616,496	-				-1.6
1,616,496	-				-0.4
1,616,496	-				-0.0
1,616,497	+				+1.1
1,616,497	+				+0.6
1,616,497	+				-0.8
1,616,497	+				-2.4
1,616,497	+				-0.1
1,616,497	+				-0.7
1,616,498	-				-0.7
1,616,498	-				-0.3
1,616,498	-				-0.2
1,616,498	-				-0.4
1,616,498	-				-0.8
1,616,498	-				-0.3
1,616,498	-				-1.2
1,616,498	-				+0.4
1,616,499	+				-0.3
1,616,499	+				-0.5
1,616,499	+				+0.2
1,616,500	-				-0.1
1,616,500	-				+1.5
1,616,500	-				-2.2
1,616,500	-				+0.1
1,616,500	-				-1.4
1,616,500	-				-0.9
1,616,500	-				-0.3
1,616,500	-				-0.6
1,616,500	-				-0.1
1,616,522	+				+0.4
1,616,586	+		HER17_RS21925	0.13	+3.1
1,616,595	+		HER17_RS21925	0.14	-0.4
1,616,595	+		HER17_RS21925	0.14	-1.6
1,616,595	+		HER17_RS21925	0.14	-0.2
1,616,596	-		HER17_RS21925	0.14	+0.5
1,616,596	-		HER17_RS21925	0.14	+0.8
1,616,596	-		HER17_RS21925	0.14	-0.7
1,616,596	-		HER17_RS21925	0.14	+0.3
1,616,596	-		HER17_RS21925	0.14	-0.0
1,616,596	-		HER17_RS21925	0.14	-1.1
1,616,596	-		HER17_RS21925	0.14	+1.0
1,616,596	-		HER17_RS21925	0.14	-0.6
1,616,597	+		HER17_RS21925	0.14	+1.1
1,616,597	+		HER17_RS21925	0.14	+0.2
1,616,598	-		HER17_RS21925	0.14	-0.9
1,616,607	+		HER17_RS21925	0.15	+0.7
1,616,640	+		HER17_RS21925	0.16	+0.7
1,616,712	-		HER17_RS21925	0.20	+0.8
1,616,712	-		HER17_RS21925	0.20	-0.1
1,616,769	+		HER17_RS21925	0.24	-0.1
1,616,770	-		HER17_RS21925	0.24	-0.3
1,616,770	-		HER17_RS21925	0.24	-0.5
1,616,854	+		HER17_RS21925	0.28	-1.0
1,616,855	-		HER17_RS21925	0.28	-0.9
1,616,855	-		HER17_RS21925	0.28	-0.4
1,616,939	+		HER17_RS21925	0.33	+0.5
1,616,939	+		HER17_RS21925	0.33	-0.3
1,616,940	-		HER17_RS21925	0.33	+0.6
1,616,940	-		HER17_RS21925	0.33	-0.8
1,616,942	-		HER17_RS21925	0.33	-1.3
1,616,942	-		HER17_RS21925	0.33	+0.0
1,616,980	+		HER17_RS21925	0.35	+0.9
1,616,981	-		HER17_RS21925	0.35	+0.1
1,616,981	-		HER17_RS21925	0.35	+0.5
1,617,025	+		HER17_RS21925	0.38	-0.3
1,617,025	+		HER17_RS21925	0.38	+0.2
1,617,026	-		HER17_RS21925	0.38	+0.4
1,617,035	-		HER17_RS21925	0.38	-0.5
1,617,035	-		HER17_RS21925	0.38	+0.1
1,617,035	-		HER17_RS21925	0.38	-1.3
1,617,057	+		HER17_RS21925	0.40	+0.4
1,617,058	-		HER17_RS21925	0.40	-0.6
1,617,059	+		HER17_RS21925	0.40	-0.2
1,617,075	-		HER17_RS21925	0.41	-0.4
1,617,278	-		HER17_RS21925	0.52	+0.3
1,617,279	+		HER17_RS21925	0.52	+0.3
1,617,293	+		HER17_RS21925	0.53	-0.8
1,617,293	+		HER17_RS21925	0.53	+0.9
1,617,293	+		HER17_RS21925	0.53	-0.2
1,617,317	+		HER17_RS21925	0.54	-0.9
1,617,331	-		HER17_RS21925	0.55	-1.9
1,617,375	-		HER17_RS21925	0.57	-1.6
1,617,405	-		HER17_RS21925	0.59	+0.1
1,617,479	+		HER17_RS21925	0.63	+0.1
1,617,479	+		HER17_RS21925	0.63	+1.7
1,617,480	-		HER17_RS21925	0.63	+1.1
1,617,483	+		HER17_RS21925	0.63	+0.2
1,617,483	+		HER17_RS21925	0.63	+0.4
1,617,591	-		HER17_RS21925	0.69	-0.5
1,617,655	+		HER17_RS21925	0.73	+1.8
1,617,656	-		HER17_RS21925	0.73	+0.7
1,617,739	-		HER17_RS21925	0.77	-0.6
1,617,764	+		HER17_RS21925	0.79	-0.5
1,617,765	-		HER17_RS21925	0.79	-0.2
1,617,765	-		HER17_RS21925	0.79	+0.4
1,617,940	+		HER17_RS21925	0.89	-0.1
1,617,941	-		HER17_RS21925	0.89	-0.9
1,617,941	-		HER17_RS21925	0.89	-0.8
1,617,941	-		HER17_RS21925	0.89	+0.4
1,617,941	-		HER17_RS21925	0.89	-0.8
1,617,984	-				+0.7
1,618,015	+				+1.0
1,618,015	+				+0.6
1,618,089	+				+0.7
1,618,103	-				+0.1
1,618,167	+				-0.1
1,618,178	+				+0.1
1,618,179	-				+0.5
1,618,181	+				-0.1
1,618,197	-				-0.6
1,618,220	-				+1.1
1,618,254	-				-0.9
1,618,254	-				+0.3
1,618,336	+				+0.1
1,618,405	+				+0.1
1,618,495	+				+0.2
1,618,495	+				-0.7
1,618,496	-				-0.8
1,618,496	-				+0.5
1,618,924	-		HER17_RS07305	0.43	+0.0
1,619,001	-		HER17_RS07305	0.49	+0.0
1,619,016	-		HER17_RS07305	0.50	-1.4