Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21480

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,815,293	-				+1.4
4,815,293	-				+0.9
4,815,328	-				+0.3
4,815,420	-				+0.5
4,815,423	-				+0.4
4,815,463	+				+0.0
4,815,535	+				-0.1
4,815,554	-				-0.4
4,815,554	-				+0.8
4,815,555	+				-0.3
4,815,555	+				+0.3
4,815,556	-				-0.3
4,815,556	-				+0.7
4,815,585	+				-0.4
4,815,586	-				+0.8
4,815,587	+				-0.6
4,815,587	+				-0.7
4,815,587	+				-0.6
4,815,587	+				-0.3
4,815,588	-				-1.1
4,815,623	+				+0.2
4,815,623	+				+0.4
4,815,672	-				-1.1
4,815,720	+		HER17_RS21475	0.15	-1.6
4,815,721	-		HER17_RS21475	0.15	-0.5
4,815,721	-		HER17_RS21475	0.15	-0.5
4,815,724	+		HER17_RS21475	0.16	-1.3
4,815,756	-		HER17_RS21475	0.21	-0.8
4,815,814	+		HER17_RS21475	0.30	-1.6
4,815,815	-		HER17_RS21475	0.30	-1.5
4,815,875	-		HER17_RS21475	0.40	-1.6
4,816,107	+		HER17_RS21475	0.77	-1.8
4,816,153	+		HER17_RS21475	0.84	-2.6
4,816,153	+		HER17_RS21475	0.84	-0.5
4,816,163	+		HER17_RS21475	0.86	-0.5
4,816,163	+		HER17_RS21475	0.86	+0.5
4,816,164	-		HER17_RS21475	0.86	-3.9
4,816,167	+		HER17_RS21475	0.87	-2.8
4,816,168	-		HER17_RS21475	0.87	-1.1
4,816,204	+				+0.5
4,816,205	-				-0.5
4,816,289	+				+0.3
4,816,295	+				+0.1
4,816,296	-				-0.5
4,816,296	-				+0.8
4,816,330	+				-0.9
4,816,330	+				-1.4
4,816,331	-				+0.9
4,816,334	+				-0.3
4,816,432	-		HER17_RS21480	0.16	-0.1
4,816,432	-		HER17_RS21480	0.16	+0.2
4,816,435	-		HER17_RS21480	0.16	-0.3
4,816,435	-		HER17_RS21480	0.16	-2.1
4,816,506	+		HER17_RS21480	0.24	-0.5
4,816,506	+		HER17_RS21480	0.24	-0.1
4,816,506	+		HER17_RS21480	0.24	+0.4
4,816,507	-		HER17_RS21480	0.24	+0.3
4,816,515	-		HER17_RS21480	0.24	-1.1
4,816,515	-		HER17_RS21480	0.24	+0.0
4,816,534	+		HER17_RS21480	0.26	+0.2
4,816,534	+		HER17_RS21480	0.26	+0.2
4,816,534	+		HER17_RS21480	0.26	+1.3
4,816,535	-		HER17_RS21480	0.26	+2.0
4,816,535	-		HER17_RS21480	0.26	+0.3
4,816,571	+		HER17_RS21480	0.30	+0.3
4,816,572	-		HER17_RS21480	0.30	-0.9
4,816,572	-		HER17_RS21480	0.30	-0.3
4,816,581	-		HER17_RS21480	0.31	-0.1
4,816,620	-		HER17_RS21480	0.35	+0.1
4,816,642	+		HER17_RS21480	0.37	+1.1
4,816,754	+		HER17_RS21480	0.49	+1.2
4,816,754	+		HER17_RS21480	0.49	-0.6
4,816,754	+		HER17_RS21480	0.49	-0.1
4,816,755	-		HER17_RS21480	0.49	-0.2
4,816,763	+		HER17_RS21480	0.50	-1.3
4,816,763	+		HER17_RS21480	0.50	+0.2
4,816,806	+		HER17_RS21480	0.54	+0.6
4,816,895	+		HER17_RS21480	0.63	+0.4
4,816,896	-		HER17_RS21480	0.63	+0.3
4,816,896	-		HER17_RS21480	0.63	+0.1
4,816,968	+		HER17_RS21480	0.70	+0.5
4,816,968	+		HER17_RS21480	0.70	+0.6
4,816,990	+		HER17_RS21480	0.73	-0.4
4,817,012	-		HER17_RS21480	0.75	-0.1
4,817,012	-		HER17_RS21480	0.75	-0.2
4,817,047	+		HER17_RS21480	0.78	+0.4
4,817,113	+		HER17_RS21480	0.85	-0.1
4,817,137	-		HER17_RS21480	0.87	+0.2
4,817,137	-		HER17_RS21480	0.87	-0.1
4,817,151	+		HER17_RS21480	0.89	-0.3
4,817,151	+		HER17_RS21480	0.89	+0.9
4,817,159	+		HER17_RS21480	0.90	-0.8
4,817,289	-				-0.3
4,817,289	-				+0.1
4,817,295	+				+0.7
4,817,296	-				-0.2
4,817,296	-				+0.6
4,817,296	-				-1.8
4,817,306	+				+1.5
4,817,307	-				+0.2
4,817,307	-				+0.1
4,817,310	+				-0.1
4,817,328	-				-0.6
4,817,341	-				-0.3
4,817,350	+				+0.4
4,817,350	+				-0.3
4,817,351	-				-0.1
4,817,380	+		HER17_RS21485	0.15	-0.2
4,817,380	+		HER17_RS21485	0.15	-0.2
4,817,381	-		HER17_RS21485	0.16	+0.7
4,817,394	+		HER17_RS21485	0.20	-0.0
4,817,428	+		HER17_RS21485	0.33	+0.1
4,817,454	+		HER17_RS21485	0.43	+0.2
4,817,455	-		HER17_RS21485	0.43	-0.6
4,817,458	+		HER17_RS21485	0.44	-1.8
4,817,459	-		HER17_RS21485	0.44	+1.5
4,817,459	-		HER17_RS21485	0.44	-0.3
4,817,483	+		HER17_RS21485	0.53	+0.1
4,817,483	+		HER17_RS21485	0.53	-0.5
4,817,483	+		HER17_RS21485	0.53	-0.3
4,817,483	+		HER17_RS21485	0.53	+0.9
4,817,484	-		HER17_RS21485	0.54	-1.2
4,817,581	+		HER17_RS21485	0.90	+0.6
4,817,581	+		HER17_RS21485	0.90	+0.9
4,817,581	+		HER17_RS21485	0.90	-0.6
4,817,620	+				+0.4
4,817,674	-				+1.1
4,817,682	+				+1.2
4,817,683	-				-0.2
4,817,683	-				+0.0
4,817,683	-				+0.3
4,817,683	-				+0.3
4,817,684	+				-1.9
4,817,684	+				+0.1
4,817,684	+				+0.1
4,817,685	-				-0.1
4,817,685	-				+0.8
4,817,685	-				+0.4
4,817,685	-				-1.2
4,817,685	-				+1.1
4,817,685	-				+0.2
4,817,691	-				+0.2
4,817,753	+				-0.7
4,817,754	-				+0.2
4,817,760	+				-0.5
4,817,760	+				+1.2
4,817,760	+				+1.1
4,817,760	+				-0.5
4,817,760	+				+1.0
4,817,761	-				-0.3
4,817,764	+				+0.3
4,817,764	+				+0.7
4,817,764	+				+0.2
4,817,765	-				+0.4
4,817,765	-				+0.1
4,817,765	-				-0.5
4,817,765	-				-0.2
4,817,802	+				+0.7
4,817,802	+				+0.6
4,817,802	+				-0.2
4,817,802	+				+0.8
4,817,802	+				+0.6
4,817,803	-				-0.1
4,817,806	+				+0.5
4,817,807	-				-0.3
4,817,807	-				+0.2
4,817,807	-				-2.2
4,817,807	-				-0.2
4,817,807	-				-0.8
4,817,807	-				-0.4
4,817,807	-				+0.2
4,817,888	+		HER17_RS21490	0.12	+0.8
4,817,909	+		HER17_RS21490	0.15	-0.1
4,817,909	+		HER17_RS21490	0.15	+0.8
4,817,911	+		HER17_RS21490	0.16	+0.4
4,817,911	+		HER17_RS21490	0.16	+0.1
4,817,911	+		HER17_RS21490	0.16	-0.7
4,817,912	-		HER17_RS21490	0.16	+0.5
4,817,986	+		HER17_RS21490	0.28	-0.2
4,817,986	+		HER17_RS21490	0.28	+0.3
4,818,092	+		HER17_RS21490	0.47	+0.2
4,818,092	+		HER17_RS21490	0.47	+1.5
4,818,093	-		HER17_RS21490	0.47	+0.1
4,818,176	-		HER17_RS21490	0.61	+0.3
4,818,176	-		HER17_RS21490	0.61	+1.0
4,818,209	+		HER17_RS21490	0.67	-0.1
4,818,209	+		HER17_RS21490	0.67	-0.4
4,818,209	+		HER17_RS21490	0.67	-0.8
4,818,210	-		HER17_RS21490	0.67	+0.5
4,818,210	-		HER17_RS21490	0.67	-1.1
4,818,215	+		HER17_RS21490	0.68	+0.9
4,818,216	-		HER17_RS21490	0.68	+0.7
4,818,216	-		HER17_RS21490	0.68	-0.7
4,818,219	+		HER17_RS21490	0.69	-0.1
4,818,219	+		HER17_RS21490	0.69	+0.2
4,818,219	+		HER17_RS21490	0.69	-0.2
4,818,219	+		HER17_RS21490	0.69	+0.7
4,818,220	-		HER17_RS21490	0.69	+0.1
4,818,222	+		HER17_RS21490	0.69	+0.1
4,818,223	-		HER17_RS21490	0.69	+0.3
4,818,223	-		HER17_RS21490	0.69	-0.0
4,818,250	+		HER17_RS21490	0.74	+0.7
4,818,250	+		HER17_RS21490	0.74	+0.1
4,818,250	+		HER17_RS21490	0.74	+0.1
4,818,251	-		HER17_RS21490	0.74	+0.7
4,818,251	-		HER17_RS21490	0.74	+0.2