Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21450

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,807,958	+		HER17_RS21440	0.53	-0.3
4,807,958	+		HER17_RS21440	0.53	-0.1
4,807,958	+		HER17_RS21440	0.53	-1.1
4,807,959	-		HER17_RS21440	0.53	-0.1
4,807,959	-		HER17_RS21440	0.53	-0.4
4,807,959	-		HER17_RS21440	0.53	-0.1
4,808,040	+		HER17_RS21440	0.59	-0.4
4,808,040	+		HER17_RS21440	0.59	+0.4
4,808,041	-		HER17_RS21440	0.59	+0.5
4,808,185	+		HER17_RS21440	0.69	-1.8
4,808,186	-		HER17_RS21440	0.69	-1.1
4,808,258	+		HER17_RS21440	0.74	-0.7
4,808,267	+		HER17_RS21440	0.75	-0.7
4,808,342	+		HER17_RS21440	0.80	-1.1
4,808,342	+		HER17_RS21440	0.80	-0.6
4,808,342	+		HER17_RS21440	0.80	+0.9
4,808,342	+		HER17_RS21440	0.80	-1.7
4,808,343	-		HER17_RS21440	0.80	-0.5
4,808,403	+		HER17_RS21440	0.84	+0.6
4,808,403	+		HER17_RS21440	0.84	+0.7
4,808,404	-		HER17_RS21440	0.84	-2.0
4,808,404	-		HER17_RS21440	0.84	-0.3
4,808,517	+				+0.4
4,808,518	-				-0.3
4,808,528	+				+0.1
4,808,528	+				-0.4
4,808,528	+				-0.6
4,808,536	-				-1.4
4,808,548	-				-0.8
4,808,586	+				+0.8
4,808,587	-				-0.9
4,808,598	+				-0.2
4,808,599	-				-0.7
4,808,599	-				-0.5
4,808,640	+				+0.4
4,808,672	+				-0.5
4,808,706	-				-0.3
4,808,717	+				+0.4
4,808,717	+				+1.4
4,808,718	-				-0.1
4,808,718	-				+0.1
4,808,718	-				+1.1
4,808,718	-				+0.1
4,808,718	-				-0.7
4,808,737	+				+0.4
4,808,737	+				+0.5
4,808,737	+				+0.2
4,808,737	+				-0.5
4,808,737	+				-0.2
4,808,738	-				+0.4
4,808,738	-				-0.4
4,808,738	-				+0.7
4,808,847	-		HER17_RS21445	0.63	+0.3
4,808,876	+		HER17_RS21445	0.87	+0.1
4,808,877	-		HER17_RS21445	0.88	+0.0
4,808,877	-		HER17_RS21445	0.88	-0.7
4,808,877	-		HER17_RS21445	0.88	+0.5
4,808,895	+				+0.8
4,808,895	+				+0.3
4,808,896	-				-1.7
4,808,896	-				-0.1
4,808,923	-				+0.0
4,808,926	-				+0.9
4,808,926	-				+0.0
4,808,926	-				-1.0
4,808,989	+				+0.1
4,808,990	-				+0.5
4,808,993	+				+0.5
4,808,993	+				+0.2
4,808,993	+				-0.5
4,808,994	-				+0.1
4,808,994	-				+1.4
4,808,997	+				+0.6
4,808,997	+				-0.2
4,808,998	-				-1.1
4,808,998	-				-0.3
4,808,998	-				+0.8
4,809,013	+				+1.2
4,809,013	+				-1.8
4,809,019	+				-0.9
4,809,020	-				+0.0
4,809,073	+				+0.2
4,809,074	-				+0.5
4,809,129	+		HER17_RS21450	0.13	-2.1
4,809,129	+		HER17_RS21450	0.13	+0.5
4,809,129	+		HER17_RS21450	0.13	+0.0
4,809,129	+		HER17_RS21450	0.13	+0.8
4,809,150	+		HER17_RS21450	0.14	-0.4
4,809,150	+		HER17_RS21450	0.14	-0.0
4,809,151	-		HER17_RS21450	0.15	-0.1
4,809,151	-		HER17_RS21450	0.15	+0.1
4,809,151	-		HER17_RS21450	0.15	+0.1
4,809,171	+		HER17_RS21450	0.16	+0.0
4,809,171	+		HER17_RS21450	0.16	-0.3
4,809,171	+		HER17_RS21450	0.16	+0.5
4,809,171	+		HER17_RS21450	0.16	-0.3
4,809,171	+		HER17_RS21450	0.16	+3.5
4,809,171	+		HER17_RS21450	0.16	+0.3
4,809,172	-		HER17_RS21450	0.16	+0.1
4,809,172	-		HER17_RS21450	0.16	+0.5
4,809,172	-		HER17_RS21450	0.16	+0.5
4,809,172	-		HER17_RS21450	0.16	+1.4
4,809,202	+		HER17_RS21450	0.18	+0.3
4,809,202	+		HER17_RS21450	0.18	+0.9
4,809,203	-		HER17_RS21450	0.18	+0.3
4,809,243	-		HER17_RS21450	0.21	+0.2
4,809,243	-		HER17_RS21450	0.21	+0.0
4,809,285	+		HER17_RS21450	0.24	+0.6
4,809,285	+		HER17_RS21450	0.24	+0.6
4,809,286	-		HER17_RS21450	0.24	-0.5
4,809,286	-		HER17_RS21450	0.24	+0.3
4,809,288	+		HER17_RS21450	0.25	+0.5
4,809,288	+		HER17_RS21450	0.25	-0.2
4,809,289	-		HER17_RS21450	0.25	-0.3
4,809,318	+		HER17_RS21450	0.27	+0.6
4,809,318	+		HER17_RS21450	0.27	+2.1
4,809,318	+		HER17_RS21450	0.27	+0.3
4,809,318	+		HER17_RS21450	0.27	+1.0
4,809,318	+		HER17_RS21450	0.27	+0.0
4,809,319	-		HER17_RS21450	0.27	+0.2
4,809,319	-		HER17_RS21450	0.27	-1.1
4,809,319	-		HER17_RS21450	0.27	-0.1
4,809,319	-		HER17_RS21450	0.27	+0.2
4,809,319	-		HER17_RS21450	0.27	+0.4
4,809,319	-		HER17_RS21450	0.27	-0.6
4,809,319	-		HER17_RS21450	0.27	+0.2
4,809,319	-		HER17_RS21450	0.27	-0.2
4,809,319	-		HER17_RS21450	0.27	+0.8
4,809,319	-		HER17_RS21450	0.27	-0.9
4,809,319	-		HER17_RS21450	0.27	+0.1
4,809,319	-		HER17_RS21450	0.27	-1.3
4,809,319	-		HER17_RS21450	0.27	+0.9
4,809,319	-		HER17_RS21450	0.27	-0.1
4,809,319	-		HER17_RS21450	0.27	-1.3
4,809,319	-		HER17_RS21450	0.27	+0.7
4,809,319	-		HER17_RS21450	0.27	+0.3
4,809,319	-		HER17_RS21450	0.27	-1.8
4,809,319	-		HER17_RS21450	0.27	+0.3
4,809,319	-		HER17_RS21450	0.27	-0.8
4,809,319	-		HER17_RS21450	0.27	-1.3
4,809,322	+		HER17_RS21450	0.27	-0.9
4,809,322	+		HER17_RS21450	0.27	-0.6
4,809,322	+		HER17_RS21450	0.27	+0.4
4,809,323	-		HER17_RS21450	0.27	-0.1
4,809,323	-		HER17_RS21450	0.27	-0.2
4,809,323	-		HER17_RS21450	0.27	+0.4
4,809,323	-		HER17_RS21450	0.27	+0.4
4,809,323	-		HER17_RS21450	0.27	-0.6
4,809,323	-		HER17_RS21450	0.27	+0.2
4,809,323	-		HER17_RS21450	0.27	+0.7
4,809,334	+		HER17_RS21450	0.28	-0.1
4,809,335	-		HER17_RS21450	0.28	-0.1
4,809,337	+		HER17_RS21450	0.28	+0.4
4,809,338	-		HER17_RS21450	0.28	+0.0
4,809,387	+		HER17_RS21450	0.32	-0.1
4,809,388	-		HER17_RS21450	0.32	+0.1
4,809,520	+		HER17_RS21450	0.41	+0.3
4,809,521	-		HER17_RS21450	0.41	+0.1
4,809,560	-		HER17_RS21450	0.44	+0.8
4,809,565	+		HER17_RS21450	0.45	+0.5
4,809,591	-		HER17_RS21450	0.47	+0.5
4,809,600	+		HER17_RS21450	0.47	-0.2
4,809,600	+		HER17_RS21450	0.47	+0.8
4,809,600	+		HER17_RS21450	0.47	+1.3
4,809,600	+		HER17_RS21450	0.47	+0.5
4,809,600	+		HER17_RS21450	0.47	+0.5
4,809,600	+		HER17_RS21450	0.47	-0.2
4,809,600	+		HER17_RS21450	0.47	-1.8
4,809,601	-		HER17_RS21450	0.47	+0.6
4,809,601	-		HER17_RS21450	0.47	+0.3
4,809,604	+		HER17_RS21450	0.48	+0.0
4,809,604	+		HER17_RS21450	0.48	+0.4
4,809,605	-		HER17_RS21450	0.48	-0.4
4,809,605	-		HER17_RS21450	0.48	+0.1
4,809,614	-		HER17_RS21450	0.48	-0.2
4,809,648	-		HER17_RS21450	0.51	+0.5
4,809,653	-		HER17_RS21450	0.51	+1.0
4,809,653	-		HER17_RS21450	0.51	-1.1
4,809,653	-		HER17_RS21450	0.51	-0.3
4,809,799	+		HER17_RS21450	0.62	-0.4
4,809,802	+		HER17_RS21450	0.62	+0.6
4,809,910	+		HER17_RS21450	0.70	-0.9
4,809,963	-		HER17_RS21450	0.74	-0.1
4,809,963	-		HER17_RS21450	0.74	+1.2
4,809,963	-		HER17_RS21450	0.74	-0.3
4,809,963	-		HER17_RS21450	0.74	+0.2
4,809,967	+		HER17_RS21450	0.74	-0.2
4,809,968	-		HER17_RS21450	0.74	-0.4
4,809,968	-		HER17_RS21450	0.74	+0.0
4,809,975	+		HER17_RS21450	0.75	-0.4
4,809,975	+		HER17_RS21450	0.75	-0.1
4,809,976	-		HER17_RS21450	0.75	+0.1
4,809,976	-		HER17_RS21450	0.75	+0.6
4,809,976	-		HER17_RS21450	0.75	+0.1
4,810,015	+		HER17_RS21450	0.77	+0.6
4,810,015	+		HER17_RS21450	0.77	-0.4
4,810,015	+		HER17_RS21450	0.77	+0.8
4,810,015	+		HER17_RS21450	0.77	+0.3
4,810,016	-		HER17_RS21450	0.78	+0.3
4,810,016	-		HER17_RS21450	0.78	+0.1
4,810,016	-		HER17_RS21450	0.78	+0.1
4,810,016	-		HER17_RS21450	0.78	+0.4
4,810,016	-		HER17_RS21450	0.78	-0.1
4,810,071	+		HER17_RS21450	0.82	-0.8
4,810,071	+		HER17_RS21450	0.82	-0.0
4,810,071	+		HER17_RS21450	0.82	-0.4
4,810,071	+		HER17_RS21450	0.82	+0.7
4,810,071	+		HER17_RS21450	0.82	+0.7
4,810,071	+		HER17_RS21450	0.82	-0.1
4,810,072	-		HER17_RS21450	0.82	-0.7
4,810,072	-		HER17_RS21450	0.82	-0.3
4,810,072	-		HER17_RS21450	0.82	-0.4
4,810,084	+		HER17_RS21450	0.82	+0.0
4,810,085	-		HER17_RS21450	0.83	+0.9
4,810,108	+		HER17_RS21450	0.84	-0.3
4,810,109	-		HER17_RS21450	0.84	+0.4
4,810,111	+		HER17_RS21450	0.84	-0.6
4,810,112	-		HER17_RS21450	0.84	-0.1
4,810,112	-		HER17_RS21450	0.84	-0.9
4,810,112	-		HER17_RS21450	0.84	-0.6
4,810,112	-		HER17_RS21450	0.84	-0.1
4,810,125	+		HER17_RS21450	0.85	-0.3
4,810,125	+		HER17_RS21450	0.85	+0.5
4,810,125	+		HER17_RS21450	0.85	-0.1
4,810,156	+		HER17_RS21450	0.88	-0.7
4,810,158	+		HER17_RS21450	0.88	+0.5
4,810,159	-		HER17_RS21450	0.88	-0.3
4,810,159	-		HER17_RS21450	0.88	+0.4
4,810,235	+				-0.3
4,810,236	-				-0.3
4,810,249	-				+1.4
4,810,255	+				-0.2
4,810,255	+				+0.2
4,810,255	+				-0.4
4,810,255	+				+0.0
4,810,255	+				+0.3
4,810,255	+				-0.0
4,810,255	+				-1.1
4,810,256	-				+0.9
4,810,256	-				-0.5
4,810,257	+				+0.2
4,810,272	+				-0.7
4,810,272	+				+0.3
4,810,272	+				+0.7
4,810,272	+				-1.0
4,810,272	+				-0.1
4,810,272	+				-0.3
4,810,273	-				-0.5
4,810,279	-				+0.9
4,810,279	-				-0.1
4,810,324	+				+0.9
4,810,324	+				-0.8
4,810,325	-				-0.7
4,810,325	-				-2.1
4,810,325	-				-0.1
4,810,325	-				+0.6
4,810,325	-				-0.7
4,810,421	+				+0.2
4,810,556	-		HER17_RS21455	0.49	+0.2
4,810,556	-		HER17_RS21455	0.49	-0.2
4,810,569	-		HER17_RS21455	0.57	-0.9
4,810,569	-		HER17_RS21455	0.57	+0.2
4,810,574	+		HER17_RS21455	0.60	-0.3
4,810,574	+		HER17_RS21455	0.60	-0.2
4,810,574	+		HER17_RS21455	0.60	+0.3
4,810,574	+		HER17_RS21455	0.60	+0.2
4,810,574	+		HER17_RS21455	0.60	-1.2
4,810,575	-		HER17_RS21455	0.60	+0.8
4,810,575	-		HER17_RS21455	0.60	+0.5
4,810,575	-		HER17_RS21455	0.60	-0.8
4,810,575	-		HER17_RS21455	0.60	+0.4
4,810,575	-		HER17_RS21455	0.60	-0.1
4,810,600	-		HER17_RS21455	0.75	+1.0
4,810,600	-		HER17_RS21455	0.75	+0.3
4,810,616	+		HER17_RS21455	0.84	+0.4
4,810,617	-		HER17_RS21455	0.85	+0.9
4,810,617	-		HER17_RS21455	0.85	-0.5
4,810,647	+				-0.1
4,810,647	+				-1.1
4,810,647	+				-2.5
4,810,648	-				+0.3
4,810,648	-				-1.3
4,810,648	-				-0.4
4,810,648	-				+0.9
4,810,648	-				-0.2
4,810,669	+				-0.1
4,810,669	+				+0.0
4,810,669	+				+0.3
4,810,690	+				+0.1
4,810,690	+				+0.0
4,810,690	+				+0.1
4,810,690	+				-0.2
4,810,691	-				+1.2
4,810,691	-				-0.2
4,810,691	-				-0.3
4,810,759	+		HER17_RS21460	0.20	-0.3
4,810,760	-		HER17_RS21460	0.21	-0.1
4,810,967	+		HER17_RS21460	0.58	+0.7
4,811,020	+		HER17_RS21460	0.67	+2.1
4,811,096	-		HER17_RS21460	0.81	+0.7
4,811,200	+				+0.5
4,811,200	+				-0.5
4,811,200	+				-0.2
4,811,201	-				-0.8
4,811,201	-				-0.0
4,811,201	-				+0.0
4,811,203	+				+0.0
4,811,203	+				+0.9
4,811,203	+				-0.4
4,811,203	+				-2.4
4,811,204	-				-0.9
4,811,204	-				+0.4
4,811,204	-				-0.5
4,811,216	+				+0.4
4,811,217	-				-0.1
4,811,224	+				+0.3
4,811,224	+				+0.2
4,811,224	+				-1.5
4,811,224	+				+1.0
4,811,224	+				+0.4
4,811,224	+				+0.4
4,811,224	+				-0.1
4,811,224	+				+1.0
4,811,224	+				+0.7
4,811,224	+				+1.5
4,811,224	+				+0.5
4,811,224	+				-0.8
4,811,224	+				+0.9
4,811,224	+				+0.6
4,811,225	-				-0.2
4,811,225	-				-1.5
4,811,225	-				-0.4
4,811,225	-				+0.5
4,811,225	-				+0.7
4,811,225	-				+0.0
4,811,225	-				+0.6
4,811,225	-				-0.4
4,811,225	-				-1.1
4,811,226	+				+0.4
4,811,227	-				+0.7
4,811,227	-				+0.4
4,811,227	-				-0.2
4,811,227	-				-0.1
4,811,227	-				+0.4
4,811,227	-				+0.2
4,811,227	-				+0.9
4,811,247	+				-0.5
4,811,247	+				+0.7