Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21085

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,716,208	+		HER17_RS21080	0.52	+0.1
4,716,209	-		HER17_RS21080	0.52	+0.2
4,716,211	+		HER17_RS21080	0.52	-2.1
4,716,241	-		HER17_RS21080	0.55	+0.3
4,716,271	-		HER17_RS21080	0.58	+0.7
4,716,366	-		HER17_RS21080	0.68	-0.1
4,716,391	+		HER17_RS21080	0.70	+0.1
4,716,434	+		HER17_RS21080	0.75	+0.2
4,716,434	+		HER17_RS21080	0.75	+0.2
4,716,434	+		HER17_RS21080	0.75	-1.1
4,716,465	-		HER17_RS21080	0.78	+0.2
4,716,603	-				-0.3
4,716,638	+				+0.5
4,716,639	-				+0.0
4,716,639	-				+0.1
4,716,639	-				-0.4
4,716,688	+				+0.6
4,716,689	-				+0.0
4,716,706	+				-0.9
4,716,707	-				-1.3
4,716,777	+				+1.1
4,716,785	+				-0.1
4,716,785	+				+1.4
4,716,823	+				+0.9
4,716,823	+				-0.6
4,716,823	+				+0.2
4,716,824	-				+0.8
4,716,824	-				-0.9
4,716,824	-				-2.3
4,716,824	-				+0.5
4,716,865	+				+1.0
4,716,865	+				+0.7
4,716,866	-				-1.5
4,716,866	-				+0.2
4,716,866	-				+0.7
4,716,874	+				+0.5
4,716,878	+				+0.2
4,716,879	-				+0.1
4,716,903	+				+0.2
4,716,914	+				-0.6
4,716,915	-				-1.5
4,716,960	-				+0.1
4,716,990	+				-0.6
4,716,991	-				+1.0
4,717,002	+				-0.5
4,717,002	+				+0.1
4,717,003	-				+0.2
4,717,003	-				+0.3
4,717,011	+				+0.5
4,717,079	+				-1.4
4,717,079	+				-0.8
4,717,079	+				+0.5
4,717,080	-				+0.2
4,717,112	-				-0.3
4,717,147	+				+0.3
4,717,155	+				+0.4
4,717,169	+				+0.4
4,717,197	-				+0.7
4,717,204	+				-0.3
4,717,239	-				+1.5
4,717,239	-				-0.1
4,717,239	-				+0.5
4,717,257	+				-0.2
4,717,271	-				+0.4
4,717,334	-		HER17_RS21085	0.13	+0.2
4,717,448	+		HER17_RS21085	0.22	-0.2
4,717,448	+		HER17_RS21085	0.22	+0.2
4,717,449	-		HER17_RS21085	0.22	+0.6
4,717,449	-		HER17_RS21085	0.22	+0.2
4,717,449	-		HER17_RS21085	0.22	-0.2
4,717,449	-		HER17_RS21085	0.22	+0.4
4,717,451	+		HER17_RS21085	0.22	+0.6
4,717,451	+		HER17_RS21085	0.22	+0.2
4,717,502	+		HER17_RS21085	0.26	-2.1
4,717,502	+		HER17_RS21085	0.26	+1.0
4,717,503	-		HER17_RS21085	0.26	+0.8
4,717,503	-		HER17_RS21085	0.26	+0.9
4,717,569	+		HER17_RS21085	0.31	+0.2
4,717,569	+		HER17_RS21085	0.31	-0.1
4,717,569	+		HER17_RS21085	0.31	-0.3
4,717,712	+		HER17_RS21085	0.42	-0.9
4,717,712	+		HER17_RS21085	0.42	+0.2
4,717,713	-		HER17_RS21085	0.42	+0.1
4,717,713	-		HER17_RS21085	0.42	-2.1
4,717,739	+		HER17_RS21085	0.44	+0.2
4,717,816	+		HER17_RS21085	0.50	+0.4
4,717,816	+		HER17_RS21085	0.50	+0.4
4,717,816	+		HER17_RS21085	0.50	-1.5
4,717,817	-		HER17_RS21085	0.50	-0.4
4,717,886	+		HER17_RS21085	0.55	+0.0
4,717,886	+		HER17_RS21085	0.55	-0.6
4,717,887	-		HER17_RS21085	0.55	-0.5
4,717,892	+		HER17_RS21085	0.55	+0.4
4,717,893	-		HER17_RS21085	0.56	-0.3
4,717,893	-		HER17_RS21085	0.56	+0.0
4,717,893	-		HER17_RS21085	0.56	+0.4
4,717,910	+		HER17_RS21085	0.57	+0.9
4,717,911	-		HER17_RS21085	0.57	+0.5
4,717,976	-		HER17_RS21085	0.62	-0.1
4,718,119	-		HER17_RS21085	0.73	-0.1
4,718,126	+		HER17_RS21085	0.73	-0.1
4,718,127	-		HER17_RS21085	0.73	+0.2
4,718,127	-		HER17_RS21085	0.73	+0.1
4,718,242	+		HER17_RS21085	0.82	+0.3
4,718,304	+		HER17_RS21085	0.87	+0.4
4,718,304	+		HER17_RS21085	0.87	-0.2
4,718,305	-		HER17_RS21085	0.87	-0.4
4,718,305	-		HER17_RS21085	0.87	+1.0
4,718,305	-		HER17_RS21085	0.87	-1.2
4,718,318	+		HER17_RS21085	0.88	+0.2
4,718,319	-		HER17_RS21085	0.88	-0.2
4,718,319	-		HER17_RS21085	0.88	+0.1
4,718,362	+				+1.1
4,718,363	-				-1.1
4,718,495	+				+0.2
4,718,495	+				+0.6
4,718,496	-				+1.0
4,718,496	-				-0.6
4,718,499	-				+0.5
4,718,508	+				+0.2
4,718,508	+				-0.2
4,718,509	-				-0.1
4,718,509	-				+0.3
4,718,509	-				-0.2
4,718,528	+				-0.3
4,718,528	+				+1.0
4,718,529	-				-0.3
4,718,541	+				-0.0
4,718,541	+				+1.0
4,718,541	+				-0.1
4,718,541	+				-0.3
4,718,541	+				-0.5
4,718,541	+				+0.4
4,718,541	+				-2.6
4,718,542	-				-0.6
4,718,542	-				+1.2
4,718,542	-				-1.0
4,718,542	-				+0.0
4,718,542	-				+0.9
4,718,545	+				+0.3
4,718,545	+				-0.3
4,718,545	+				+0.1
4,718,545	+				+0.3
4,718,545	+				+0.0
4,718,545	+				+1.3
4,718,545	+				+0.2
4,718,545	+				-0.1
4,718,545	+				+0.7
4,718,545	+				+0.5
4,718,545	+				-0.6
4,718,546	-				-0.2
4,718,546	-				-0.0
4,718,546	-				-0.6
4,718,546	-				+0.4
4,718,546	-				-0.5
4,718,546	-				+0.4
4,718,546	-				+2.4
4,718,546	-				+0.2
4,718,546	-				+0.5
4,718,546	-				+1.2
4,718,546	-				+0.7
4,718,546	-				-0.9
4,718,546	-				-0.4
4,718,546	-				+0.1
4,718,546	-				-0.1
4,718,548	-				-0.7
4,718,880	+		HER17_RS21090	0.23	-0.3
4,718,880	+		HER17_RS21090	0.23	-0.1
4,718,880	+		HER17_RS21090	0.23	+0.3
4,718,880	+		HER17_RS21090	0.23	+0.4
4,718,880	+		HER17_RS21090	0.23	-0.5
4,718,880	+		HER17_RS21090	0.23	+0.5
4,718,881	-		HER17_RS21090	0.23	+0.2
4,719,004	+		HER17_RS21090	0.32	+0.4
4,719,004	+		HER17_RS21090	0.32	+0.2
4,719,148	+		HER17_RS21090	0.42	+1.2
4,719,148	+		HER17_RS21090	0.42	-0.3
4,719,240	+		HER17_RS21090	0.48	+0.6
4,719,240	+		HER17_RS21090	0.48	+1.0
4,719,241	-		HER17_RS21090	0.48	+1.0
4,719,241	-		HER17_RS21090	0.48	-0.6
4,719,241	-		HER17_RS21090	0.48	+0.4
4,719,271	+		HER17_RS21090	0.50	-0.5
4,719,316	+		HER17_RS21090	0.53	+0.0
4,719,317	-		HER17_RS21090	0.53	+0.5
4,719,416	+		HER17_RS21090	0.60	+0.1