Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18985 and HER17_RS18990 are separated by 73 nucleotides HER17_RS18990 and HER17_RS18995 overlap by 4 nucleotides
HER17_RS18985: HER17_RS18985 - TolC family protein, at 4,265,574 to 4,267,082
_RS18985
HER17_RS18990: HER17_RS18990 - amino acid adenylation domain-containing protein, at 4,267,156 to 4,269,270
_RS18990
HER17_RS18995: HER17_RS18995 - non-ribosomal peptide synthetase, at 4,269,267 to 4,275,584
_RS18995
Position (kb) 4267
4268
4269
4270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4266.250 kb on - strand, within HER17_RS18985 at 4266.250 kb on - strand, within HER17_RS18985 at 4266.250 kb on - strand, within HER17_RS18985 at 4266.361 kb on - strand, within HER17_RS18985 at 4266.398 kb on - strand, within HER17_RS18985 at 4266.475 kb on - strand, within HER17_RS18985 at 4266.475 kb on - strand, within HER17_RS18985 at 4266.475 kb on - strand, within HER17_RS18985 at 4266.521 kb on + strand, within HER17_RS18985 at 4266.521 kb on + strand, within HER17_RS18985 at 4266.558 kb on + strand, within HER17_RS18985 at 4266.719 kb on + strand, within HER17_RS18985 at 4266.720 kb on - strand, within HER17_RS18985 at 4266.730 kb on + strand, within HER17_RS18985 at 4266.730 kb on + strand, within HER17_RS18985 at 4266.730 kb on + strand, within HER17_RS18985 at 4266.730 kb on + strand, within HER17_RS18985 at 4266.730 kb on + strand, within HER17_RS18985 at 4266.731 kb on - strand, within HER17_RS18985 at 4266.731 kb on - strand, within HER17_RS18985 at 4266.731 kb on - strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.732 kb on + strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.733 kb on - strand, within HER17_RS18985 at 4266.773 kb on + strand, within HER17_RS18985 at 4266.774 kb on - strand, within HER17_RS18985 at 4266.806 kb on + strand, within HER17_RS18985 at 4266.834 kb on + strand, within HER17_RS18985 at 4266.859 kb on + strand, within HER17_RS18985 at 4266.859 kb on + strand, within HER17_RS18985 at 4266.919 kb on - strand, within HER17_RS18985 at 4266.919 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.929 kb on - strand, within HER17_RS18985 at 4266.936 kb on - strand at 4266.939 kb on + strand at 4266.940 kb on - strand at 4266.940 kb on - strand at 4266.940 kb on - strand at 4266.949 kb on + strand at 4266.950 kb on - strand at 4266.950 kb on - strand at 4267.090 kb on + strand at 4267.090 kb on + strand at 4267.090 kb on + strand at 4267.124 kb on + strand at 4267.244 kb on + strand at 4267.244 kb on + strand at 4267.244 kb on + strand at 4267.245 kb on - strand at 4267.245 kb on - strand at 4267.245 kb on - strand at 4267.308 kb on + strand at 4267.311 kb on - strand at 4267.320 kb on - strand at 4267.467 kb on - strand, within HER17_RS18990 at 4267.514 kb on + strand, within HER17_RS18990 at 4267.515 kb on - strand, within HER17_RS18990 at 4267.686 kb on + strand, within HER17_RS18990 at 4267.687 kb on - strand, within HER17_RS18990 at 4267.924 kb on + strand, within HER17_RS18990 at 4267.925 kb on - strand, within HER17_RS18990 at 4267.925 kb on - strand, within HER17_RS18990 at 4267.953 kb on - strand, within HER17_RS18990 at 4267.980 kb on - strand, within HER17_RS18990 at 4268.049 kb on + strand, within HER17_RS18990 at 4268.049 kb on + strand, within HER17_RS18990 at 4268.049 kb on + strand, within HER17_RS18990 at 4268.049 kb on + strand, within HER17_RS18990 at 4268.050 kb on - strand, within HER17_RS18990 at 4268.050 kb on - strand, within HER17_RS18990 at 4268.050 kb on - strand, within HER17_RS18990 at 4268.068 kb on - strand, within HER17_RS18990 at 4268.111 kb on - strand, within HER17_RS18990 at 4268.198 kb on + strand, within HER17_RS18990 at 4268.198 kb on + strand, within HER17_RS18990 at 4268.199 kb on - strand, within HER17_RS18990 at 4268.199 kb on - strand, within HER17_RS18990 at 4268.236 kb on + strand, within HER17_RS18990 at 4268.264 kb on + strand, within HER17_RS18990 at 4268.319 kb on + strand, within HER17_RS18990 at 4268.319 kb on + strand, within HER17_RS18990 at 4268.320 kb on - strand, within HER17_RS18990 at 4268.320 kb on - strand, within HER17_RS18990 at 4268.321 kb on + strand, within HER17_RS18990 at 4268.321 kb on + strand, within HER17_RS18990 at 4268.467 kb on - strand, within HER17_RS18990 at 4268.737 kb on + strand, within HER17_RS18990 at 4268.738 kb on - strand, within HER17_RS18990 at 4268.767 kb on + strand, within HER17_RS18990 at 4268.768 kb on - strand, within HER17_RS18990 at 4268.768 kb on - strand, within HER17_RS18990 at 4268.768 kb on - strand, within HER17_RS18990 at 4268.768 kb on - strand, within HER17_RS18990 at 4268.911 kb on - strand, within HER17_RS18990 at 4268.911 kb on - strand, within HER17_RS18990 at 4269.040 kb on + strand, within HER17_RS18990 at 4269.040 kb on + strand, within HER17_RS18990 at 4269.040 kb on + strand, within HER17_RS18990 at 4269.041 kb on - strand, within HER17_RS18990 at 4269.041 kb on - strand, within HER17_RS18990 at 4269.041 kb on - strand, within HER17_RS18990 at 4269.041 kb on - strand, within HER17_RS18990 at 4269.098 kb on + strand at 4269.098 kb on + strand at 4269.098 kb on + strand at 4269.099 kb on - strand at 4269.104 kb on + strand at 4269.110 kb on - strand at 4269.153 kb on + strand at 4269.153 kb on + strand at 4269.156 kb on + strand at 4269.157 kb on - strand at 4269.314 kb on - strand at 4269.340 kb on + strand at 4269.348 kb on + strand at 4269.348 kb on + strand at 4269.349 kb on - strand at 4269.349 kb on - strand at 4269.388 kb on - strand at 4269.519 kb on - strand at 4269.581 kb on + strand at 4269.582 kb on - strand at 4269.582 kb on - strand at 4269.582 kb on - strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.584 kb on + strand at 4269.585 kb on - strand at 4269.585 kb on - strand at 4269.585 kb on - strand at 4269.621 kb on - strand at 4269.800 kb on + strand at 4269.800 kb on + strand at 4269.801 kb on - strand at 4269.801 kb on - strand at 4269.801 kb on - strand at 4269.847 kb on + strand at 4269.848 kb on - strand at 4269.848 kb on - strand at 4269.848 kb on - strand at 4269.857 kb on - strand at 4269.860 kb on + strand at 4269.860 kb on + strand at 4269.860 kb on + strand at 4269.860 kb on + strand at 4269.861 kb on - strand at 4269.861 kb on - strand at 4269.861 kb on - strand at 4269.917 kb on + strand, within HER17_RS18995 at 4269.917 kb on + strand, within HER17_RS18995 at 4270.021 kb on + strand, within HER17_RS18995 at 4270.022 kb on - strand, within HER17_RS18995 at 4270.022 kb on - strand, within HER17_RS18995 at 4270.022 kb on - strand, within HER17_RS18995 at 4270.022 kb on - strand, within HER17_RS18995 at 4270.034 kb on + strand, within HER17_RS18995 at 4270.075 kb on - strand, within HER17_RS18995 at 4270.088 kb on + strand, within HER17_RS18995 at 4270.088 kb on + strand, within HER17_RS18995 at 4270.088 kb on + strand, within HER17_RS18995 at 4270.088 kb on + strand, within HER17_RS18995 at 4270.089 kb on - strand, within HER17_RS18995 at 4270.089 kb on - strand, within HER17_RS18995 at 4270.135 kb on + strand, within HER17_RS18995 at 4270.135 kb on + strand, within HER17_RS18995 at 4270.135 kb on + strand, within HER17_RS18995 at 4270.135 kb on + strand, within HER17_RS18995 at 4270.136 kb on - strand, within HER17_RS18995 at 4270.136 kb on - strand, within HER17_RS18995 at 4270.145 kb on + strand, within HER17_RS18995 at 4270.145 kb on + strand, within HER17_RS18995 at 4270.145 kb on + strand, within HER17_RS18995 at 4270.146 kb on - strand, within HER17_RS18995
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 4,266,250 - HER17_RS18985 0.45 +1.9 4,266,250 - HER17_RS18985 0.45 +0.9 4,266,250 - HER17_RS18985 0.45 -0.4 4,266,361 - HER17_RS18985 0.52 -1.1 4,266,398 - HER17_RS18985 0.55 -0.6 4,266,475 - HER17_RS18985 0.60 +0.1 4,266,475 - HER17_RS18985 0.60 +0.3 4,266,475 - HER17_RS18985 0.60 +1.5 4,266,521 + HER17_RS18985 0.63 +0.2 4,266,521 + HER17_RS18985 0.63 +1.0 4,266,558 + HER17_RS18985 0.65 -0.7 4,266,719 + HER17_RS18985 0.76 +0.3 4,266,720 - HER17_RS18985 0.76 +0.1 4,266,730 + HER17_RS18985 0.77 +0.9 4,266,730 + HER17_RS18985 0.77 +0.9 4,266,730 + HER17_RS18985 0.77 -0.1 4,266,730 + HER17_RS18985 0.77 +0.7 4,266,730 + HER17_RS18985 0.77 -0.0 4,266,731 - HER17_RS18985 0.77 +0.8 4,266,731 - HER17_RS18985 0.77 +1.4 4,266,731 - HER17_RS18985 0.77 +0.4 4,266,732 + HER17_RS18985 0.77 -0.1 4,266,732 + HER17_RS18985 0.77 -0.8 4,266,732 + HER17_RS18985 0.77 -0.1 4,266,732 + HER17_RS18985 0.77 -1.6 4,266,732 + HER17_RS18985 0.77 +0.6 4,266,732 + HER17_RS18985 0.77 +0.2 4,266,732 + HER17_RS18985 0.77 -1.3 4,266,732 + HER17_RS18985 0.77 -0.1 4,266,732 + HER17_RS18985 0.77 +0.8 4,266,732 + HER17_RS18985 0.77 -0.2 4,266,732 + HER17_RS18985 0.77 -0.4 4,266,732 + HER17_RS18985 0.77 +0.4 4,266,732 + HER17_RS18985 0.77 -0.1 4,266,732 + HER17_RS18985 0.77 -0.3 4,266,733 - HER17_RS18985 0.77 +0.9 4,266,733 - HER17_RS18985 0.77 +0.5 4,266,733 - HER17_RS18985 0.77 +0.4 4,266,733 - HER17_RS18985 0.77 +0.1 4,266,733 - HER17_RS18985 0.77 -0.2 4,266,733 - HER17_RS18985 0.77 +0.5 4,266,733 - HER17_RS18985 0.77 -0.6 4,266,733 - HER17_RS18985 0.77 -0.3 4,266,733 - HER17_RS18985 0.77 -0.2 4,266,733 - HER17_RS18985 0.77 +1.4 4,266,733 - HER17_RS18985 0.77 -0.5 4,266,733 - HER17_RS18985 0.77 +0.4 4,266,733 - HER17_RS18985 0.77 -0.3 4,266,773 + HER17_RS18985 0.79 +1.0 4,266,774 - HER17_RS18985 0.80 +0.6 4,266,806 + HER17_RS18985 0.82 +1.1 4,266,834 + HER17_RS18985 0.83 +1.9 4,266,859 + HER17_RS18985 0.85 -0.1 4,266,859 + HER17_RS18985 0.85 +0.6 4,266,919 - HER17_RS18985 0.89 +0.2 4,266,919 - HER17_RS18985 0.89 +0.7 4,266,929 - HER17_RS18985 0.90 -1.0 4,266,929 - HER17_RS18985 0.90 -0.2 4,266,929 - HER17_RS18985 0.90 +0.2 4,266,929 - HER17_RS18985 0.90 +0.5 4,266,929 - HER17_RS18985 0.90 +0.1 4,266,929 - HER17_RS18985 0.90 +0.1 4,266,929 - HER17_RS18985 0.90 +0.5 4,266,936 - -0.4 4,266,939 + -0.6 4,266,940 - -0.1 4,266,940 - +0.5 4,266,940 - +0.2 4,266,949 + -0.1 4,266,950 - +0.0 4,266,950 - -0.4 4,267,090 + -0.8 4,267,090 + -0.5 4,267,090 + +1.4 4,267,124 + +0.4 4,267,244 + +0.2 4,267,244 + -0.8 4,267,244 + +0.1 4,267,245 - +0.5 4,267,245 - +0.3 4,267,245 - +0.2 4,267,308 + +0.4 4,267,311 - +0.6 4,267,320 - +1.9 4,267,467 - HER17_RS18990 0.15 -0.4 4,267,514 + HER17_RS18990 0.17 +0.5 4,267,515 - HER17_RS18990 0.17 -0.5 4,267,686 + HER17_RS18990 0.25 +0.1 4,267,687 - HER17_RS18990 0.25 -0.9 4,267,924 + HER17_RS18990 0.36 +0.7 4,267,925 - HER17_RS18990 0.36 +0.4 4,267,925 - HER17_RS18990 0.36 -0.4 4,267,953 - HER17_RS18990 0.38 +0.7 4,267,980 - HER17_RS18990 0.39 +0.8 4,268,049 + HER17_RS18990 0.42 +0.6 4,268,049 + HER17_RS18990 0.42 -0.6 4,268,049 + HER17_RS18990 0.42 +0.1 4,268,049 + HER17_RS18990 0.42 -0.2 4,268,050 - HER17_RS18990 0.42 +0.4 4,268,050 - HER17_RS18990 0.42 +0.9 4,268,050 - HER17_RS18990 0.42 +0.8 4,268,068 - HER17_RS18990 0.43 +0.1 4,268,111 - HER17_RS18990 0.45 +0.5 4,268,198 + HER17_RS18990 0.49 +1.8 4,268,198 + HER17_RS18990 0.49 +0.1 4,268,199 - HER17_RS18990 0.49 +0.4 4,268,199 - HER17_RS18990 0.49 +0.6 4,268,236 + HER17_RS18990 0.51 +0.1 4,268,264 + HER17_RS18990 0.52 +0.1 4,268,319 + HER17_RS18990 0.55 +0.3 4,268,319 + HER17_RS18990 0.55 -0.2 4,268,320 - HER17_RS18990 0.55 -0.5 4,268,320 - HER17_RS18990 0.55 +0.5 4,268,321 + HER17_RS18990 0.55 -0.1 4,268,321 + HER17_RS18990 0.55 -0.2 4,268,467 - HER17_RS18990 0.62 +0.1 4,268,737 + HER17_RS18990 0.75 -0.4 4,268,738 - HER17_RS18990 0.75 -0.0 4,268,767 + HER17_RS18990 0.76 -0.8 4,268,768 - HER17_RS18990 0.76 +0.7 4,268,768 - HER17_RS18990 0.76 +0.8 4,268,768 - HER17_RS18990 0.76 -0.2 4,268,768 - HER17_RS18990 0.76 +0.4 4,268,911 - HER17_RS18990 0.83 +0.9 4,268,911 - HER17_RS18990 0.83 -0.1 4,269,040 + HER17_RS18990 0.89 -0.2 4,269,040 + HER17_RS18990 0.89 -0.3 4,269,040 + HER17_RS18990 0.89 +0.9 4,269,041 - HER17_RS18990 0.89 +0.1 4,269,041 - HER17_RS18990 0.89 +0.0 4,269,041 - HER17_RS18990 0.89 +0.4 4,269,041 - HER17_RS18990 0.89 +0.3 4,269,098 + +0.6 4,269,098 + -0.4 4,269,098 + -0.2 4,269,099 - +0.9 4,269,104 + +0.9 4,269,110 - -0.3 4,269,153 + -0.0 4,269,153 + -0.2 4,269,156 + -0.4 4,269,157 - -0.3 4,269,314 - +0.8 4,269,340 + +0.1 4,269,348 + +0.2 4,269,348 + -1.5 4,269,349 - -1.1 4,269,349 - -0.2 4,269,388 - +0.0 4,269,519 - -0.2 4,269,581 + -0.3 4,269,582 - +0.4 4,269,582 - -0.9 4,269,582 - +0.2 4,269,584 + -1.8 4,269,584 + +0.5 4,269,584 + -1.1 4,269,584 + -0.3 4,269,584 + +1.4 4,269,584 + -0.6 4,269,584 + -0.2 4,269,584 + +1.1 4,269,585 - -1.5 4,269,585 - +0.1 4,269,585 - -0.1 4,269,621 - +0.7 4,269,800 + +0.6 4,269,800 + -0.4 4,269,801 - -0.2 4,269,801 - -0.5 4,269,801 - +0.6 4,269,847 + -0.1 4,269,848 - -1.1 4,269,848 - +0.4 4,269,848 - +0.4 4,269,857 - +0.0 4,269,860 + -0.4 4,269,860 + -0.3 4,269,860 + -1.6 4,269,860 + +0.1 4,269,861 - -0.1 4,269,861 - +1.2 4,269,861 - +0.1 4,269,917 + HER17_RS18995 0.10 +0.6 4,269,917 + HER17_RS18995 0.10 +0.8 4,270,021 + HER17_RS18995 0.12 +0.2 4,270,022 - HER17_RS18995 0.12 +0.4 4,270,022 - HER17_RS18995 0.12 -0.0 4,270,022 - HER17_RS18995 0.12 -2.1 4,270,022 - HER17_RS18995 0.12 +0.5 4,270,034 + HER17_RS18995 0.12 +0.5 4,270,075 - HER17_RS18995 0.13 -0.3 4,270,088 + HER17_RS18995 0.13 -0.8 4,270,088 + HER17_RS18995 0.13 +1.1 4,270,088 + HER17_RS18995 0.13 -0.3 4,270,088 + HER17_RS18995 0.13 -0.3 4,270,089 - HER17_RS18995 0.13 -0.1 4,270,089 - HER17_RS18995 0.13 -0.0 4,270,135 + HER17_RS18995 0.14 +1.6 4,270,135 + HER17_RS18995 0.14 +0.1 4,270,135 + HER17_RS18995 0.14 -0.2 4,270,135 + HER17_RS18995 0.14 -0.2 4,270,136 - HER17_RS18995 0.14 +1.5 4,270,136 - HER17_RS18995 0.14 +0.1 4,270,145 + HER17_RS18995 0.14 -1.0 4,270,145 + HER17_RS18995 0.14 +0.4 4,270,145 + HER17_RS18995 0.14 -0.5 4,270,146 - HER17_RS18995 0.14 -0.2
Or see this region's nucleotide sequence