Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17205

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,872,789	+		HER17_RS17200	0.31	-0.2
3,872,790	-		HER17_RS17200	0.31	+0.2
3,872,798	-		HER17_RS17200	0.32	-0.1
3,872,798	-		HER17_RS17200	0.32	-0.1
3,872,964	+		HER17_RS17200	0.46	+0.4
3,872,965	-		HER17_RS17200	0.46	+0.5
3,873,128	-		HER17_RS17200	0.59	+0.0
3,873,294	+		HER17_RS17200	0.73	-0.8
3,873,294	+		HER17_RS17200	0.73	+0.1
3,873,295	-		HER17_RS17200	0.73	-0.2
3,873,297	+		HER17_RS17200	0.73	+1.3
3,873,297	+		HER17_RS17200	0.73	-0.7
3,873,297	+		HER17_RS17200	0.73	-0.9
3,873,298	-		HER17_RS17200	0.74	-0.1
3,873,363	+		HER17_RS17200	0.79	-0.8
3,873,363	+		HER17_RS17200	0.79	-0.1
3,873,363	+		HER17_RS17200	0.79	-0.5
3,873,363	+		HER17_RS17200	0.79	-0.0
3,873,363	+		HER17_RS17200	0.79	+0.1
3,873,363	+		HER17_RS17200	0.79	+0.1
3,873,363	+		HER17_RS17200	0.79	+1.0
3,873,364	-		HER17_RS17200	0.79	-0.2
3,873,364	-		HER17_RS17200	0.79	+0.5
3,873,364	-		HER17_RS17200	0.79	+0.2
3,873,364	-		HER17_RS17200	0.79	+0.2
3,873,364	-		HER17_RS17200	0.79	-0.2
3,873,364	-		HER17_RS17200	0.79	+0.2
3,873,364	-		HER17_RS17200	0.79	+0.2
3,873,364	-		HER17_RS17200	0.79	-0.2
3,873,365	+		HER17_RS17200	0.79	+0.5
3,873,366	-		HER17_RS17200	0.79	-0.5
3,873,366	-		HER17_RS17200	0.79	-0.5
3,873,438	+		HER17_RS17200	0.85	-0.2
3,873,438	+		HER17_RS17200	0.85	-1.0
3,873,438	+		HER17_RS17200	0.85	+0.4
3,873,439	-		HER17_RS17200	0.85	+0.2
3,873,439	-		HER17_RS17200	0.85	+0.0
3,873,584	+				-0.7
3,873,585	-				+0.4
3,873,612	+				-0.1
3,873,612	+				+0.1
3,873,612	+				-0.4
3,873,612	+				+0.2
3,873,613	-				-0.2
3,873,613	-				+0.3
3,873,613	-				-1.2
3,873,631	+				-0.7
3,873,631	+				-0.4
3,873,632	-				-0.5
3,873,632	-				+0.2
3,873,632	-				-0.1
3,873,635	+				-1.0
3,873,635	+				-0.4
3,873,635	+				-0.6
3,873,636	-				-0.2
3,873,636	-				-0.4
3,873,636	-				-0.9
3,873,636	-				+0.6
3,873,636	-				-0.4
3,873,776	+				-0.8
3,873,777	-				+0.2
3,873,814	-		HER17_RS17205	0.10	+0.8
3,873,814	-		HER17_RS17205	0.10	+0.4
3,873,903	+		HER17_RS17205	0.15	+1.0
3,873,904	-		HER17_RS17205	0.15	-0.2
3,873,957	+		HER17_RS17205	0.17	+0.9
3,873,957	+		HER17_RS17205	0.17	+0.0
3,873,958	-		HER17_RS17205	0.17	-1.1
3,874,003	+		HER17_RS17205	0.20	+0.4
3,874,003	+		HER17_RS17205	0.20	+0.5
3,874,003	+		HER17_RS17205	0.20	-0.2
3,874,003	+		HER17_RS17205	0.20	+0.1
3,874,003	+		HER17_RS17205	0.20	+0.6
3,874,003	+		HER17_RS17205	0.20	+0.0
3,874,004	-		HER17_RS17205	0.20	-0.3
3,874,004	-		HER17_RS17205	0.20	-0.2
3,874,004	-		HER17_RS17205	0.20	+0.0
3,874,004	-		HER17_RS17205	0.20	-0.2
3,874,006	+		HER17_RS17205	0.20	+0.1
3,874,007	-		HER17_RS17205	0.20	-0.3
3,874,015	+		HER17_RS17205	0.20	+0.8
3,874,177	+		HER17_RS17205	0.29	+1.1
3,874,178	-		HER17_RS17205	0.29	-0.0
3,874,178	-		HER17_RS17205	0.29	+0.8
3,874,397	+		HER17_RS17205	0.40	+0.8
3,874,661	+		HER17_RS17205	0.53	-0.0
3,874,661	+		HER17_RS17205	0.53	-0.9
3,874,662	-		HER17_RS17205	0.53	-0.2
3,874,760	-		HER17_RS17205	0.58	-0.2
3,874,760	-		HER17_RS17205	0.58	+0.7
3,874,760	-		HER17_RS17205	0.58	+0.2
3,874,768	-		HER17_RS17205	0.59	-1.0
3,874,768	-		HER17_RS17205	0.59	-0.4
3,874,784	+		HER17_RS17205	0.60	+0.1
3,874,784	+		HER17_RS17205	0.60	+0.2
3,874,990	-		HER17_RS17205	0.70	+1.3
3,875,025	+		HER17_RS17205	0.72	+1.3
3,875,026	-		HER17_RS17205	0.72	-0.9
3,875,057	+		HER17_RS17205	0.74	+1.0
3,875,057	+		HER17_RS17205	0.74	+0.7
3,875,058	-		HER17_RS17205	0.74	+0.7
3,875,058	-		HER17_RS17205	0.74	+0.3
3,875,058	-		HER17_RS17205	0.74	-0.7
3,875,058	-		HER17_RS17205	0.74	-0.4
3,875,067	-		HER17_RS17205	0.74	+0.0
3,875,067	-		HER17_RS17205	0.74	+0.4
3,875,067	-		HER17_RS17205	0.74	-0.2
3,875,087	+		HER17_RS17205	0.75	-0.1
3,875,087	+		HER17_RS17205	0.75	-0.8
3,875,088	-		HER17_RS17205	0.75	-1.1
3,875,133	-		HER17_RS17205	0.78	-0.1
3,875,243	-		HER17_RS17205	0.83	+1.1
3,875,315	+		HER17_RS17205	0.87	-0.3
3,875,315	+		HER17_RS17205	0.87	-0.4
3,875,316	-		HER17_RS17205	0.87	-0.1
3,875,448	+				-0.2
3,875,449	-				-1.0
3,875,449	-				-0.4
3,875,449	-				+1.0
3,875,569	-				-0.8
3,875,593	+				+0.8
3,875,593	+				-0.4
3,875,603	-				+1.2
3,875,609	-				+0.9
3,875,632	+				-2.1
3,875,633	-				-1.3
3,875,840	+		HER17_RS17210	0.26	-2.5
3,875,840	+		HER17_RS17210	0.26	-1.9
3,875,840	+		HER17_RS17210	0.26	-0.3
3,875,840	+		HER17_RS17210	0.26	-1.7
3,875,840	+		HER17_RS17210	0.26	-3.0
3,875,841	-		HER17_RS17210	0.27	-4.1
3,875,841	-		HER17_RS17210	0.27	-1.8
3,875,841	-		HER17_RS17210	0.27	-1.3
3,875,842	+		HER17_RS17210	0.27	+0.5
3,875,842	+		HER17_RS17210	0.27	-2.1
3,875,842	+		HER17_RS17210	0.27	-2.6
3,875,842	+		HER17_RS17210	0.27	-2.4
3,875,843	-		HER17_RS17210	0.27	-1.3
3,875,843	-		HER17_RS17210	0.27	-0.8
3,875,843	-		HER17_RS17210	0.27	-0.5
3,875,843	-		HER17_RS17210	0.27	-3.4
3,875,895	+		HER17_RS17210	0.33	-2.6
3,875,906	+		HER17_RS17210	0.34	-2.9
3,876,159	+		HER17_RS17210	0.63	-3.1
3,876,159	+		HER17_RS17210	0.63	-1.8
3,876,160	-		HER17_RS17210	0.63	-2.4
3,876,199	+		HER17_RS17210	0.67	-3.8
3,876,199	+		HER17_RS17210	0.67	-2.8
3,876,199	+		HER17_RS17210	0.67	-2.0
3,876,199	+		HER17_RS17210	0.67	-1.3
3,876,200	-		HER17_RS17210	0.67	-1.6
3,876,200	-		HER17_RS17210	0.67	-2.6
3,876,243	+		HER17_RS17210	0.72	-2.7
3,876,243	+		HER17_RS17210	0.72	-2.4
3,876,387	-		HER17_RS17210	0.88	-1.9
3,876,432	+				-1.7
3,876,432	+				-1.5
3,876,433	-				-2.2
3,876,461	+				-2.1
3,876,462	-				-1.0
3,876,462	-				-1.8
3,876,467	+				-2.7
3,876,467	+				-1.1
3,876,467	+				-2.9
3,876,467	+				-1.6
3,876,467	+				-2.9
3,876,468	-				-1.5
3,876,468	-				-2.8
3,876,468	-				-1.9
3,876,468	-				-1.2
3,876,500	+				-0.8
3,876,519	-				+0.1
3,876,519	-				-0.4
3,876,565	+				-0.4